RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 MARCKSP29966 332 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 GNAQP50148 359 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 PIK3AP1Q6ZUJ8 805 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 PIAS4Q8N2W9 510 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 RGS22Q8NE09 1264 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 UBXN4Q92575 508 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 AGXT2Q9BYV1 514 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 RPAP3Q9H6T3 665 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 BRMS1Q9HCU9 246 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 DDX41Q9UJV9 622 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 CTNND1O60716 968 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 FGRP09769 529 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 SCG2P13521 617 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 PTPRAP18433 802 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 HOXA13P31271 388 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 STAT2P52630 851 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 HTRA3P83110 453 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 ZNF543Q08ER8 600 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 MCM6Q14566 821 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 GRM4Q14833 912 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 NOM1Q5C9Z4 860 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 TMCO3Q6UWJ1 677 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 NSMFQ6X4W1 530 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 SIAH1Q8IUQ4 282 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 ZNF280CQ8ND82 737 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 WASF1Q92558 559 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 SH2D4AQ9H788 454 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 RAVER2Q9HCJ3 691 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 RNF216Q9NWF9 866 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 AP5Z1O43299 807 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 FMNL1O95466 1100 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 CDC37Q16543 378 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 ZNF397Q8NF99 534 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 OPTNQ96CV9 577 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 GBA2Q9HCG7 927 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 PCDHA1Q9Y5I3 950 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 CEP350Q5VT06 3117 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 STK38Q15208 465 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 AS3MTQ9HBK9 375 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 NYAP2Q9P242 653 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 FEZ2Q9UHY8 353 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 WDR19Q8NEZ3 1342 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 ROBO3Q96MS0 1386 aa9.83□□□□□ -0.84
LIMCH1-209ENST00000509277 MYH8P13535 1937 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 ECM29Q5VYK3 1845 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 CCDC194A0A1B0GVG4 234 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 SMCO2A6NFE2 343 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 SMTNL1A8MU46 457 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 ME1P48163 572 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 ZNF157P51786 506 aaPredicted RBP9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 NTRK3Q16288 839 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 QRICH1Q2TAL8 776 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 SYDE2Q5VT97 1194 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 CNPY4Q8N129 248 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 L3MBTL3Q96JM7 780 aaPredicted RBP9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 LLPHQ9BRT6 129 aaKnown RBP9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 NUP62CLQ9H1M0 184 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 VCPKMTQ9H867 229 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 TMEM260Q9NX78 707 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 PKD2L1Q9P0L9 805 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 ATRNL1Q5VV63 1379 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 CNTNAP5Q8WYK1 1306 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 PHF20L1A8MW92 1017 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 USP17L15C9J2P7 530 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 USP17L13C9JLJ4 530 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 USP17L11C9JVI0 530 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 USP17L18D6R9N7 530 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 USP17L22D6RA61 530 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 USP17L17D6RBQ6 530 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 USP17L19D6RCP7 530 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 USP17L20D6RJB6 530 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 USP17L24Q0WX57 530 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 SPECC1Q5M775 1068 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 WWC2Q6AWC2 1192 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 USP17L6PQ6QN14 398 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 ANKRD13AQ8IZ07 590 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 RASSF8Q8NHQ8 419 aa9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 SMCR8Q8TEV9 937 aaPredicted RBP9.82□□□□□ -0.84
LIMCH1-209ENST00000509277 KIF28PB7ZC32 967 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 SORBS3O60504 671 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 ZNF165P49910 485 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 ZNF174Q15697 407 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 ASPRV1Q53RT3 343 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 CREBRFQ8IUR6 639 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 FBXO18Q8NFZ0 1043 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 SPATA32Q96LK8 384 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 DEF6Q9H4E7 631 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 DACT1Q9NYF0 836 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 VCAM1P19320 739 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 LDHDQ86WU2 507 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 ATG4CQ96DT6 458 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 AGBL1Q96MI9 1066 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 ALDH8A1Q9H2A2 487 aaPredicted RBP9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 JMJD4Q9H9V9 463 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 CCPG1Q9ULG6 757 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 PRR12Q9ULL5 1215 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 ATP6V1DQ9Y5K8 247 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 CENPFP49454 3210 aa9.81□□□□□ -0.84
LIMCH1-209ENST00000509277 CDK5RAP2Q96SN8 1893 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms