RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 CTAGE15A4D2H0 777 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 CTAGE8P0CG41 777 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 CYP2C19P33261 490 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 NOVP48745 357 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 KRT83P78385 493 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 DIXDC1Q155Q3 683 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 MEA1Q16626 185 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 LONRF2Q1L5Z9 754 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 SLC4A8Q2Y0W8 1093 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 SOGA3Q5TF21 947 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 NEK8Q86SG6 692 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 CTAGE6Q86UF2 777 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 CTAGE4Q8IX94 777 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 P2RX5Q93086 422 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 EYA3Q99504 573 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 SLF1Q9BQI6 1058 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 EXOC1Q9NV70 894 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 LTBP4Q8N2S1 1624 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 PSMD14O00487 310 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 MAP2K7O14733 419 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 PLCG1P19174 1290 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 CDK8P49336 464 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 PMS1P54277 932 aaKnown RBP15.12■□□□□ 0.01
SHMT2-222ENST00000555774 AMPD2Q01433 879 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 SMC1AQ14683 1233 aaKnown RBP15.12■□□□□ 0.01
SHMT2-222ENST00000555774 SMIM5Q71RC9 77 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 SLF2Q8IX21 1173 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 TRIM9Q9C026 710 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 SEC63Q9UGP8 760 aaKnown RBP15.12■□□□□ 0.01
SHMT2-222ENST00000555774 PUF60Q9UHX1 559 aaKnown RBP15.12■□□□□ 0.01
SHMT2-222ENST00000555774 BTAF1O14981 1849 aa15.12■□□□□ 0.01
SHMT2-222ENST00000555774 BTDP43251 543 aa15.11■□□□□ 0.01
SHMT2-222ENST00000555774 FIGNQ5HY92 759 aa15.11■□□□□ 0.01
SHMT2-222ENST00000555774 MAPKAPK5Q8IW41 473 aa15.11■□□□□ 0.01
SHMT2-222ENST00000555774 CCDC24Q8N4L8 307 aa15.11■□□□□ 0.01
SHMT2-222ENST00000555774 CSGALNACT2Q8N6G5 542 aa15.11■□□□□ 0.01
SHMT2-222ENST00000555774 SLC44A5Q8NCS7 719 aa15.11■□□□□ 0.01
SHMT2-222ENST00000555774 DUSP9Q99956 384 aaKnown RBP15.11■□□□□ 0.01
SHMT2-222ENST00000555774 MYO6Q9UM54 1294 aa15.11■□□□□ 0.01
SHMT2-222ENST00000555774 SMCO2A6NFE2 343 aa15.11■□□□□ 0.01
SHMT2-222ENST00000555774 ATP2B4P23634 1241 aa15.11■□□□□ 0.01
SHMT2-222ENST00000555774 CYLC1P35663 651 aaPredicted RBP15.11■□□□□ 0.01
SHMT2-222ENST00000555774 CNNM4Q6P4Q7 775 aa15.11■□□□□ 0.01
SHMT2-222ENST00000555774 CCDC170Q8IYT3 715 aa15.11■□□□□ 0.01
SHMT2-222ENST00000555774 FAM163AQ96GL9 167 aaPredicted RBP15.11■□□□□ 0.01
SHMT2-222ENST00000555774 CHP1Q99653 195 aa15.11■□□□□ 0.01
SHMT2-222ENST00000555774 TTYH3Q9C0H2 523 aa15.11■□□□□ 0.01
SHMT2-222ENST00000555774 REXO2Q9Y3B8 237 aaKnown RBP15.11■□□□□ 0.01
SHMT2-222ENST00000555774 A0A1W2PQJ5 194 aa15.1■□□□□ 0.01
SHMT2-222ENST00000555774 CCNT1O60563 726 aaKnown RBP15.1■□□□□ 0.01
SHMT2-222ENST00000555774 IL1R1P14778 569 aa15.1■□□□□ 0.01
SHMT2-222ENST00000555774 OAS2P29728 719 aaKnown RBP15.1■□□□□ 0.01
SHMT2-222ENST00000555774 PDE4DQ08499 809 aa15.1■□□□□ 0.01
SHMT2-222ENST00000555774 GPS2Q13227 327 aa15.1■□□□□ 0.01
SHMT2-222ENST00000555774 TXNRD1Q16881 649 aa15.1■□□□□ 0.01
SHMT2-222ENST00000555774 LETM2Q2VYF4 491 aa15.1■□□□□ 0.01
SHMT2-222ENST00000555774 CNBD1Q8NA66 436 aa15.1■□□□□ 0.01
SHMT2-222ENST00000555774 CALML4Q96GE6 196 aa15.1■□□□□ 0.01
SHMT2-222ENST00000555774 PLIN4Q96Q06 1357 aa15.1■□□□□ 0.01
SHMT2-222ENST00000555774 TUBGCP2Q9BSJ2 902 aa15.1■□□□□ 0.01
SHMT2-222ENST00000555774 ZNHIT6Q9NWK9 470 aaKnown RBP15.1■□□□□ 0.01
SHMT2-222ENST00000555774 RFC4P35249 363 aa15.1■□□□□ 0.01
SHMT2-222ENST00000555774 ZBED6P86452 979 aa15.1■□□□□ 0.01
SHMT2-222ENST00000555774 CDK17Q00537 523 aa15.1■□□□□ 0.01
SHMT2-222ENST00000555774 GRIK5Q16478 980 aa15.1■□□□□ 0.01
SHMT2-222ENST00000555774 BEND6Q5SZJ8 279 aaPredicted RBP15.1■□□□□ 0.01
SHMT2-222ENST00000555774 HDXQ7Z353 690 aa15.1■□□□□ 0.01
SHMT2-222ENST00000555774 ZSCAN29Q8IWY8 852 aaPredicted RBP15.1■□□□□ 0.01
SHMT2-222ENST00000555774 TEX11Q8IYF3 940 aa15.1■□□□□ 0.01
SHMT2-222ENST00000555774 CD209Q9NNX6 404 aa15.1■□□□□ 0.01
SHMT2-222ENST00000555774 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.1■□□□□ 0.01
SHMT2-222ENST00000555774 STK17AQ9UEE5 414 aa15.1■□□□□ 0.01
SHMT2-222ENST00000555774 SAP30BPQ9UHR5 308 aaKnown RBP15.1■□□□□ 0.01
SHMT2-222ENST00000555774 GOLGA8HP0CJ92 632 aa15.09■□□□□ 0.01
SHMT2-222ENST00000555774 ASIC1P78348 528 aa15.09■□□□□ 0.01
SHMT2-222ENST00000555774 NFIXQ14938 502 aa15.09■□□□□ 0.01
SHMT2-222ENST00000555774 TRAPPC11Q7Z392 1133 aa15.09■□□□□ 0.01
SHMT2-222ENST00000555774 CERKQ8TCT0 537 aa15.09■□□□□ 0.01
SHMT2-222ENST00000555774 LRRC15Q8TF66 581 aa15.09■□□□□ 0.01
SHMT2-222ENST00000555774 ERGIC2Q96RQ1 377 aa15.09■□□□□ 0.01
SHMT2-222ENST00000555774 ZSWIM4Q9H7M6 989 aa15.09■□□□□ 0.01
SHMT2-222ENST00000555774 GAKO14976 1311 aa15.09■□□□□ 0.01
SHMT2-222ENST00000555774 ABCB11O95342 1321 aa15.09■□□□□ 0.01
SHMT2-222ENST00000555774 B4DLN1 442 aa15.09■□□□□ 0.01
SHMT2-222ENST00000555774 TRAPPC3LQ5T215 181 aa15.09■□□□□ 0.01
SHMT2-222ENST00000555774 WDR59Q6PJI9 974 aa15.09■□□□□ 0.01
SHMT2-222ENST00000555774 REXO1Q8N1G1 1221 aaKnown RBP15.09■□□□□ 0.01
SHMT2-222ENST00000555774 TBC1D22AQ8WUA7 517 aa15.09■□□□□ 0.01
SHMT2-222ENST00000555774 RPGRIP1Q96KN7 1286 aa15.09■□□□□ 0.01
SHMT2-222ENST00000555774 CNOT6LQ96LI5 555 aaKnown RBP15.09■□□□□ 0.01
SHMT2-222ENST00000555774 RIOX1Q9H6W3 641 aa15.09■□□□□ 0.01
SHMT2-222ENST00000555774 BAZ2BQ9UIF8 2168 aaKnown RBP15.08■□□□□ 0.01
SHMT2-222ENST00000555774 PVALEFA0A1B0GWK0 134 aa15.08■□□□□ 0
SHMT2-222ENST00000555774 EIF3CLB5ME19 914 aaKnown RBP15.08■□□□□ 0
SHMT2-222ENST00000555774 PES1O00541 588 aaKnown RBP15.08■□□□□ 0
SHMT2-222ENST00000555774 KRT86O43790 486 aa15.08■□□□□ 0
SHMT2-222ENST00000555774 EIF3JO75822 258 aaKnown RBP15.08■□□□□ 0
SHMT2-222ENST00000555774 FXR2P51116 673 aaKnown RBP eCLIP15.08■□□□□ 0
SHMT2-222ENST00000555774 HERVK_113P62684 666 aa15.08■□□□□ 0
SHMT2-222ENST00000555774 TBC1D8BQ0IIM8 1120 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms