RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 CTCFLQ8NI51 663 aaPredicted RBP19.07■□□□□ 0.64
FOXA1-201ENST00000250448 PDE11AQ9HCR9 933 aa19.07■□□□□ 0.64
FOXA1-201ENST00000250448 VPS54Q9P1Q0 977 aa19.07■□□□□ 0.64
FOXA1-201ENST00000250448 XBP1P17861 261 aa19.06■□□□□ 0.64
FOXA1-201ENST00000250448 GABPAQ06546 454 aa19.06■□□□□ 0.64
FOXA1-201ENST00000250448 CXCL9Q07325 125 aa19.06■□□□□ 0.64
FOXA1-201ENST00000250448 SLC20A2Q08357 652 aa19.06■□□□□ 0.64
FOXA1-201ENST00000250448 FUT2Q10981 343 aa19.06■□□□□ 0.64
FOXA1-201ENST00000250448 EARS2Q5JPH6 523 aaKnown RBP19.06■□□□□ 0.64
FOXA1-201ENST00000250448 FERMT2Q96AC1 680 aa19.06■□□□□ 0.64
FOXA1-201ENST00000250448 DDAH1O94760 285 aa19.06■□□□□ 0.64
FOXA1-201ENST00000250448 MCM6Q14566 821 aa19.06■□□□□ 0.64
FOXA1-201ENST00000250448 NAPGQ99747 312 aaPredicted RBP19.06■□□□□ 0.64
FOXA1-201ENST00000250448 ZNRF3Q9ULT6 936 aa19.06■□□□□ 0.64
FOXA1-201ENST00000250448 BMP15O95972 392 aa19.05■□□□□ 0.64
FOXA1-201ENST00000250448 TMTC3Q6ZXV5 915 aa19.05■□□□□ 0.64
FOXA1-201ENST00000250448 DGKHQ86XP1 1220 aa19.05■□□□□ 0.64
FOXA1-201ENST00000250448 TMTC1Q8IUR5 882 aa19.05■□□□□ 0.64
FOXA1-201ENST00000250448 MSL3Q8N5Y2 521 aaKnown RBP19.05■□□□□ 0.64
FOXA1-201ENST00000250448 GOLGA5Q8TBA6 731 aa19.05■□□□□ 0.64
FOXA1-201ENST00000250448 ZNF287Q9HBT7 754 aa19.05■□□□□ 0.64
FOXA1-201ENST00000250448 TCP10L2B9ZVM9 353 aa19.05■□□□□ 0.64
FOXA1-201ENST00000250448 EIF3JO75822 258 aaKnown RBP19.05■□□□□ 0.64
FOXA1-201ENST00000250448 VIL1P09327 827 aaKnown RBP19.05■□□□□ 0.64
FOXA1-201ENST00000250448 CCT6AP40227 531 aaKnown RBP19.05■□□□□ 0.64
FOXA1-201ENST00000250448 ERVK-24P63145 666 aa19.05■□□□□ 0.64
FOXA1-201ENST00000250448 WHAMMP3Q1A5X7 153 aa19.05■□□□□ 0.64
FOXA1-201ENST00000250448 NEDD1Q8NHV4 660 aa19.05■□□□□ 0.64
FOXA1-201ENST00000250448 PHF20Q9BVI0 1012 aa19.05■□□□□ 0.64
FOXA1-201ENST00000250448 DNAJC18Q9H819 358 aa19.05■□□□□ 0.64
FOXA1-201ENST00000250448 ABCB6Q9NP58 842 aa19.05■□□□□ 0.64
FOXA1-201ENST00000250448 MPHOSPH10O00566 681 aaKnown RBP19.04■□□□□ 0.64
FOXA1-201ENST00000250448 SHMT1P34896 483 aa19.04■□□□□ 0.64
FOXA1-201ENST00000250448 GRIPAP1Q4V328 841 aa19.04■□□□□ 0.64
FOXA1-201ENST00000250448 IRX3P78415 501 aaPredicted RBP19.04■□□□□ 0.64
FOXA1-201ENST00000250448 HDLBPQ00341 1268 aaKnown RBP19.04■□□□□ 0.64
FOXA1-201ENST00000250448 KRT31Q15323 416 aa19.04■□□□□ 0.64
FOXA1-201ENST00000250448 PKN1Q16512 942 aa19.04■□□□□ 0.64
FOXA1-201ENST00000250448 GMLQ99445 158 aa19.04■□□□□ 0.64
FOXA1-201ENST00000250448 CWC15Q9P013 229 aaKnown RBP19.04■□□□□ 0.64
FOXA1-201ENST00000250448 VPS18Q9P253 973 aa19.04■□□□□ 0.64
FOXA1-201ENST00000250448 LIMA1Q9UHB6 759 aaKnown RBP19.04■□□□□ 0.64
FOXA1-201ENST00000250448 L1RE1Q9UN81 338 aa19.04■□□□□ 0.64
FOXA1-201ENST00000250448 CTAGE15A4D2H0 777 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 WNT7AO00755 349 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 TFRCP02786 760 aaKnown RBP19.03■□□□□ 0.64
FOXA1-201ENST00000250448 HLA-DOAP06340 250 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 RHOXF2BP0C7M4 288 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 CTAGE8P0CG41 777 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 CALM1P0DP23 149 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 CALM2P0DP24 149 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 CALM3P0DP25 149 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 CTAGE6Q86UF2 777 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 CTAGE4Q8IX94 777 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 RHOXF2Q9BQY4 288 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 ABHD10Q9NUJ1 306 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 FEZ2Q9UHY8 353 aaPredicted RBP19.03■□□□□ 0.64
FOXA1-201ENST00000250448 BRCA1P38398 1863 aaKnown RBP19.03■□□□□ 0.64
FOXA1-201ENST00000250448 ARHGAP25P42331 645 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 PRELPP51888 382 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 PPP2R5BQ15173 497 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 SOGA3Q5TF21 947 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 LRRC47Q8N1G4 583 aaKnown RBP19.03■□□□□ 0.64
FOXA1-201ENST00000250448 MRIQ9BWK5 157 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 MYO1AQ9UBC5 1043 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 CNTNAP5Q8WYK1 1306 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 N4BP3O15049 544 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 VSNL1P62760 191 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 ATP2B2Q01814 1243 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 CYP26C1Q6V0L0 522 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 GBP3Q9H0R5 595 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 CD2APQ9Y5K6 639 aa19.03■□□□□ 0.64
FOXA1-201ENST00000250448 ABL1P00519 1130 aa19.02■□□□□ 0.64
FOXA1-201ENST00000250448 JDP2Q8WYK2 163 aa19.02■□□□□ 0.64
FOXA1-201ENST00000250448 TCP11L1Q9NUJ3 509 aa19.02■□□□□ 0.64
FOXA1-201ENST00000250448 RBM28Q9NW13 759 aaKnown RBP19.02■□□□□ 0.64
FOXA1-201ENST00000250448 COBLO75128 1261 aa19.02■□□□□ 0.63
FOXA1-201ENST00000250448 COPB1P53618 953 aaKnown RBP19.02■□□□□ 0.63
FOXA1-201ENST00000250448 SPAG1Q07617 926 aa19.02■□□□□ 0.63
FOXA1-201ENST00000250448 TRIM14Q14142 442 aa19.02■□□□□ 0.63
FOXA1-201ENST00000250448 ZNF174Q15697 407 aa19.02■□□□□ 0.63
FOXA1-201ENST00000250448 SLC35G1Q2M3R5 365 aa19.02■□□□□ 0.63
FOXA1-201ENST00000250448 USP17L2Q6R6M4 530 aa19.02■□□□□ 0.63
FOXA1-201ENST00000250448 OGFOD1Q8N543 542 aa19.02■□□□□ 0.63
FOXA1-201ENST00000250448 STAMQ92783 540 aa19.02■□□□□ 0.63
FOXA1-201ENST00000250448 SUGCTQ9HAC7 445 aa19.02■□□□□ 0.63
FOXA1-201ENST00000250448 SPDYE2BA6NHP3 402 aa19.01■□□□□ 0.63
FOXA1-201ENST00000250448 PRPF3O43395 683 aaKnown RBP19.01■□□□□ 0.63
FOXA1-201ENST00000250448 SPDYE6P0CI01 402 aa19.01■□□□□ 0.63
FOXA1-201ENST00000250448 ACTN2P35609 894 aa19.01■□□□□ 0.63
FOXA1-201ENST00000250448 DLGAP5Q15398 846 aa19.01■□□□□ 0.63
FOXA1-201ENST00000250448 TTC38Q5R3I4 469 aa19.01■□□□□ 0.63
FOXA1-201ENST00000250448 RRAGBQ5VZM2 374 aa19.01■□□□□ 0.63
FOXA1-201ENST00000250448 CDAN1Q8IWY9 1227 aa19.01■□□□□ 0.63
FOXA1-201ENST00000250448 IQUBQ8NA54 791 aa19.01■□□□□ 0.63
FOXA1-201ENST00000250448 NUP88Q99567 741 aaPredicted RBP19.01■□□□□ 0.63
FOXA1-201ENST00000250448 IDI2Q9BXS1 227 aa19.01■□□□□ 0.63
FOXA1-201ENST00000250448 VEZTQ9HBM0 779 aa19.01■□□□□ 0.63
FOXA1-201ENST00000250448 MAD2L2Q9UI95 211 aa19.01■□□□□ 0.63
FOXA1-201ENST00000250448 CDC25AP30304 524 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms