RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 NFIBO00712 420 aa18.9■□□□□ 0.62
TRIM28-206ENST00000595974 DHX16O60231 1041 aaKnown RBP18.9■□□□□ 0.62
TRIM28-206ENST00000595974 RARBP10826 455 aa18.9■□□□□ 0.62
TRIM28-206ENST00000595974 MCM5P33992 734 aa18.9■□□□□ 0.62
TRIM28-206ENST00000595974 GRM4Q14833 912 aa18.9■□□□□ 0.62
TRIM28-206ENST00000595974 ARRDC4Q8NCT1 418 aa18.9■□□□□ 0.62
TRIM28-206ENST00000595974 IGDCC4Q8TDY8 1250 aa18.9■□□□□ 0.62
TRIM28-206ENST00000595974 ABHD16BQ9H3Z7 469 aa18.9■□□□□ 0.62
TRIM28-206ENST00000595974 MAD2L2Q9UI95 211 aa18.9■□□□□ 0.62
TRIM28-206ENST00000595974 NR2E3Q9Y5X4 410 aa18.9■□□□□ 0.62
TRIM28-206ENST00000595974 SOWAHBA6NEL2 793 aa18.89■□□□□ 0.61
TRIM28-206ENST00000595974 KLRF2D3W0D1 207 aa18.89■□□□□ 0.61
TRIM28-206ENST00000595974 PRC1O43663 620 aa18.89■□□□□ 0.61
TRIM28-206ENST00000595974 ANO1Q5XXA6 986 aa18.89■□□□□ 0.61
TRIM28-206ENST00000595974 CATIPQ7Z7H3 387 aa18.89■□□□□ 0.61
TRIM28-206ENST00000595974 CCDC144CPQ8IYA2 1237 aa18.89■□□□□ 0.61
TRIM28-206ENST00000595974 STAG2Q8N3U4 1231 aa18.89■□□□□ 0.61
TRIM28-206ENST00000595974 CLEC4DQ8WXI8 215 aa18.89■□□□□ 0.61
TRIM28-206ENST00000595974 TMEM87BQ96K49 555 aa18.89■□□□□ 0.61
TRIM28-206ENST00000595974 MAF1Q9H063 256 aa18.89■□□□□ 0.61
TRIM28-206ENST00000595974 LY9Q9HBG7 655 aa18.89■□□□□ 0.61
TRIM28-206ENST00000595974 SENP2Q9HC62 589 aa18.89■□□□□ 0.61
TRIM28-206ENST00000595974 ZHX1Q9UKY1 873 aaPredicted RBP18.89■□□□□ 0.61
TRIM28-206ENST00000595974 LOC102724159A0A0B4J2E5 919 aa18.88■□□□□ 0.61
TRIM28-206ENST00000595974 PALM3A6NDB9 673 aaPredicted RBP18.88■□□□□ 0.61
TRIM28-206ENST00000595974 KBTBD13C9JR72 458 aa18.88■□□□□ 0.61
TRIM28-206ENST00000595974 EVI5O60447 810 aa18.88■□□□□ 0.61
TRIM28-206ENST00000595974 TROAPQ12815 778 aa18.88■□□□□ 0.61
TRIM28-206ENST00000595974 ACVR2BQ13705 512 aa18.88■□□□□ 0.61
TRIM28-206ENST00000595974 PWP2Q15269 919 aaKnown RBP18.88■□□□□ 0.61
TRIM28-206ENST00000595974 QRICH1Q2TAL8 776 aa18.88■□□□□ 0.61
TRIM28-206ENST00000595974 USH1GQ495M9 461 aa18.88■□□□□ 0.61
TRIM28-206ENST00000595974 JMJD4Q9H9V9 463 aa18.88■□□□□ 0.61
TRIM28-206ENST00000595974 XPNPEP3Q9NQH7 507 aa18.88■□□□□ 0.61
TRIM28-206ENST00000595974 ADD3Q9UEY8 706 aaKnown RBP18.88■□□□□ 0.61
TRIM28-206ENST00000595974 FAM184BQ9ULE4 1060 aa18.88■□□□□ 0.61
TRIM28-206ENST00000595974 ABCB11O95342 1321 aa18.88■□□□□ 0.61
TRIM28-206ENST00000595974 DNAH12Q6ZR08 3092 aa18.87■□□□□ 0.61
TRIM28-206ENST00000595974 PTPDC1A2A3K4 754 aa18.87■□□□□ 0.61
TRIM28-206ENST00000595974 SH2B2O14492 632 aaPredicted RBP18.87■□□□□ 0.61
TRIM28-206ENST00000595974 ASTN1O14525 1302 aa18.87■□□□□ 0.61
TRIM28-206ENST00000595974 DDAH1O94760 285 aa18.87■□□□□ 0.61
TRIM28-206ENST00000595974 BAATQ14032 418 aaPredicted RBP18.87■□□□□ 0.61
TRIM28-206ENST00000595974 SLC30A10Q6XR72 485 aa18.87■□□□□ 0.61
TRIM28-206ENST00000595974 RNF207Q6ZRF8 634 aa18.87■□□□□ 0.61
TRIM28-206ENST00000595974 TMTC2Q8N394 836 aa18.87■□□□□ 0.61
TRIM28-206ENST00000595974 MAP3K14Q99558 947 aa18.87■□□□□ 0.61
TRIM28-206ENST00000595974 KATNBL1Q9H079 304 aa18.87■□□□□ 0.61
TRIM28-206ENST00000595974 H0YGN5 161 aa18.86■□□□□ 0.61
TRIM28-206ENST00000595974 LRRC41Q15345 812 aa18.86■□□□□ 0.61
TRIM28-206ENST00000595974 TSGA10IPQ3SY00 556 aa18.86■□□□□ 0.61
TRIM28-206ENST00000595974 GJC2Q5T442 439 aaPredicted RBP18.86■□□□□ 0.61
TRIM28-206ENST00000595974 FBXO11Q86XK2 927 aa18.86■□□□□ 0.61
TRIM28-206ENST00000595974 ZNF654Q8IZM8 581 aa18.86■□□□□ 0.61
TRIM28-206ENST00000595974 RGS22Q8NE09 1264 aa18.86■□□□□ 0.61
TRIM28-206ENST00000595974 MTMR8Q96EF0 704 aa18.86■□□□□ 0.61
TRIM28-206ENST00000595974 VAT1LQ9HCJ6 419 aa18.86■□□□□ 0.61
TRIM28-206ENST00000595974 ZBTB5O15062 677 aa18.85■□□□□ 0.61
TRIM28-206ENST00000595974 DUSP11O75319 330 aaKnown RBP18.85■□□□□ 0.61
TRIM28-206ENST00000595974 REC8O95072 547 aa18.85■□□□□ 0.61
TRIM28-206ENST00000595974 LIFRP42702 1097 aa18.85■□□□□ 0.61
TRIM28-206ENST00000595974 ALDH5A1P51649 535 aaPredicted RBP18.85■□□□□ 0.61
TRIM28-206ENST00000595974 RPS6P62753 249 aaKnown RBP18.85■□□□□ 0.61
TRIM28-206ENST00000595974 KRT32Q14532 448 aa18.85■□□□□ 0.61
TRIM28-206ENST00000595974 CCDC144BQ3MJ40 725 aa18.85■□□□□ 0.61
TRIM28-206ENST00000595974 RNF180Q86T96 592 aa18.85■□□□□ 0.61
TRIM28-206ENST00000595974 MORC4Q8TE76 937 aa18.85■□□□□ 0.61
TRIM28-206ENST00000595974 AMNQ9BXJ7 453 aa18.85■□□□□ 0.61
TRIM28-206ENST00000595974 RIOX1Q9H6W3 641 aa18.85■□□□□ 0.61
TRIM28-206ENST00000595974 MRPL11Q9Y3B7 192 aaKnown RBP18.85■□□□□ 0.61
TRIM28-206ENST00000595974 SYNRGQ9UMZ2 1314 aa18.84■□□□□ 0.61
TRIM28-206ENST00000595974 CCDC69A6NI79 296 aa18.84■□□□□ 0.61
TRIM28-206ENST00000595974 ADAMTS4O75173 837 aa18.84■□□□□ 0.61
TRIM28-206ENST00000595974 MYCNP04198 464 aaPredicted RBP18.84■□□□□ 0.61
TRIM28-206ENST00000595974 CALML3P27482 149 aa18.84■□□□□ 0.61
TRIM28-206ENST00000595974 KIF5BP33176 963 aa18.84■□□□□ 0.61
TRIM28-206ENST00000595974 TRAF1Q13077 416 aa18.84■□□□□ 0.61
TRIM28-206ENST00000595974 COL9A3Q14050 684 aaPredicted RBP18.84■□□□□ 0.61
TRIM28-206ENST00000595974 NFXL1Q6ZNB6 911 aa18.84■□□□□ 0.61
TRIM28-206ENST00000595974 MCF2L2Q86YR7 1114 aa18.84■□□□□ 0.61
TRIM28-206ENST00000595974 DNERQ8NFT8 737 aa18.84■□□□□ 0.61
TRIM28-206ENST00000595974 CTCFLQ8NI51 663 aaPredicted RBP18.84■□□□□ 0.61
TRIM28-206ENST00000595974 LENG1Q96BZ8 264 aaPredicted RBP18.84■□□□□ 0.61
TRIM28-206ENST00000595974 NEK1Q96PY6 1258 aa18.84■□□□□ 0.61
TRIM28-206ENST00000595974 SENP6Q9GZR1 1112 aaPredicted RBP18.84■□□□□ 0.61
TRIM28-206ENST00000595974 VTA1Q9NP79 307 aa18.84■□□□□ 0.61
TRIM28-206ENST00000595974 GPHNQ9NQX3 736 aaPredicted RBP18.84■□□□□ 0.61
TRIM28-206ENST00000595974 KIAA1217Q5T5P2 1943 aa18.83■□□□□ 0.6
TRIM28-206ENST00000595974 PGK1P00558 417 aa18.83■□□□□ 0.6
TRIM28-206ENST00000595974 CALM1P0DP23 149 aa18.83■□□□□ 0.6
TRIM28-206ENST00000595974 CALM2P0DP24 149 aa18.83■□□□□ 0.6
TRIM28-206ENST00000595974 CALM3P0DP25 149 aa18.83■□□□□ 0.6
TRIM28-206ENST00000595974 C7orf61Q8IZ16 206 aa18.83■□□□□ 0.6
TRIM28-206ENST00000595974 NUP133Q8WUM0 1156 aa18.83■□□□□ 0.6
TRIM28-206ENST00000595974 PURBQ96QR8 312 aaKnown RBP18.83■□□□□ 0.6
TRIM28-206ENST00000595974 MPHOSPH6Q99547 160 aaKnown RBP18.83■□□□□ 0.6
TRIM28-206ENST00000595974 LRRC26Q2I0M4 334 aa18.82■□□□□ 0.6
TRIM28-206ENST00000595974 SLC35G1Q2M3R5 365 aa18.82■□□□□ 0.6
TRIM28-206ENST00000595974 SGMS1Q86VZ5 419 aa18.82■□□□□ 0.6
TRIM28-206ENST00000595974 FBXO16Q8IX29 292 aaPredicted RBP18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms