RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 USO1O60763 962 aaKnown RBP19.58■□□□□ 0.72
SYNE3-202ENST00000553340 SHOX2O60902 331 aaPredicted RBP19.58■□□□□ 0.72
SYNE3-202ENST00000553340 GOLGA6DP0CG33 693 aa19.58■□□□□ 0.72
SYNE3-202ENST00000553340 FIGNQ5HY92 759 aa19.58■□□□□ 0.72
SYNE3-202ENST00000553340 ZNF384Q8TF68 577 aa19.58■□□□□ 0.72
SYNE3-202ENST00000553340 TMEM60Q9H2L4 133 aa19.58■□□□□ 0.72
SYNE3-202ENST00000553340 GOLGA6AQ9NYA3 693 aa19.58■□□□□ 0.72
SYNE3-202ENST00000553340 A0A1W2PQJ5 194 aa19.57■□□□□ 0.72
SYNE3-202ENST00000553340 NTSR2O95665 410 aa19.57■□□□□ 0.72
SYNE3-202ENST00000553340 EVX2Q03828 476 aa19.57■□□□□ 0.72
SYNE3-202ENST00000553340 MMGT1Q8N4V1 131 aa19.57■□□□□ 0.72
SYNE3-202ENST00000553340 IPO4Q8TEX9 1081 aaKnown RBP19.57■□□□□ 0.72
SYNE3-202ENST00000553340 AENQ8WTP8 325 aaKnown RBP19.57■□□□□ 0.72
SYNE3-202ENST00000553340 NOC4LQ9BVI4 516 aaKnown RBP19.57■□□□□ 0.72
SYNE3-202ENST00000553340 CRNKL1Q9BZJ0 848 aaKnown RBP19.57■□□□□ 0.72
SYNE3-202ENST00000553340 CUEDC2Q9H467 287 aa19.57■□□□□ 0.72
SYNE3-202ENST00000553340 MAGEF1Q9HAY2 307 aa19.57■□□□□ 0.72
SYNE3-202ENST00000553340 DCP1AQ9NPI6 582 aaPredicted RBP19.57■□□□□ 0.72
SYNE3-202ENST00000553340 SNX12Q9UMY4 172 aa19.57■□□□□ 0.72
SYNE3-202ENST00000553340 LAD1O00515 517 aa19.57■□□□□ 0.72
SYNE3-202ENST00000553340 TACC1O75410 805 aa19.57■□□□□ 0.72
SYNE3-202ENST00000553340 CCDC96Q2M329 555 aa19.57■□□□□ 0.72
SYNE3-202ENST00000553340 FKBP15Q5T1M5 1219 aa19.57■□□□□ 0.72
SYNE3-202ENST00000553340 RUBCNQ92622 972 aa19.57■□□□□ 0.72
SYNE3-202ENST00000553340 EEF2KMTQ96G04 330 aa19.57■□□□□ 0.72
SYNE3-202ENST00000553340 ERGIC2Q96RQ1 377 aa19.57■□□□□ 0.72
SYNE3-202ENST00000553340 KAT14Q9H8E8 782 aa19.57■□□□□ 0.72
SYNE3-202ENST00000553340 NIP7Q9Y221 180 aaKnown RBP eCLIP19.57■□□□□ 0.72
SYNE3-202ENST00000553340 ABCA3Q99758 1704 aa19.57■□□□□ 0.72
SYNE3-202ENST00000553340 RREB1Q92766 1687 aa19.57■□□□□ 0.72
SYNE3-202ENST00000553340 PPP1R2P41236 205 aa19.56■□□□□ 0.72
SYNE3-202ENST00000553340 ITIH3Q06033 890 aa19.56■□□□□ 0.72
SYNE3-202ENST00000553340 ANKRD40Q6AI12 368 aa19.56■□□□□ 0.72
SYNE3-202ENST00000553340 CREG2Q8IUH2 290 aa19.56■□□□□ 0.72
SYNE3-202ENST00000553340 EFCAB13Q8IY85 973 aa19.56■□□□□ 0.72
SYNE3-202ENST00000553340 IQCDQ96DY2 449 aa19.56■□□□□ 0.72
SYNE3-202ENST00000553340 LRWD1Q9UFC0 647 aa19.56■□□□□ 0.72
SYNE3-202ENST00000553340 A0A1B0GUL6 1792 aa19.56■□□□□ 0.72
SYNE3-202ENST00000553340 PDE4DQ08499 809 aa19.56■□□□□ 0.72
SYNE3-202ENST00000553340 RCSD1Q6JBY9 416 aa19.56■□□□□ 0.72
SYNE3-202ENST00000553340 FAM107BQ9H098 131 aa19.56■□□□□ 0.72
SYNE3-202ENST00000553340 M0R2N6 131 aa19.55■□□□□ 0.72
SYNE3-202ENST00000553340 ANKRD18AQ8IVF6 992 aa19.55■□□□□ 0.72
SYNE3-202ENST00000553340 ZSCAN29Q8IWY8 852 aaPredicted RBP19.55■□□□□ 0.72
SYNE3-202ENST00000553340 ATP8A2Q9NTI2 1148 aa19.55■□□□□ 0.72
SYNE3-202ENST00000553340 CCDC87Q9NVE4 849 aa19.55■□□□□ 0.72
SYNE3-202ENST00000553340 ARPP21Q9UBL0 812 aaPredicted RBP19.55■□□□□ 0.72
SYNE3-202ENST00000553340 PCDHA6Q9UN73 950 aa19.55■□□□□ 0.72
SYNE3-202ENST00000553340 PCDHA8Q9Y5H6 950 aa19.55■□□□□ 0.72
SYNE3-202ENST00000553340 ANKRD65E5RJM6 399 aa19.55■□□□□ 0.72
SYNE3-202ENST00000553340 PRLRP16471 622 aa19.55■□□□□ 0.72
SYNE3-202ENST00000553340 PRPHP41219 470 aa19.55■□□□□ 0.72
SYNE3-202ENST00000553340 INF2Q27J81 1249 aa19.55■□□□□ 0.72
SYNE3-202ENST00000553340 CCDC178Q5BJE1 867 aa19.55■□□□□ 0.72
SYNE3-202ENST00000553340 MIIPQ5JXC2 388 aa19.55■□□□□ 0.72
SYNE3-202ENST00000553340 PACS2Q86VP3 889 aa19.55■□□□□ 0.72
SYNE3-202ENST00000553340 NSUN4Q96CB9 384 aaKnown RBP19.55■□□□□ 0.72
SYNE3-202ENST00000553340 IFIH1Q9BYX4 1025 aaKnown RBP19.55■□□□□ 0.72
SYNE3-202ENST00000553340 TCP11L1Q9NUJ3 509 aa19.55■□□□□ 0.72
SYNE3-202ENST00000553340 WTIPA6NIX2 430 aaPredicted RBP19.55■□□□□ 0.72
SYNE3-202ENST00000553340 ZNF263O14978 683 aa19.55■□□□□ 0.72
SYNE3-202ENST00000553340 CAMTA2O94983 1202 aa19.55■□□□□ 0.72
SYNE3-202ENST00000553340 GALNT17Q6IS24 598 aa19.55■□□□□ 0.72
SYNE3-202ENST00000553340 INTS5Q6P9B9 1019 aaKnown RBP19.55■□□□□ 0.72
SYNE3-202ENST00000553340 SND1Q7KZF4 910 aaKnown RBP eCLIP19.55■□□□□ 0.72
SYNE3-202ENST00000553340 ZNF572Q7Z3I7 529 aaPredicted RBP19.55■□□□□ 0.72
SYNE3-202ENST00000553340 PLCG1P19174 1290 aa19.54■□□□□ 0.72
SYNE3-202ENST00000553340 TYW1BQ6NUM6 668 aa19.54■□□□□ 0.72
SYNE3-202ENST00000553340 KRT26Q7Z3Y9 468 aa19.54■□□□□ 0.72
SYNE3-202ENST00000553340 FAM84BQ96KN1 310 aaPredicted RBP19.54■□□□□ 0.72
SYNE3-202ENST00000553340 AK8Q96MA6 479 aa19.54■□□□□ 0.72
SYNE3-202ENST00000553340 TRIM9Q9C026 710 aa19.54■□□□□ 0.72
SYNE3-202ENST00000553340 PLAGL2Q9UPG8 496 aa19.54■□□□□ 0.72
SYNE3-202ENST00000553340 CYP2D6P10635 497 aa19.54■□□□□ 0.72
SYNE3-202ENST00000553340 HNRNPH3P31942 346 aaKnown RBP19.54■□□□□ 0.72
SYNE3-202ENST00000553340 GNAQP50148 359 aa19.54■□□□□ 0.72
SYNE3-202ENST00000553340 IRAK1P51617 712 aa19.54■□□□□ 0.72
SYNE3-202ENST00000553340 MECOMQ03112 1051 aa19.54■□□□□ 0.72
SYNE3-202ENST00000553340 STK4Q13043 487 aa19.54■□□□□ 0.72
SYNE3-202ENST00000553340 PPFIA1Q13136 1202 aa19.54■□□□□ 0.72
SYNE3-202ENST00000553340 SBK1Q52WX2 424 aa19.54■□□□□ 0.72
SYNE3-202ENST00000553340 TMED8Q6PL24 325 aaPredicted RBP19.54■□□□□ 0.72
SYNE3-202ENST00000553340 CABP7Q86V35 215 aa19.54■□□□□ 0.72
SYNE3-202ENST00000553340 DAGLBQ8NCG7 672 aa19.54■□□□□ 0.72
SYNE3-202ENST00000553340 LRRC1Q9BTT6 524 aa19.54■□□□□ 0.72
SYNE3-202ENST00000553340 SH2D4AQ9H788 454 aa19.54■□□□□ 0.72
SYNE3-202ENST00000553340 PCDHA13Q9Y5I0 950 aa19.54■□□□□ 0.72
SYNE3-202ENST00000553340 ASIC1P78348 528 aa19.53■□□□□ 0.72
SYNE3-202ENST00000553340 SKIDA1Q1XH10 827 aa19.53■□□□□ 0.72
SYNE3-202ENST00000553340 PNMA1Q8ND90 353 aa19.53■□□□□ 0.72
SYNE3-202ENST00000553340 SPATA4Q8NEY3 305 aa19.53■□□□□ 0.72
SYNE3-202ENST00000553340 SMCR8Q8TEV9 937 aaPredicted RBP19.53■□□□□ 0.72
SYNE3-202ENST00000553340 LRRC15Q8TF66 581 aa19.53■□□□□ 0.72
SYNE3-202ENST00000553340 CAPN6Q9Y6Q1 641 aa19.53■□□□□ 0.72
SYNE3-202ENST00000553340 PHLPP1O60346 1717 aa19.53■□□□□ 0.72
SYNE3-202ENST00000553340 GOLGA8KD6RF30 607 aa19.53■□□□□ 0.72
SYNE3-202ENST00000553340 TCP1P17987 556 aaKnown RBP19.53■□□□□ 0.72
SYNE3-202ENST00000553340 GBP6Q6ZN66 633 aa19.53■□□□□ 0.72
SYNE3-202ENST00000553340 DGKHQ86XP1 1220 aa19.53■□□□□ 0.72
SYNE3-202ENST00000553340 STAG2Q8N3U4 1231 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms