RNA–Protein interactions for RNA: ENST00000533946.5

SSBP3-215, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-215ENST00000533946 USH1GQ495M9 461 aa11.33□□□□□ -0.6
SSBP3-215ENST00000533946 CCSAPQ6IQ19 270 aaPredicted RBP11.33□□□□□ -0.6
SSBP3-215ENST00000533946 SLC39A5Q6ZMH5 540 aa11.33□□□□□ -0.6
SSBP3-215ENST00000533946 FBXO16Q8IX29 292 aaPredicted RBP11.33□□□□□ -0.6
SSBP3-215ENST00000533946 PNMA1Q8ND90 353 aa11.33□□□□□ -0.6
SSBP3-215ENST00000533946 CHST13Q8NET6 341 aa11.33□□□□□ -0.6
SSBP3-215ENST00000533946 ANKS1AQ92625 1134 aa11.33□□□□□ -0.6
SSBP3-215ENST00000533946 TRIM43Q96BQ3 446 aaPredicted RBP11.33□□□□□ -0.6
SSBP3-215ENST00000533946 LSG1Q9H089 658 aaKnown RBP11.33□□□□□ -0.6
SSBP3-215ENST00000533946 ACAD9Q9H845 621 aa11.33□□□□□ -0.6
SSBP3-215ENST00000533946 XPNPEP3Q9NQH7 507 aa11.33□□□□□ -0.6
SSBP3-215ENST00000533946 ATP11BQ9Y2G3 1177 aa11.33□□□□□ -0.6
SSBP3-215ENST00000533946 CTDP1Q9Y5B0 961 aaPredicted RBP11.33□□□□□ -0.6
SSBP3-215ENST00000533946 CHD9Q3L8U1 2897 aa11.33□□□□□ -0.6
SSBP3-215ENST00000533946 E7EWF7 191 aa11.32□□□□□ -0.6
SSBP3-215ENST00000533946 POTEB2H3BUK9 544 aa11.32□□□□□ -0.6
SSBP3-215ENST00000533946 ICAM1P05362 532 aa11.32□□□□□ -0.6
SSBP3-215ENST00000533946 OAZ1P54368 228 aa11.32□□□□□ -0.6
SSBP3-215ENST00000533946 EPHB4P54760 987 aa11.32□□□□□ -0.6
SSBP3-215ENST00000533946 TAPT1Q6NXT6 567 aa11.32□□□□□ -0.6
SSBP3-215ENST00000533946 TICAM2Q86XR7 235 aa11.32□□□□□ -0.6
SSBP3-215ENST00000533946 RAB11FIP4Q86YS3 637 aa11.32□□□□□ -0.6
SSBP3-215ENST00000533946 ADGRF4Q8IZF3 695 aa11.32□□□□□ -0.6
SSBP3-215ENST00000533946 KLHDC9Q8NEP7 349 aa11.32□□□□□ -0.6
SSBP3-215ENST00000533946 ESR2Q92731 530 aa11.32□□□□□ -0.6
SSBP3-215ENST00000533946 ZFP91Q96JP5 570 aaPredicted RBP11.32□□□□□ -0.6
SSBP3-215ENST00000533946 JMJD4Q9H9V9 463 aa11.32□□□□□ -0.6
SSBP3-215ENST00000533946 RBM8AQ9Y5S9 174 aaKnown RBP11.32□□□□□ -0.6
SSBP3-215ENST00000533946 NR2E3Q9Y5X4 410 aa11.32□□□□□ -0.6
SSBP3-215ENST00000533946 MYH6P13533 1939 aa11.32□□□□□ -0.6
SSBP3-215ENST00000533946 A0A1W2PQ45 241 aaPredicted RBP11.31□□□□□ -0.6
SSBP3-215ENST00000533946 A0A1W2PQY0 241 aa11.31□□□□□ -0.6
SSBP3-215ENST00000533946 OPLAHO14841 1288 aa11.31□□□□□ -0.6
SSBP3-215ENST00000533946 SMPD1P17405 629 aa11.31□□□□□ -0.6
SSBP3-215ENST00000533946 CALML3P27482 149 aa11.31□□□□□ -0.6
SSBP3-215ENST00000533946 TLE2Q04725 743 aa11.31□□□□□ -0.6
SSBP3-215ENST00000533946 KCNA10Q16322 511 aa11.31□□□□□ -0.6
SSBP3-215ENST00000533946 IMMTQ16891 758 aaKnown RBP11.31□□□□□ -0.6
SSBP3-215ENST00000533946 COPS5Q92905 334 aa11.31□□□□□ -0.6
SSBP3-215ENST00000533946 MAP4K1Q92918 833 aa11.31□□□□□ -0.6
SSBP3-215ENST00000533946 TTC14Q96N46 770 aa11.31□□□□□ -0.6
SSBP3-215ENST00000533946 MYL10Q9BUA6 226 aa11.31□□□□□ -0.6
SSBP3-215ENST00000533946 LRRC2Q9BYS8 371 aa11.31□□□□□ -0.6
SSBP3-215ENST00000533946 PHF24Q9UPV7 400 aa11.31□□□□□ -0.6
SSBP3-215ENST00000533946 GRIN2DO15399 1336 aa11.31□□□□□ -0.6
SSBP3-215ENST00000533946 SYNGAP1Q96PV0 1343 aa11.31□□□□□ -0.6
SSBP3-215ENST00000533946 REV3LO60673 3130 aa11.31□□□□□ -0.6
SSBP3-215ENST00000533946 HIP1O00291 1037 aa11.3□□□□□ -0.6
SSBP3-215ENST00000533946 CYTH3O43739 400 aa11.3□□□□□ -0.6
SSBP3-215ENST00000533946 RARBP10826 455 aa11.3□□□□□ -0.6
SSBP3-215ENST00000533946 AKR1A1P14550 325 aa11.3□□□□□ -0.6
SSBP3-215ENST00000533946 MFAP1P55081 439 aaKnown RBP11.3□□□□□ -0.6
SSBP3-215ENST00000533946 QRICH1Q2TAL8 776 aa11.3□□□□□ -0.6
SSBP3-215ENST00000533946 C9orf50Q5SZB4 431 aa11.3□□□□□ -0.6
SSBP3-215ENST00000533946 ZNF467Q7Z7K2 595 aaPredicted RBP11.3□□□□□ -0.6
SSBP3-215ENST00000533946 DGKHQ86XP1 1220 aa11.3□□□□□ -0.6
SSBP3-215ENST00000533946 MB21D2Q8IYB1 491 aaPredicted RBP11.3□□□□□ -0.6
SSBP3-215ENST00000533946 PIBF1Q8WXW3 757 aa11.3□□□□□ -0.6
SSBP3-215ENST00000533946 ESYT1Q9BSJ8 1104 aa11.3□□□□□ -0.6
SSBP3-215ENST00000533946 RNF41Q9H4P4 317 aaPredicted RBP11.3□□□□□ -0.6
SSBP3-215ENST00000533946 SLC5A4Q9NY91 659 aa11.3□□□□□ -0.6
SSBP3-215ENST00000533946 MAD2L2Q9UI95 211 aa11.3□□□□□ -0.6
SSBP3-215ENST00000533946 UNC80Q8N2C7 3258 aa11.29□□□□□ -0.6
SSBP3-215ENST00000533946 PTPDC1A2A3K4 754 aa11.29□□□□□ -0.6
SSBP3-215ENST00000533946 MSCO60682 206 aa11.29□□□□□ -0.6
SSBP3-215ENST00000533946 ARIH2O95376 493 aa11.29□□□□□ -0.6
SSBP3-215ENST00000533946 RXRAP19793 462 aa11.29□□□□□ -0.6
SSBP3-215ENST00000533946 COPB2P35606 906 aa11.29□□□□□ -0.6
SSBP3-215ENST00000533946 ALDH5A1P51649 535 aaPredicted RBP11.29□□□□□ -0.6
SSBP3-215ENST00000533946 ACLYP53396 1101 aa11.29□□□□□ -0.6
SSBP3-215ENST00000533946 RPS6P62753 249 aaKnown RBP11.29□□□□□ -0.6
SSBP3-215ENST00000533946 SNX17Q15036 470 aa11.29□□□□□ -0.6
SSBP3-215ENST00000533946 CDC37Q16543 378 aaPredicted RBP11.29□□□□□ -0.6
SSBP3-215ENST00000533946 Q7L0L9 218 aa11.29□□□□□ -0.6
SSBP3-215ENST00000533946 RASEFQ8IZ41 740 aa11.29□□□□□ -0.6
SSBP3-215ENST00000533946 CMTR1Q8N1G2 835 aaKnown RBP11.29□□□□□ -0.6
SSBP3-215ENST00000533946 ARRDC4Q8NCT1 418 aa11.29□□□□□ -0.6
SSBP3-215ENST00000533946 IGDCC4Q8TDY8 1250 aa11.29□□□□□ -0.6
SSBP3-215ENST00000533946 TCEANC2Q96MN5 208 aa11.29□□□□□ -0.6
SSBP3-215ENST00000533946 TAAR1Q96RJ0 339 aa11.29□□□□□ -0.6
SSBP3-215ENST00000533946 KAT14Q9H8E8 782 aa11.29□□□□□ -0.6
SSBP3-215ENST00000533946 PDLIM7Q9NR12 457 aa11.29□□□□□ -0.6
SSBP3-215ENST00000533946 FAM184BQ9ULE4 1060 aa11.29□□□□□ -0.6
SSBP3-215ENST00000533946 GNEQ9Y223 722 aaKnown RBP11.29□□□□□ -0.6
SSBP3-215ENST00000533946 CNPY2Q9Y2B0 182 aa11.29□□□□□ -0.6
SSBP3-215ENST00000533946 CHD7Q9P2D1 2997 aa11.29□□□□□ -0.6
SSBP3-215ENST00000533946 PALM3A6NDB9 673 aaPredicted RBP11.28□□□□□ -0.6
SSBP3-215ENST00000533946 KBTBD13C9JR72 458 aa11.28□□□□□ -0.6
SSBP3-215ENST00000533946 SLC27A2O14975 620 aa11.28□□□□□ -0.6
SSBP3-215ENST00000533946 DYNC1LI2O43237 492 aaPredicted RBP11.28□□□□□ -0.6
SSBP3-215ENST00000533946 PQBP1O60828 265 aaKnown RBP11.28□□□□□ -0.6
SSBP3-215ENST00000533946 DUSP11O75319 330 aaKnown RBP11.28□□□□□ -0.6
SSBP3-215ENST00000533946 ASGR1P07306 291 aa11.28□□□□□ -0.6
SSBP3-215ENST00000533946 C6orf222P0C671 652 aaPredicted RBP11.28□□□□□ -0.6
SSBP3-215ENST00000533946 PCP11498 1178 aaKnown RBP11.28□□□□□ -0.6
SSBP3-215ENST00000533946 PSMC6P62333 389 aa11.28□□□□□ -0.6
SSBP3-215ENST00000533946 CXCL17Q6UXB2 119 aa11.28□□□□□ -0.6
SSBP3-215ENST00000533946 BADQ92934 168 aa11.28□□□□□ -0.6
SSBP3-215ENST00000533946 KRT23Q9C075 422 aa11.28□□□□□ -0.6
SSBP3-215ENST00000533946 UPF3AQ9H1J1 476 aaKnown RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms