RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 SLC30A9Q6PML9 568 aa12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 PPP1R2P41236 205 aa12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 AP2B1P63010 937 aa12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 FANCCQ00597 558 aa12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 TSC22D1Q15714 1073 aa12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 TRIM71Q2Q1W2 868 aaKnown RBP12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 ST13P5Q8NFI4 369 aaPredicted RBP12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 BZW2Q9Y6E2 419 aaKnown RBP12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 GOLGA8CPA6NN73 597 aa12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 EFCAB8A8MWE9 144 aa12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 ADCY3O60266 1144 aa12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 TMTC1Q8IUR5 882 aa12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 NACA2Q9H009 215 aa12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 IQCB1Q15051 598 aa12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 GYS2P54840 703 aa12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 NAPAP54920 295 aa12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 HNRNPH2P55795 449 aaKnown RBP12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 GPT2Q8TD30 523 aa12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 ARHGAP45Q92619 1136 aa12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 USP26Q9BXU7 913 aa12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 RTL9Q8NET4 1388 aa12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 ANKRD65E5RJM6 399 aa12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 ADCY8P40145 1251 aa12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 MAML1Q92585 1016 aa12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 PHF21AQ96BD5 680 aa12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 CALR3Q96L12 384 aaKnown RBP12.13□□□□□ -0.47
HDGFL3-201ENST00000299633 UBE3AQ05086 875 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 SF3B3Q15393 1217 aaKnown RBP12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 MCMDC2Q4G0Z9 681 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 ZNF513Q8N8E2 541 aaPredicted RBP12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 SPATA17Q96L03 361 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 OSBPL1AQ9BXW6 950 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 KIF20BQ96Q89 1820 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 MMEP08473 750 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 ATF2P15336 505 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 TMC5Q6UXY8 1006 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 ANKRD44Q8N8A2 993 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 C8orf58Q8NAV2 365 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 ATP6V1E2Q96A05 226 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 CFAP36Q96G28 342 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 GPC4O75487 556 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 SLFN14P0C7P3 912 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 TRAF1Q13077 416 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 PAG1Q9NWQ8 432 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 ITM2BQ9Y287 266 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 DEFA1P59665 94 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 DEFA3P59666 94 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 BRD8Q9H0E9 1235 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 TRPV6Q9H1D0 765 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 INTS9Q9NV88 658 aaKnown RBP12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 BCRP11274 1271 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 MYL5Q02045 173 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 RUNDC3BQ96NL0 473 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 BICC1Q9H694 974 aaKnown RBP12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 GMEB1Q9Y692 573 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 OLFML2BQ68BL8 750 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 PPHLN1Q8NEY8 458 aaKnown RBP12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 KRT6AP02538 564 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 KRT6BP04259 564 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 KRT6CP48668 564 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 FCHSD1Q86WN1 690 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 ASCC2Q9H1I8 757 aaPredicted RBP12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 AMFRQ9UKV5 643 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 ATP5HO75947 161 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 ANGPTL8Q6UXH0 198 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 SH3BP5LQ7L8J4 393 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 PLEKHM2Q8IWE5 1019 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 IQUBQ8NA54 791 aa12.12□□□□□ -0.47
HDGFL3-201ENST00000299633 TMEM247A6NEH6 219 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 KCNA1Q09470 495 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 CCDC144BQ3MJ40 725 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 SFMBT2Q5VUG0 894 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 KRT79Q5XKE5 535 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 CDAN1Q8IWY9 1227 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 RPN1P04843 607 aaKnown RBP12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 ANO5Q75V66 913 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 MRPL40Q9NQ50 206 aaKnown RBP12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 C1orf146Q5VVC0 180 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 CCDC103Q8IW40 242 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 TRIM58Q8NG06 486 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 IQCA1LA6NCM1 817 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 INHBAP08476 426 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 MTBPQ96DY7 904 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 UBE2OQ9C0C9 1292 aaKnown RBP12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 NUP205Q92621 2012 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 AP1B1Q10567 949 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 SCN2AQ99250 2005 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 B4DLN1 442 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 MRPL12P52815 198 aaKnown RBP12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 CNNM2Q9H8M5 875 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 PLXNC1O60486 1568 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 SPDYE3A6NKU9 549 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 MAPK13O15264 365 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 DTHD1Q6ZMT9 781 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 RAPH1Q70E73 1250 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.11□□□□□ -0.474e-6■■■■■ 36.3
HDGFL3-201ENST00000299633 MPP6Q9NZW5 540 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 E2F6O75461 281 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 HLA-DOAP06340 250 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms