RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 RASGRP2Q7LDG7 609 aa10.04□□□□□ -0.8
USP28-215ENST00000545608 STAG1Q8WVM7 1258 aa10.04□□□□□ -0.8
USP28-215ENST00000545608 GMCL1Q96IK5 515 aa10.04□□□□□ -0.8
USP28-215ENST00000545608 AGBL1Q96MI9 1066 aa10.04□□□□□ -0.8
USP28-215ENST00000545608 FAM161BQ96MY7 647 aa10.04□□□□□ -0.8
USP28-215ENST00000545608 TSEN34Q9BSV6 310 aaKnown RBP10.04□□□□□ -0.8
USP28-215ENST00000545608 HOMER2Q9NSB8 354 aa10.04□□□□□ -0.8
USP28-215ENST00000545608 FBXO40Q9UH90 709 aa10.04□□□□□ -0.8
USP28-215ENST00000545608 ISY1Q9ULR0 285 aaKnown RBP10.04□□□□□ -0.8
USP28-215ENST00000545608 SOWAHBA6NEL2 793 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 TSPY2A6NKD2 308 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 DLL1O00548 723 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 KIAA0355O15063 1070 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 PQBP1O60828 265 aaKnown RBP10.03□□□□□ -0.8
USP28-215ENST00000545608 DUSP11O75319 330 aaKnown RBP10.03□□□□□ -0.8
USP28-215ENST00000545608 CLTBP09497 229 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 FDX1P10109 184 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 SLC1A4P43007 532 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 STAT2P52630 851 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 EPHB4P54760 987 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 CNTN2Q02246 1040 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 CCDC144BQ3MJ40 725 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 RCSD1Q6JBY9 416 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 KCTD1Q719H9 257 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 ARMCX2Q7L311 632 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 FAM160B2Q86V87 743 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 FAM133AQ8N9E0 248 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 CHURC1Q8WUH1 139 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 EVI5LQ96CN4 794 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 GUCD1Q96NT3 240 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 KATNBL1Q9H079 304 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 ABHD16BQ9H3Z7 469 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 STARD7Q9NQZ5 370 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 RNF146Q9NTX7 359 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 ANAPC4Q9UJX5 808 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 STX8Q9UNK0 236 aa10.03□□□□□ -0.8
USP28-215ENST00000545608 MOXD2PA6NHM9 499 aa10.02□□□□□ -0.81
USP28-215ENST00000545608 RANBP6O60518 1105 aaKnown RBP10.02□□□□□ -0.81
USP28-215ENST00000545608 PLA2G6O60733 806 aa10.02□□□□□ -0.81
USP28-215ENST00000545608 FGRP09769 529 aa10.02□□□□□ -0.81
USP28-215ENST00000545608 ALAS1P13196 640 aa10.02□□□□□ -0.81
USP28-215ENST00000545608 RAG1P15918 1043 aa10.02□□□□□ -0.81
USP28-215ENST00000545608 NOVP48745 357 aa10.02□□□□□ -0.81
USP28-215ENST00000545608 FAAP100Q0VG06 881 aa10.02□□□□□ -0.81
USP28-215ENST00000545608 IKQ13123 557 aaPredicted RBP10.02□□□□□ -0.81
USP28-215ENST00000545608 HDAC1Q13547 482 aaPredicted RBP10.02□□□□□ -0.81
USP28-215ENST00000545608 ALX1Q15699 326 aa10.02□□□□□ -0.81
USP28-215ENST00000545608 CCDC174Q6PII3 467 aa10.02□□□□□ -0.81
USP28-215ENST00000545608 ANKRD33Q7Z3H0 272 aa10.02□□□□□ -0.81
USP28-215ENST00000545608 CCDC144CPQ8IYA2 1237 aa10.02□□□□□ -0.81
USP28-215ENST00000545608 NUP133Q8WUM0 1156 aa10.02□□□□□ -0.81
USP28-215ENST00000545608 FAM227BQ96M60 508 aa10.02□□□□□ -0.81
USP28-215ENST00000545608 TOX2Q96NM4 488 aa10.02□□□□□ -0.81
USP28-215ENST00000545608 TRERF1Q96PN7 1200 aa10.02□□□□□ -0.81
USP28-215ENST00000545608 ACAD9Q9H845 621 aa10.02□□□□□ -0.81
USP28-215ENST00000545608 A1CFQ9NQ94 594 aaKnown RBP10.02□□□□□ -0.81
USP28-215ENST00000545608 HELLSQ9NRZ9 838 aa10.02□□□□□ -0.81
USP28-215ENST00000545608 TMEM39AQ9NV64 488 aa10.02□□□□□ -0.81
USP28-215ENST00000545608 PRR12Q9ULL5 1215 aa10.02□□□□□ -0.81
USP28-215ENST00000545608 MTMR7Q9Y216 660 aa10.02□□□□□ -0.81
USP28-215ENST00000545608 DDX49Q9Y6V7 483 aaKnown RBP10.02□□□□□ -0.81
USP28-215ENST00000545608 LAMA3Q16787 3333 aa10.02□□□□□ -0.81
USP28-215ENST00000545608 A0A0D9SFI3 127 aa10.01□□□□□ -0.81
USP28-215ENST00000545608 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.01□□□□□ -0.81
USP28-215ENST00000545608 GRXCR2A6NFK2 248 aa10.01□□□□□ -0.81
USP28-215ENST00000545608 CTAGE5O15320 804 aa10.01□□□□□ -0.81
USP28-215ENST00000545608 ORC4O43929 436 aa10.01□□□□□ -0.81
USP28-215ENST00000545608 FGAP02671 866 aa10.01□□□□□ -0.81
USP28-215ENST00000545608 ASGR1P07306 291 aa10.01□□□□□ -0.81
USP28-215ENST00000545608 C6orf222P0C671 652 aaPredicted RBP10.01□□□□□ -0.81
USP28-215ENST00000545608 CST5P28325 142 aaPredicted RBP10.01□□□□□ -0.81
USP28-215ENST00000545608 CDK7P50613 346 aa10.01□□□□□ -0.81
USP28-215ENST00000545608 GJA9P57773 515 aa10.01□□□□□ -0.81
USP28-215ENST00000545608 TKFCQ3LXA3 575 aa10.01□□□□□ -0.81
USP28-215ENST00000545608 MUM1L1Q5H9M0 696 aa10.01□□□□□ -0.81
USP28-215ENST00000545608 PPP4R3BQ5MIZ7 849 aa10.01□□□□□ -0.81
USP28-215ENST00000545608 ZNF697Q5TEC3 545 aa10.01□□□□□ -0.81
USP28-215ENST00000545608 TTBK2Q6IQ55 1244 aa10.01□□□□□ -0.81
USP28-215ENST00000545608 UPF3AQ9H1J1 476 aaKnown RBP10.01□□□□□ -0.81
USP28-215ENST00000545608 ASTN1O14525 1302 aa10.01□□□□□ -0.81
USP28-215ENST00000545608 LTBP2Q14767 1821 aa10□□□□□ -0.81
USP28-215ENST00000545608 PLXNA1Q9UIW2 1896 aa10□□□□□ -0.81
USP28-215ENST00000545608 DCDC2CA8MYV0 355 aa10□□□□□ -0.81
USP28-215ENST00000545608 HSPD1P10809 573 aaKnown RBP10□□□□□ -0.81
USP28-215ENST00000545608 PTGS1P23219 599 aa10□□□□□ -0.81
USP28-215ENST00000545608 SLC16A2P36021 539 aa10□□□□□ -0.81
USP28-215ENST00000545608 NKX3-2P78367 333 aa10□□□□□ -0.81
USP28-215ENST00000545608 SMAD3P84022 425 aaKnown RBP10□□□□□ -0.81
USP28-215ENST00000545608 BEX3Q00994 111 aa10□□□□□ -0.81
USP28-215ENST00000545608 NMIQ13287 307 aaPredicted RBP10□□□□□ -0.81
USP28-215ENST00000545608 CCDC96Q2M329 555 aa10□□□□□ -0.81
USP28-215ENST00000545608 MCMDC2Q4G0Z9 681 aa10□□□□□ -0.81
USP28-215ENST00000545608 RRP12Q5JTH9 1297 aaKnown RBP10□□□□□ -0.81
USP28-215ENST00000545608 GNASQ5JWF2 1037 aa10□□□□□ -0.81
USP28-215ENST00000545608 TMEM63BQ5T3F8 832 aa10□□□□□ -0.81
USP28-215ENST00000545608 ZNF589Q86UQ0 364 aaPredicted RBP10□□□□□ -0.81
USP28-215ENST00000545608 PCSK9Q8NBP7 692 aaKnown RBP10□□□□□ -0.81
USP28-215ENST00000545608 VTI1AQ96AJ9 217 aa10□□□□□ -0.81
USP28-215ENST00000545608 GLT1D1Q96MS3 346 aa10□□□□□ -0.81
USP28-215ENST00000545608 PURBQ96QR8 312 aaKnown RBP10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms