RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 ZNF713Q8N859 430 aaPredicted RBP20.86■□□□□ 0.93
PRPF40B-208ENST00000548436 KCNQ5Q9NR82 932 aa20.86■□□□□ 0.93
PRPF40B-208ENST00000548436 TAB2Q9NYJ8 693 aa20.86■□□□□ 0.93
PRPF40B-208ENST00000548436 EDIL3O43854 480 aa20.85■□□□□ 0.93
PRPF40B-208ENST00000548436 MFAP3LO75121 409 aa20.85■□□□□ 0.93
PRPF40B-208ENST00000548436 MMP10P09238 476 aa20.85■□□□□ 0.93
PRPF40B-208ENST00000548436 PDE6BP35913 854 aa20.85■□□□□ 0.93
PRPF40B-208ENST00000548436 SPAG1Q07617 926 aa20.85■□□□□ 0.93
PRPF40B-208ENST00000548436 NFIAQ12857 509 aa20.85■□□□□ 0.93
PRPF40B-208ENST00000548436 MMTAG2Q9BU76 263 aaKnown RBP20.85■□□□□ 0.93
PRPF40B-208ENST00000548436 CUEDC2Q9H467 287 aa20.85■□□□□ 0.93
PRPF40B-208ENST00000548436 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.85■□□□□ 0.93
PRPF40B-208ENST00000548436 SIPA1L1O43166 1804 aa20.85■□□□□ 0.93
PRPF40B-208ENST00000548436 FXR1P51114 621 aaKnown RBP eCLIP20.85■□□□□ 0.93
PRPF40B-208ENST00000548436 ZNF543Q08ER8 600 aa20.85■□□□□ 0.93
PRPF40B-208ENST00000548436 ELF2Q15723 593 aa20.85■□□□□ 0.93
PRPF40B-208ENST00000548436 RAD9BQ6WBX8 426 aa20.85■□□□□ 0.93
PRPF40B-208ENST00000548436 CREBRFQ8IUR6 639 aa20.85■□□□□ 0.93
PRPF40B-208ENST00000548436 GIMAP8Q8ND71 665 aaPredicted RBP20.85■□□□□ 0.93
PRPF40B-208ENST00000548436 TEKT1Q969V4 418 aa20.85■□□□□ 0.93
PRPF40B-208ENST00000548436 MASTLQ96GX5 879 aa20.85■□□□□ 0.93
PRPF40B-208ENST00000548436 JMJD4Q9H9V9 463 aa20.85■□□□□ 0.93
PRPF40B-208ENST00000548436 CGNQ9P2M7 1197 aaKnown RBP20.85■□□□□ 0.93
PRPF40B-208ENST00000548436 MYO3BQ8WXR4 1341 aa20.85■□□□□ 0.93
PRPF40B-208ENST00000548436 GOLGA6L9A6NEM1 432 aa20.84■□□□□ 0.93
PRPF40B-208ENST00000548436 G3V3G9 751 aa20.84■□□□□ 0.93
PRPF40B-208ENST00000548436 H7C1D1 291 aa20.84■□□□□ 0.93
PRPF40B-208ENST00000548436 DCAF8Q5TAQ9 597 aa20.84■□□□□ 0.93
PRPF40B-208ENST00000548436 TTBK2Q6IQ55 1244 aa20.84■□□□□ 0.93
PRPF40B-208ENST00000548436 ZFPM1Q8IX07 1006 aa20.84■□□□□ 0.93
PRPF40B-208ENST00000548436 DBNDD1Q9H9R9 158 aa20.84■□□□□ 0.93
PRPF40B-208ENST00000548436 SCN9AQ15858 1988 aa20.84■□□□□ 0.93
PRPF40B-208ENST00000548436 ADCY7P51828 1080 aa20.84■□□□□ 0.93
PRPF40B-208ENST00000548436 ADGRF4Q8IZF3 695 aa20.84■□□□□ 0.93
PRPF40B-208ENST00000548436 MTMR9Q96QG7 549 aa20.84■□□□□ 0.93
PRPF40B-208ENST00000548436 WDR24Q96S15 920 aa20.84■□□□□ 0.93
PRPF40B-208ENST00000548436 NAA15Q9BXJ9 866 aaKnown RBP20.84■□□□□ 0.93
PRPF40B-208ENST00000548436 MRPL44Q9H9J2 332 aaKnown RBP20.84■□□□□ 0.93
PRPF40B-208ENST00000548436 MAGEF1Q9HAY2 307 aa20.84■□□□□ 0.93
PRPF40B-208ENST00000548436 MYH7BA7E2Y1 1941 aa20.83■□□□□ 0.93
PRPF40B-208ENST00000548436 C10orf71Q711Q0 1435 aa20.83■□□□□ 0.93
PRPF40B-208ENST00000548436 PPP1R11O60927 126 aaPredicted RBP20.83■□□□□ 0.93
PRPF40B-208ENST00000548436 CRKP46108 304 aa20.83■□□□□ 0.93
PRPF40B-208ENST00000548436 ORC2Q13416 577 aaPredicted RBP20.83■□□□□ 0.93
PRPF40B-208ENST00000548436 GLIPR1L2Q4G1C9 344 aa20.83■□□□□ 0.93
PRPF40B-208ENST00000548436 TRIM9Q9C026 710 aa20.83■□□□□ 0.93
PRPF40B-208ENST00000548436 PCDHAC2Q9Y5I4 1007 aa20.83■□□□□ 0.93
PRPF40B-208ENST00000548436 PARP3Q9Y6F1 533 aa20.83■□□□□ 0.93
PRPF40B-208ENST00000548436 RNF225M0QZC1 329 aaPredicted RBP20.82■□□□□ 0.92
PRPF40B-208ENST00000548436 PLSCR1O15162 318 aa20.82■□□□□ 0.92
PRPF40B-208ENST00000548436 SLC37A4O43826 429 aa20.82■□□□□ 0.92
PRPF40B-208ENST00000548436 HMGB2P26583 209 aaKnown RBP20.82■□□□□ 0.92
PRPF40B-208ENST00000548436 TXKP42681 527 aa20.82■□□□□ 0.92
PRPF40B-208ENST00000548436 CNGA4Q8IV77 575 aa20.82■□□□□ 0.92
PRPF40B-208ENST00000548436 ANKRD20A12PQ8NF67 263 aa20.82■□□□□ 0.92
PRPF40B-208ENST00000548436 PNMA6FA0A0J9YX94 578 aa20.82■□□□□ 0.92
PRPF40B-208ENST00000548436 MPHOSPH10O00566 681 aaKnown RBP20.82■□□□□ 0.92
PRPF40B-208ENST00000548436 URI1O94763 535 aaPredicted RBP20.82■□□□□ 0.92
PRPF40B-208ENST00000548436 TDP2O95551 362 aa20.82■□□□□ 0.92
PRPF40B-208ENST00000548436 GNG11P61952 73 aa20.82■□□□□ 0.92
PRPF40B-208ENST00000548436 SEMA3FQ13275 785 aa20.82■□□□□ 0.92
PRPF40B-208ENST00000548436 ZNF622Q969S3 477 aaKnown RBP eCLIP20.82■□□□□ 0.92
PRPF40B-208ENST00000548436 C7orf25Q9BPX7 421 aa20.82■□□□□ 0.92
PRPF40B-208ENST00000548436 ZNF646O15015 1829 aaPredicted RBP20.82■□□□□ 0.92
PRPF40B-208ENST00000548436 HLA-DOAP06340 250 aa20.81■□□□□ 0.92
PRPF40B-208ENST00000548436 CCDC175P0C221 793 aa20.81■□□□□ 0.92
PRPF40B-208ENST00000548436 FECHP22830 423 aa20.81■□□□□ 0.92
PRPF40B-208ENST00000548436 SLC16A2P36021 539 aa20.81■□□□□ 0.92
PRPF40B-208ENST00000548436 ATP2B2Q01814 1243 aa20.81■□□□□ 0.92
PRPF40B-208ENST00000548436 CALCRLQ16602 461 aa20.81■□□□□ 0.92
PRPF40B-208ENST00000548436 ERCC6LQ2NKX8 1250 aa20.81■□□□□ 0.92
PRPF40B-208ENST00000548436 MSL1Q68DK7 614 aa20.81■□□□□ 0.92
PRPF40B-208ENST00000548436 TMX4Q9H1E5 349 aaPredicted RBP20.81■□□□□ 0.92
PRPF40B-208ENST00000548436 DNAJC18Q9H819 358 aa20.81■□□□□ 0.92
PRPF40B-208ENST00000548436 ADGRG1Q9Y653 693 aa20.81■□□□□ 0.92
PRPF40B-208ENST00000548436 PSMA7O14818 248 aa20.81■□□□□ 0.92
PRPF40B-208ENST00000548436 APBA3O96018 575 aa20.81■□□□□ 0.92
PRPF40B-208ENST00000548436 CACNB3P54284 484 aa20.81■□□□□ 0.92
PRPF40B-208ENST00000548436 STIM1Q13586 685 aa20.81■□□□□ 0.92
PRPF40B-208ENST00000548436 TTI2Q6NXR4 508 aa20.81■□□□□ 0.92
PRPF40B-208ENST00000548436 KCTD1Q719H9 257 aa20.81■□□□□ 0.92
PRPF40B-208ENST00000548436 PODNQ7Z5L7 613 aa20.81■□□□□ 0.92
PRPF40B-208ENST00000548436 CCDC51Q96ER9 411 aa20.81■□□□□ 0.92
PRPF40B-208ENST00000548436 SRRTQ9BXP5 876 aaKnown RBP20.81■□□□□ 0.92
PRPF40B-208ENST00000548436 RIC8AQ9NPQ8 531 aa20.81■□□□□ 0.92
PRPF40B-208ENST00000548436 SLX4Q8IY92 1834 aa20.8■□□□□ 0.92
PRPF40B-208ENST00000548436 A0A0U1RQJ8 604 aa20.8■□□□□ 0.92
PRPF40B-208ENST00000548436 UBXN1Q04323 297 aa20.8■□□□□ 0.92
PRPF40B-208ENST00000548436 PDE4DQ08499 809 aa20.8■□□□□ 0.92
PRPF40B-208ENST00000548436 UBE2SQ16763 222 aa20.8■□□□□ 0.92
PRPF40B-208ENST00000548436 ATRIPQ8WXE1 791 aa20.8■□□□□ 0.92
PRPF40B-208ENST00000548436 ZDHHC15Q96MV8 337 aa20.8■□□□□ 0.92
PRPF40B-208ENST00000548436 CASQ1P31415 396 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 FXR2P51116 673 aaKnown RBP eCLIP20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 ASIC1P78348 528 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 STK4Q13043 487 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 GRB10Q13322 594 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 KIAA0825Q8IV33 1275 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 ZNF397Q8NF99 534 aaPredicted RBP20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 KIFC2Q96AC6 838 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms