RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 HMX2A2RU54 273 aa10.13□□□□□ -0.79
NUP54-215ENST00000514313 AQP7O14520 342 aa10.13□□□□□ -0.79
NUP54-215ENST00000514313 ENOX1Q8TC92 643 aaKnown RBP10.13□□□□□ -0.79
NUP54-215ENST00000514313 C7orf69Q9H7B7 122 aa10.13□□□□□ -0.79
NUP54-215ENST00000514313 SRFP11831 508 aa10.12□□□□□ -0.79
NUP54-215ENST00000514313 CHRNA4P43681 627 aa10.12□□□□□ -0.79
NUP54-215ENST00000514313 ACBD5Q5T8D3 534 aaPredicted RBP10.12□□□□□ -0.79
NUP54-215ENST00000514313 LHFPL2Q6ZUX7 228 aa10.12□□□□□ -0.79
NUP54-215ENST00000514313 ALYREFQ86V81 257 aaKnown RBP10.12□□□□□ -0.79
NUP54-215ENST00000514313 ZNF655Q8N720 491 aaPredicted RBP10.12□□□□□ -0.79
NUP54-215ENST00000514313 TCTN2Q96GX1 697 aa10.12□□□□□ -0.79
NUP54-215ENST00000514313 FCRL3Q96P31 734 aaPredicted RBP10.12□□□□□ -0.79
NUP54-215ENST00000514313 PHF20Q9BVI0 1012 aa10.12□□□□□ -0.79
NUP54-215ENST00000514313 GPR62Q9BZJ7 368 aa10.12□□□□□ -0.79
NUP54-215ENST00000514313 TMEFF2Q9UIK5 374 aaPredicted RBP10.12□□□□□ -0.79
NUP54-215ENST00000514313 RNF112Q9ULX5 631 aa10.12□□□□□ -0.79
NUP54-215ENST00000514313 THRAP3Q9Y2W1 955 aaKnown RBP10.12□□□□□ -0.79
NUP54-215ENST00000514313 C2orf71A6NGG8 1288 aa10.11□□□□□ -0.79
NUP54-215ENST00000514313 FAM170BA6NMN3 283 aa10.11□□□□□ -0.79
NUP54-215ENST00000514313 GNAT3A8MTJ3 354 aa10.11□□□□□ -0.79
NUP54-215ENST00000514313 NPTXRO95502 500 aa10.11□□□□□ -0.79
NUP54-215ENST00000514313 CPEP16870 476 aa10.11□□□□□ -0.79
NUP54-215ENST00000514313 FLT3P36888 993 aa10.11□□□□□ -0.79
NUP54-215ENST00000514313 ZNF765Q7L2R6 523 aa10.11□□□□□ -0.79
NUP54-215ENST00000514313 MTDHQ86UE4 582 aaKnown RBP10.11□□□□□ -0.79
NUP54-215ENST00000514313 SLC12A9Q9BXP2 914 aa10.11□□□□□ -0.79
NUP54-215ENST00000514313 U3KQE9 123 aa10.11□□□□□ -0.79
NUP54-215ENST00000514313 ARNTLO00327 626 aa10.1□□□□□ -0.79
NUP54-215ENST00000514313 MEFVO15553 781 aaPredicted RBP10.1□□□□□ -0.79
NUP54-215ENST00000514313 BMP8BP34820 402 aa10.1□□□□□ -0.79
NUP54-215ENST00000514313 GUCY2FP51841 1108 aa10.1□□□□□ -0.79
NUP54-215ENST00000514313 GUCY1A3Q02108 690 aa10.1□□□□□ -0.79
NUP54-215ENST00000514313 DHCR24Q15392 516 aa10.1□□□□□ -0.79
NUP54-215ENST00000514313 CFAP100Q494V2 611 aa10.1□□□□□ -0.79
NUP54-215ENST00000514313 CYP27C1Q4G0S4 372 aa10.1□□□□□ -0.79
NUP54-215ENST00000514313 PIK3R6Q5UE93 754 aa10.1□□□□□ -0.79
NUP54-215ENST00000514313 CDCA2Q69YH5 1023 aaPredicted RBP10.1□□□□□ -0.79
NUP54-215ENST00000514313 ZCCHC8Q6NZY4 707 aaKnown RBP10.1□□□□□ -0.79
NUP54-215ENST00000514313 CCDC103Q8IW40 242 aa10.1□□□□□ -0.79
NUP54-215ENST00000514313 DUSP15Q9H1R2 295 aaPredicted RBP10.1□□□□□ -0.79
NUP54-215ENST00000514313 RAXQ9Y2V3 346 aa10.1□□□□□ -0.79
NUP54-215ENST00000514313 NPFFR2Q9Y5X5 522 aa10.1□□□□□ -0.79
NUP54-215ENST00000514313 WASHC2CQ9Y4E1 1318 aa10.09□□□□□ -0.79
NUP54-215ENST00000514313 FAM155AB1AL88 458 aaPredicted RBP10.09□□□□□ -0.79
NUP54-215ENST00000514313 GPR85P60893 370 aa10.09□□□□□ -0.79
NUP54-215ENST00000514313 ABHD17CQ6PCB6 329 aa10.09□□□□□ -0.79
NUP54-215ENST00000514313 FBXL6Q8N531 539 aa10.09□□□□□ -0.79
NUP54-215ENST00000514313 CLEC1BQ9P126 229 aa10.09□□□□□ -0.79
NUP54-215ENST00000514313 PCDHA8Q9Y5H6 950 aa10.09□□□□□ -0.79
NUP54-215ENST00000514313 B4E1Z4 1266 aa10.08□□□□□ -0.8
NUP54-215ENST00000514313 MSCO60682 206 aa10.08□□□□□ -0.8
NUP54-215ENST00000514313 PLS3P13797 630 aa10.08□□□□□ -0.8
NUP54-215ENST00000514313 VAV1P15498 845 aa10.08□□□□□ -0.8
NUP54-215ENST00000514313 KCNA6P17658 529 aa10.08□□□□□ -0.8
NUP54-215ENST00000514313 SEPHS1P49903 392 aa10.08□□□□□ -0.8
NUP54-215ENST00000514313 TESK1Q15569 626 aa10.08□□□□□ -0.8
NUP54-215ENST00000514313 SKOR2Q2VWA4 1001 aaPredicted RBP10.08□□□□□ -0.8
NUP54-215ENST00000514313 RSPO2Q6UXX9 243 aaPredicted RBP10.08□□□□□ -0.8
NUP54-215ENST00000514313 UBE2R2Q712K3 238 aaPredicted RBP10.08□□□□□ -0.8
NUP54-215ENST00000514313 KSR1Q8IVT5 923 aa10.08□□□□□ -0.8
NUP54-215ENST00000514313 IFNL3Q8IZI9 196 aa10.08□□□□□ -0.8
NUP54-215ENST00000514313 MFSD14AQ96MC6 490 aa10.08□□□□□ -0.8
NUP54-215ENST00000514313 ZFYVE21Q9BQ24 234 aa10.08□□□□□ -0.8
NUP54-215ENST00000514313 GPATCH2Q9NW75 528 aa10.08□□□□□ -0.8
NUP54-215ENST00000514313 KATNA1O75449 491 aa10.07□□□□□ -0.8
NUP54-215ENST00000514313 ZNF205O95201 554 aa10.07□□□□□ -0.8
NUP54-215ENST00000514313 LCP1P13796 627 aa10.07□□□□□ -0.8
NUP54-215ENST00000514313 LTBRP36941 435 aa10.07□□□□□ -0.8
NUP54-215ENST00000514313 NOP2P46087 812 aaKnown RBP10.07□□□□□ -0.8
NUP54-215ENST00000514313 STAT4Q14765 748 aa10.07□□□□□ -0.8
NUP54-215ENST00000514313 RTP2Q5QGT7 225 aa10.07□□□□□ -0.8
NUP54-215ENST00000514313 E4F1Q66K89 784 aaPredicted RBP10.07□□□□□ -0.8
NUP54-215ENST00000514313 RCSD1Q6JBY9 416 aa10.07□□□□□ -0.8
NUP54-215ENST00000514313 CD163Q86VB7 1156 aa10.07□□□□□ -0.8
NUP54-215ENST00000514313 RAVER1Q8IY67 606 aaKnown RBP10.07□□□□□ -0.8
NUP54-215ENST00000514313 WDR66Q8TBY9 1149 aa10.07□□□□□ -0.8
NUP54-215ENST00000514313 GPR27Q9NS67 375 aa10.07□□□□□ -0.8
NUP54-215ENST00000514313 SAMD15Q9P1V8 674 aa10.07□□□□□ -0.8
NUP54-215ENST00000514313 STOML1Q9UBI4 398 aa10.07□□□□□ -0.8
NUP54-215ENST00000514313 WASH4PA8MWX3 477 aa10.06□□□□□ -0.8
NUP54-215ENST00000514313 ARVCFO00192 962 aa10.06□□□□□ -0.8
NUP54-215ENST00000514313 GPR39O43194 453 aa10.06□□□□□ -0.8
NUP54-215ENST00000514313 GLRX3O76003 335 aaKnown RBP10.06□□□□□ -0.8
NUP54-215ENST00000514313 F13BP05160 661 aa10.06□□□□□ -0.8
NUP54-215ENST00000514313 GSTM1P09488 218 aa10.06□□□□□ -0.8
NUP54-215ENST00000514313 NAT1P18440 290 aa10.06□□□□□ -0.8
NUP54-215ENST00000514313 OXCT1P55809 520 aa10.06□□□□□ -0.8
NUP54-215ENST00000514313 KCNAB2Q13303 367 aa10.06□□□□□ -0.8
NUP54-215ENST00000514313 NKPD1Q17RQ9 610 aa10.06□□□□□ -0.8
NUP54-215ENST00000514313 CDKAL1Q5VV42 579 aa10.06□□□□□ -0.8
NUP54-215ENST00000514313 NECAB2Q7Z6G3 386 aa10.06□□□□□ -0.8
NUP54-215ENST00000514313 TSPYL5Q86VY4 417 aaPredicted RBP10.06□□□□□ -0.8
NUP54-215ENST00000514313 FAM181AQ8N9Y4 354 aa10.06□□□□□ -0.8
NUP54-215ENST00000514313 TRIT1Q9H3H1 467 aaKnown RBP10.06□□□□□ -0.8
NUP54-215ENST00000514313 PHLDB1Q86UU1 1377 aa10.05□□□□□ -0.8
NUP54-215ENST00000514313 ALDH1L1O75891 902 aa10.05□□□□□ -0.8
NUP54-215ENST00000514313 APPP05067 770 aa10.05□□□□□ -0.8
NUP54-215ENST00000514313 SYPP08247 313 aa10.05□□□□□ -0.8
NUP54-215ENST00000514313 CYP27A1Q02318 531 aa10.05□□□□□ -0.8
NUP54-215ENST00000514313 HSP90AB2PQ58FF8 381 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms