RNA–Protein interactions for RNA: ENST00000498808.5

HDAC6-236, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-236ENST00000498808 C11orf16Q9NQ32 467 aa18.71■□□□□ 0.59
HDAC6-236ENST00000498808 HOMER2Q9NSB8 354 aa18.71■□□□□ 0.59
HDAC6-236ENST00000498808 ARPP21Q9UBL0 812 aaPredicted RBP18.71■□□□□ 0.59
HDAC6-236ENST00000498808 DDX49Q9Y6V7 483 aaKnown RBP18.71■□□□□ 0.59
HDAC6-236ENST00000498808 IGKV6D-41A0A0C4DH26 115 aa18.7■□□□□ 0.58
HDAC6-236ENST00000498808 GTPBP6O43824 516 aaPredicted RBP18.7■□□□□ 0.58
HDAC6-236ENST00000498808 ARHGEF15O94989 841 aa18.7■□□□□ 0.58
HDAC6-236ENST00000498808 TMEM63BQ5T3F8 832 aa18.7■□□□□ 0.58
HDAC6-236ENST00000498808 STK11IPQ8N1F8 1099 aa18.7■□□□□ 0.58
HDAC6-236ENST00000498808 KIF1BPQ96EK5 621 aa18.7■□□□□ 0.58
HDAC6-236ENST00000498808 SEZ6LQ9BYH1 1024 aa18.7■□□□□ 0.58
HDAC6-236ENST00000498808 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.7■□□□□ 0.584e-7■■■■■ 29.1
HDAC6-236ENST00000498808 PUS7LQ9H0K6 701 aaKnown RBP18.7■□□□□ 0.58
HDAC6-236ENST00000498808 A1CFQ9NQ94 594 aaKnown RBP18.7■□□□□ 0.58
HDAC6-236ENST00000498808 CLIP2Q9UDT6 1046 aa18.7■□□□□ 0.58
HDAC6-236ENST00000498808 FEM1BQ9UK73 627 aa18.7■□□□□ 0.58
HDAC6-236ENST00000498808 COG5Q9UP83 839 aa18.7■□□□□ 0.58
HDAC6-236ENST00000498808 PIEZO1Q92508 2521 aa18.69■□□□□ 0.58
HDAC6-236ENST00000498808 DYNC1LI2O43237 492 aaPredicted RBP18.69■□□□□ 0.58
HDAC6-236ENST00000498808 AP5M1Q9H0R1 490 aa18.69■□□□□ 0.58
HDAC6-236ENST00000498808 BCL11AQ9H165 835 aa18.69■□□□□ 0.58
HDAC6-236ENST00000498808 ALDH8A1Q9H2A2 487 aaPredicted RBP18.69■□□□□ 0.58
HDAC6-236ENST00000498808 ACAD9Q9H845 621 aa18.69■□□□□ 0.58
HDAC6-236ENST00000498808 PDGFCQ9NRA1 345 aa18.69■□□□□ 0.58
HDAC6-236ENST00000498808 MUC6Q6W4X9 2439 aa18.69■□□□□ 0.58
HDAC6-236ENST00000498808 ZEB2O60315 1214 aa18.68■□□□□ 0.58
HDAC6-236ENST00000498808 PFKMP08237 780 aa18.68■□□□□ 0.58
HDAC6-236ENST00000498808 ATP5JP18859 108 aa18.68■□□□□ 0.58
HDAC6-236ENST00000498808 SBK1Q52WX2 424 aa18.68■□□□□ 0.58
HDAC6-236ENST00000498808 HAUS7Q99871 368 aa18.68■□□□□ 0.58
HDAC6-236ENST00000498808 MKNK2Q9HBH9 465 aa18.68■□□□□ 0.58
HDAC6-236ENST00000498808 BRWD1Q9NSI6 2320 aa18.68■□□□□ 0.58
HDAC6-236ENST00000498808 ASB14A6NK59 587 aa18.67■□□□□ 0.58
HDAC6-236ENST00000498808 GPR37L1O60883 481 aa18.67■□□□□ 0.58
HDAC6-236ENST00000498808 CYP2C9P11712 490 aa18.67■□□□□ 0.58
HDAC6-236ENST00000498808 TAP1Q03518 808 aa18.67■□□□□ 0.58
HDAC6-236ENST00000498808 TAPT1Q6NXT6 567 aa18.67■□□□□ 0.58
HDAC6-236ENST00000498808 DEFB128Q7Z7B8 93 aa18.67■□□□□ 0.58
HDAC6-236ENST00000498808 FBXO16Q8IX29 292 aaPredicted RBP18.67■□□□□ 0.58
HDAC6-236ENST00000498808 LRRC47Q8N1G4 583 aaKnown RBP18.67■□□□□ 0.58
HDAC6-236ENST00000498808 MKL1Q969V6 931 aa18.67■□□□□ 0.58
HDAC6-236ENST00000498808 CEP95Q96GE4 821 aa18.67■□□□□ 0.58
HDAC6-236ENST00000498808 RNF146Q9NTX7 359 aa18.67■□□□□ 0.58
HDAC6-236ENST00000498808 TRMT13Q9NUP7 481 aaKnown RBP18.67■□□□□ 0.58
HDAC6-236ENST00000498808 ZNF536O15090 1300 aa18.67■□□□□ 0.58
HDAC6-236ENST00000498808 LCTP09848 1927 aa18.66■□□□□ 0.58
HDAC6-236ENST00000498808 FAM86C2PA6NEL3 165 aa18.66■□□□□ 0.58
HDAC6-236ENST00000498808 EEPD1Q7L9B9 569 aa18.66■□□□□ 0.58
HDAC6-236ENST00000498808 SPRED2Q7Z698 418 aa18.66■□□□□ 0.58
HDAC6-236ENST00000498808 ARNTL2Q8WYA1 636 aa18.66■□□□□ 0.58
HDAC6-236ENST00000498808 HLA-CQ95604 372 aa18.66■□□□□ 0.58
HDAC6-236ENST00000498808 COG6Q9Y2V7 657 aa18.66■□□□□ 0.58
HDAC6-236ENST00000498808 Q9Y3F1 56 aa18.66■□□□□ 0.58
HDAC6-236ENST00000498808 COL4A4P53420 1690 aaPredicted RBP18.66■□□□□ 0.58
HDAC6-236ENST00000498808 GSG1L2A8MUP6 293 aa18.65■□□□□ 0.58
HDAC6-236ENST00000498808 MINDY4BA8MYZ0 360 aa18.65■□□□□ 0.58
HDAC6-236ENST00000498808 IQSEC1Q6DN90 963 aa18.65■□□□□ 0.58
HDAC6-236ENST00000498808 GMCL1P1Q8NEA9 526 aa18.65■□□□□ 0.58
HDAC6-236ENST00000498808 STRBPQ96SI9 672 aaKnown RBP18.65■□□□□ 0.58
HDAC6-236ENST00000498808 SLC9A7Q96T83 725 aa18.65■□□□□ 0.58
HDAC6-236ENST00000498808 CD320Q9NPF0 282 aa18.65■□□□□ 0.58
HDAC6-236ENST00000498808 MTMR4Q9NYA4 1195 aa18.65■□□□□ 0.58
HDAC6-236ENST00000498808 TNKSO95271 1327 aa18.65■□□□□ 0.58
HDAC6-236ENST00000498808 TET1Q8NFU7 2136 aa18.64■□□□□ 0.57
HDAC6-236ENST00000498808 TMEM232C9JQI7 657 aa18.64■□□□□ 0.57
HDAC6-236ENST00000498808 LPXNO60711 386 aa18.64■□□□□ 0.57
HDAC6-236ENST00000498808 PRDM1O75626 825 aa18.64■□□□□ 0.57
HDAC6-236ENST00000498808 FDX1P10109 184 aa18.64■□□□□ 0.57
HDAC6-236ENST00000498808 BMP3P12645 472 aa18.64■□□□□ 0.57
HDAC6-236ENST00000498808 GRB10Q13322 594 aa18.64■□□□□ 0.57
HDAC6-236ENST00000498808 SLFN13Q68D06 897 aa18.64■□□□□ 0.57
HDAC6-236ENST00000498808 RPAP2Q8IXW5 612 aaPredicted RBP18.64■□□□□ 0.57
HDAC6-236ENST00000498808 SYNPO2Q9UMS6 1093 aa18.64■□□□□ 0.57
HDAC6-236ENST00000498808 TANC1Q9C0D5 1861 aa18.64■□□□□ 0.57
HDAC6-236ENST00000498808 PTPRSQ13332 1948 aa18.64■□□□□ 0.57
HDAC6-236ENST00000498808 SUPT20HL2P0C7V6 817 aa18.63■□□□□ 0.57
HDAC6-236ENST00000498808 GIMAP6Q6P9H5 292 aa18.63■□□□□ 0.57
HDAC6-236ENST00000498808 HERC6Q8IVU3 1022 aa18.63■□□□□ 0.57
HDAC6-236ENST00000498808 SIRT2Q8IXJ6 389 aa18.63■□□□□ 0.57
HDAC6-236ENST00000498808 PHOSPHO2Q8TCD6 241 aa18.63■□□□□ 0.57
HDAC6-236ENST00000498808 PANK1Q8TE04 598 aa18.63■□□□□ 0.57
HDAC6-236ENST00000498808 TRERF1Q96PN7 1200 aa18.63■□□□□ 0.57
HDAC6-236ENST00000498808 EPB41L4AQ9HCS5 686 aaPredicted RBP18.63■□□□□ 0.57
HDAC6-236ENST00000498808 SCN10AQ9Y5Y9 1956 aa18.62■□□□□ 0.57
HDAC6-236ENST00000498808 PI4K2BG5E9Z4 385 aa18.62■□□□□ 0.57
HDAC6-236ENST00000498808 TTLL1O95922 423 aa18.62■□□□□ 0.57
HDAC6-236ENST00000498808 ACTN1P12814 892 aa18.62■□□□□ 0.57
HDAC6-236ENST00000498808 ALAS1P13196 640 aa18.62■□□□□ 0.57
HDAC6-236ENST00000498808 STAT2P52630 851 aa18.62■□□□□ 0.57
HDAC6-236ENST00000498808 PURAQ00577 322 aaKnown RBP18.62■□□□□ 0.57
HDAC6-236ENST00000498808 TKFCQ3LXA3 575 aa18.62■□□□□ 0.57
HDAC6-236ENST00000498808 MUM1L1Q5H9M0 696 aa18.62■□□□□ 0.57
HDAC6-236ENST00000498808 ZSCAN25Q6NSZ9 544 aa18.62■□□□□ 0.57
HDAC6-236ENST00000498808 KIAA1211Q6ZU35 1233 aa18.62■□□□□ 0.57
HDAC6-236ENST00000498808 PURBQ96QR8 312 aaKnown RBP18.62■□□□□ 0.57
HDAC6-236ENST00000498808 VTA1Q9NP79 307 aa18.62■□□□□ 0.57
HDAC6-236ENST00000498808 CYP39A1Q9NYL5 469 aa18.62■□□□□ 0.57
HDAC6-236ENST00000498808 PLIN4Q96Q06 1357 aa18.61■□□□□ 0.57
HDAC6-236ENST00000498808 RFC2P35250 354 aa18.61■□□□□ 0.57
HDAC6-236ENST00000498808 DUSP28Q4G0W2 176 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms