RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 SCAND2PQ9GZW5 306 aaPredicted RBP16.89■□□□□ 0.29
SHKBP1-211ENST00000595945 PSTPIP2Q9H939 334 aa16.89■□□□□ 0.29
SHKBP1-211ENST00000595945 POLR3EQ9NVU0 708 aa16.89■□□□□ 0.29
SHKBP1-211ENST00000595945 PNMA2Q9UL42 364 aa16.89■□□□□ 0.29
SHKBP1-211ENST00000595945 AGTPBP1Q9UPW5 1226 aa16.89■□□□□ 0.29
SHKBP1-211ENST00000595945 ELP1O95163 1332 aa16.89■□□□□ 0.29
SHKBP1-211ENST00000595945 ATP2A1O14983 1001 aa16.88■□□□□ 0.29
SHKBP1-211ENST00000595945 FIBPO43427 364 aa16.88■□□□□ 0.29
SHKBP1-211ENST00000595945 ZBED4O75132 1171 aa16.88■□□□□ 0.29
SHKBP1-211ENST00000595945 NCLP19338 710 aaKnown RBP16.88■□□□□ 0.29
SHKBP1-211ENST00000595945 TRAPPC10P48553 1259 aa16.88■□□□□ 0.29
SHKBP1-211ENST00000595945 MRPL12P52815 198 aaKnown RBP16.88■□□□□ 0.29
SHKBP1-211ENST00000595945 USH1GQ495M9 461 aa16.88■□□□□ 0.29
SHKBP1-211ENST00000595945 REXO1Q8N1G1 1221 aaKnown RBP16.88■□□□□ 0.29
SHKBP1-211ENST00000595945 GDPD2Q9HCC8 539 aa16.88■□□□□ 0.29
SHKBP1-211ENST00000595945 HOXC10Q9NYD6 342 aa16.88■□□□□ 0.29
SHKBP1-211ENST00000595945 CLIC4Q9Y696 253 aa16.88■□□□□ 0.29
SHKBP1-211ENST00000595945 MEIS2O14770 477 aa16.87■□□□□ 0.29
SHKBP1-211ENST00000595945 YEATS4O95619 227 aa16.87■□□□□ 0.29
SHKBP1-211ENST00000595945 ZBTB48P10074 688 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-211ENST00000595945 PTMSP20962 102 aa16.87■□□□□ 0.29
SHKBP1-211ENST00000595945 OAZ1P54368 228 aa16.87■□□□□ 0.29
SHKBP1-211ENST00000595945 HUNKP57058 714 aa16.87■□□□□ 0.29
SHKBP1-211ENST00000595945 GHRHRQ02643 423 aa16.87■□□□□ 0.29
SHKBP1-211ENST00000595945 PTPAQ15257 358 aa16.87■□□□□ 0.29
SHKBP1-211ENST00000595945 ANO1Q5XXA6 986 aa16.87■□□□□ 0.29
SHKBP1-211ENST00000595945 POTEEQ6S8J3 1075 aa16.87■□□□□ 0.29
SHKBP1-211ENST00000595945 SAMD1Q6SPF0 538 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-211ENST00000595945 LBX2Q6XYB7 198 aa16.87■□□□□ 0.29
SHKBP1-211ENST00000595945 PIK3AP1Q6ZUJ8 805 aa16.87■□□□□ 0.29
SHKBP1-211ENST00000595945 AGBL1Q96MI9 1066 aa16.87■□□□□ 0.29
SHKBP1-211ENST00000595945 TMEM260Q9NX78 707 aa16.87■□□□□ 0.29
SHKBP1-211ENST00000595945 BIN2Q9UBW5 565 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-211ENST00000595945 MRPL11Q9Y3B7 192 aaKnown RBP16.87■□□□□ 0.29
SHKBP1-211ENST00000595945 MORC2Q9Y6X9 1032 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-211ENST00000595945 CCDC194A0A1B0GVG4 234 aa16.86■□□□□ 0.29
SHKBP1-211ENST00000595945 PIK3CDO00329 1044 aa16.86■□□□□ 0.29
SHKBP1-211ENST00000595945 PRPF40AO75400 957 aaKnown RBP16.86■□□□□ 0.29
SHKBP1-211ENST00000595945 CETPP11597 493 aa16.86■□□□□ 0.29
SHKBP1-211ENST00000595945 GTF2A2P52657 109 aa16.86■□□□□ 0.29
SHKBP1-211ENST00000595945 UBE2SQ16763 222 aa16.86■□□□□ 0.29
SHKBP1-211ENST00000595945 CSPP1Q1MSJ5 1256 aa16.86■□□□□ 0.29
SHKBP1-211ENST00000595945 JAKMIP3Q5VZ66 844 aa16.86■□□□□ 0.29
SHKBP1-211ENST00000595945 LINC00301Q8NCQ3 95 aa16.86■□□□□ 0.29
SHKBP1-211ENST00000595945 CLEC4DQ8WXI8 215 aa16.86■□□□□ 0.29
SHKBP1-211ENST00000595945 SPATA32Q96LK8 384 aa16.86■□□□□ 0.29
SHKBP1-211ENST00000595945 ASCC2Q9H1I8 757 aaPredicted RBP16.86■□□□□ 0.29
SHKBP1-211ENST00000595945 RAVER2Q9HCJ3 691 aaKnown RBP16.86■□□□□ 0.29
SHKBP1-211ENST00000595945 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.86■□□□□ 0.29
SHKBP1-211ENST00000595945 ZNF214Q9UL59 606 aaPredicted RBP16.86■□□□□ 0.29
SHKBP1-211ENST00000595945 CCPG1Q9ULG6 757 aa16.86■□□□□ 0.29
SHKBP1-211ENST00000595945 NOL7Q9UMY1 257 aaKnown RBP16.86■□□□□ 0.29
SHKBP1-211ENST00000595945 LCTP09848 1927 aa16.86■□□□□ 0.29
SHKBP1-211ENST00000595945 WNT7AO00755 349 aa16.85■□□□□ 0.29
SHKBP1-211ENST00000595945 TOMM70O94826 608 aa16.85■□□□□ 0.29
SHKBP1-211ENST00000595945 NBR1Q14596 966 aa16.85■□□□□ 0.29
SHKBP1-211ENST00000595945 SLC39A14Q15043 492 aa16.85■□□□□ 0.29
SHKBP1-211ENST00000595945 NONOQ15233 471 aaKnown RBP eCLIP16.85■□□□□ 0.29
SHKBP1-211ENST00000595945 MCTP2Q6DN12 878 aa16.85■□□□□ 0.29
SHKBP1-211ENST00000595945 USP17L6PQ6QN14 398 aa16.85■□□□□ 0.29
SHKBP1-211ENST00000595945 SAPCD2Q86UD0 394 aa16.85■□□□□ 0.29
SHKBP1-211ENST00000595945 RASAL3Q86YV0 1011 aa16.85■□□□□ 0.29
SHKBP1-211ENST00000595945 BRI3BPQ8WY22 251 aa16.85■□□□□ 0.29
SHKBP1-211ENST00000595945 P2RX7Q99572 595 aaKnown RBP16.85■□□□□ 0.29
SHKBP1-211ENST00000595945 SLC45A1Q9Y2W3 748 aa16.85■□□□□ 0.29
SHKBP1-211ENST00000595945 PCDHB6Q9Y5E3 794 aa16.85■□□□□ 0.29
SHKBP1-211ENST00000595945 TLL2Q9Y6L7 1015 aa16.85■□□□□ 0.29
SHKBP1-211ENST00000595945 ZNFX1Q9P2E3 1918 aaKnown RBP16.84■□□□□ 0.29
SHKBP1-211ENST00000595945 EDIL3O43854 480 aa16.84■□□□□ 0.29
SHKBP1-211ENST00000595945 GADD45BO75293 160 aaPredicted RBP16.84■□□□□ 0.29
SHKBP1-211ENST00000595945 CEBPZQ03701 1054 aaKnown RBP16.84■□□□□ 0.29
SHKBP1-211ENST00000595945 PABPC4Q13310 644 aaKnown RBP eCLIP16.84■□□□□ 0.29
SHKBP1-211ENST00000595945 AP3B2Q13367 1082 aa16.84■□□□□ 0.29
SHKBP1-211ENST00000595945 TMEM132BQ14DG7 1078 aa16.84■□□□□ 0.29
SHKBP1-211ENST00000595945 SF3A1Q15459 793 aaKnown RBP16.84■□□□□ 0.29
SHKBP1-211ENST00000595945 INF2Q27J81 1249 aa16.84■□□□□ 0.29
SHKBP1-211ENST00000595945 TTC38Q5R3I4 469 aa16.84■□□□□ 0.29
SHKBP1-211ENST00000595945 CPXCR1Q8N123 301 aa16.84■□□□□ 0.29
SHKBP1-211ENST00000595945 SAMD3Q8N6K7 520 aa16.84■□□□□ 0.29
SHKBP1-211ENST00000595945 MB21D1Q8N884 522 aa16.84■□□□□ 0.29
SHKBP1-211ENST00000595945 CCL15-CCL14A0A0B4J2E2 113 aa16.83■□□□□ 0.28
SHKBP1-211ENST00000595945 TESPA1A2RU30 521 aaPredicted RBP16.83■□□□□ 0.28
SHKBP1-211ENST00000595945 CNMDO75829 334 aa16.83■□□□□ 0.28
SHKBP1-211ENST00000595945 OSBPP22059 807 aa16.83■□□□□ 0.28
SHKBP1-211ENST00000595945 HSD17B4P51659 736 aa16.83■□□□□ 0.28
SHKBP1-211ENST00000595945 IRX3P78415 501 aaPredicted RBP16.83■□□□□ 0.28
SHKBP1-211ENST00000595945 STK38Q15208 465 aa16.83■□□□□ 0.28
SHKBP1-211ENST00000595945 CCL15Q16663 113 aa16.83■□□□□ 0.28
SHKBP1-211ENST00000595945 TKFCQ3LXA3 575 aa16.83■□□□□ 0.28
SHKBP1-211ENST00000595945 ANKRD23Q86SG2 305 aa16.83■□□□□ 0.28
SHKBP1-211ENST00000595945 TBC1D5Q92609 795 aa16.83■□□□□ 0.28
SHKBP1-211ENST00000595945 PGBD1Q96JS3 809 aa16.83■□□□□ 0.28
SHKBP1-211ENST00000595945 ANO3Q9BYT9 981 aa16.83■□□□□ 0.28
SHKBP1-211ENST00000595945 CTDP1Q9Y5B0 961 aaPredicted RBP16.83■□□□□ 0.28
SHKBP1-211ENST00000595945 GCOM1H8Y6P7 765 aaPredicted RBP16.82■□□□□ 0.28
SHKBP1-211ENST00000595945 SPTLC2O15270 562 aa16.82■□□□□ 0.28
SHKBP1-211ENST00000595945 FOSP01100 380 aaPredicted RBP16.82■□□□□ 0.28
SHKBP1-211ENST00000595945 POLR2MP0CAP2 368 aa16.82■□□□□ 0.28
SHKBP1-211ENST00000595945 ALAS1P13196 640 aa16.82■□□□□ 0.28
SHKBP1-211ENST00000595945 HERVK_113P62684 666 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms