RNA–Protein interactions for RNA: ENST00000493957.5

UBA3-211, Transcript of ubiquitin like modifier activating enzyme 3, human

TSL 3

Gene UBA3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBA3-211	ENST00000493957	BIN2	Q9UBW5	565 aa	Predicted RBP	13.62	□□□□□ -0.23
UBA3-211	ENST00000493957	ALAS1	P13196	640 aa		13.61	□□□□□ -0.23
UBA3-211	ENST00000493957	ZKSCAN1	P17029	563 aa	Predicted RBP	13.61	□□□□□ -0.23
UBA3-211	ENST00000493957	OAZ1	P54368	228 aa		13.61	□□□□□ -0.23
UBA3-211	ENST00000493957	TROAP	Q12815	778 aa		13.61	□□□□□ -0.23
UBA3-211	ENST00000493957	GPATCH4	Q5T3I0	446 aa	Known RBP	13.61	□□□□□ -0.23
UBA3-211	ENST00000493957	NBPF11	Q86T75	865 aa		13.61	□□□□□ -0.23
UBA3-211	ENST00000493957	ADGRF4	Q8IZF3	695 aa		13.61	□□□□□ -0.23
UBA3-211	ENST00000493957	ZNF654	Q8IZM8	581 aa		13.61	□□□□□ -0.23
UBA3-211	ENST00000493957	PXYLP1	Q8TE99	480 aa		13.61	□□□□□ -0.23
UBA3-211	ENST00000493957	TMEM87B	Q96K49	555 aa		13.61	□□□□□ -0.23
UBA3-211	ENST00000493957	RNF146	Q9NTX7	359 aa		13.61	□□□□□ -0.23
UBA3-211	ENST00000493957	PALM3	A6NDB9	673 aa	Predicted RBP	13.6	□□□□□ -0.23
UBA3-211	ENST00000493957	KLRF2	D3W0D1	207 aa		13.6	□□□□□ -0.23
UBA3-211	ENST00000493957	HMGCR	P04035	888 aa		13.6	□□□□□ -0.23
UBA3-211	ENST00000493957	ICAM1	P05362	532 aa		13.6	□□□□□ -0.23
UBA3-211	ENST00000493957	HOXC6	P09630	235 aa		13.6	□□□□□ -0.23
UBA3-211	ENST00000493957	FCER1A	P12319	257 aa		13.6	□□□□□ -0.23
UBA3-211	ENST00000493957	XRCC5	P13010	732 aa	Known RBP	13.6	□□□□□ -0.23
UBA3-211	ENST00000493957	CCL5	P13501	91 aa		13.6	□□□□□ -0.23
UBA3-211	ENST00000493957	DHX32	Q7L7V1	743 aa	Known RBP	13.6	□□□□□ -0.23
UBA3-211	ENST00000493957	CCDC144CP	Q8IYA2	1237 aa		13.6	□□□□□ -0.23
UBA3-211	ENST00000493957	NUP133	Q8WUM0	1156 aa		13.6	□□□□□ -0.23
UBA3-211	ENST00000493957	VAT1L	Q9HCJ6	419 aa		13.6	□□□□□ -0.23
UBA3-211	ENST00000493957	BRPF3	Q9ULD4	1205 aa		13.6	□□□□□ -0.23
UBA3-211	ENST00000493957	CCPG1	Q9ULG6	757 aa		13.6	□□□□□ -0.23
UBA3-211	ENST00000493957	PCDHB8	Q9UN66	801 aa		13.6	□□□□□ -0.23
UBA3-211	ENST00000493957	GTF3C3	Q9Y5Q9	886 aa		13.6	□□□□□ -0.23
UBA3-211	ENST00000493957	ALPK3	Q96L96	1907 aa		13.6	□□□□□ -0.23
UBA3-211	ENST00000493957	CYTH3	O43739	400 aa		13.59	□□□□□ -0.23
UBA3-211	ENST00000493957	STRN	O43815	780 aa		13.59	□□□□□ -0.23
UBA3-211	ENST00000493957	IGHA2	P01877	340 aa		13.59	□□□□□ -0.23
UBA3-211	ENST00000493957	FDX1	P10109	184 aa		13.59	□□□□□ -0.23
UBA3-211	ENST00000493957	CYP2C19	P33261	490 aa		13.59	□□□□□ -0.23
UBA3-211	ENST00000493957	KRT32	Q14532	448 aa		13.59	□□□□□ -0.23
UBA3-211	ENST00000493957	KCTD2	Q14681	263 aa		13.59	□□□□□ -0.23
UBA3-211	ENST00000493957	CDC37	Q16543	378 aa	Predicted RBP	13.59	□□□□□ -0.23
UBA3-211	ENST00000493957	QRICH1	Q2TAL8	776 aa		13.59	□□□□□ -0.23
UBA3-211	ENST00000493957	C8orf34	Q49A92	452 aa		13.59	□□□□□ -0.23
UBA3-211	ENST00000493957	NFXL1	Q6ZNB6	911 aa		13.59	□□□□□ -0.23
UBA3-211	ENST00000493957	CATIP	Q7Z7H3	387 aa		13.59	□□□□□ -0.23
UBA3-211	ENST00000493957	DPP9	Q86TI2	863 aa		13.59	□□□□□ -0.23
UBA3-211	ENST00000493957	ABRA	Q8N0Z2	381 aa		13.59	□□□□□ -0.23
UBA3-211	ENST00000493957	FGD4	Q96M96	766 aa		13.59	□□□□□ -0.23
UBA3-211	ENST00000493957	TRERF1	Q96PN7	1200 aa		13.59	□□□□□ -0.23
UBA3-211	ENST00000493957	MTA3	Q9BTC8	594 aa		13.59	□□□□□ -0.23
UBA3-211	ENST00000493957	JMJD4	Q9H9V9	463 aa		13.59	□□□□□ -0.23
UBA3-211	ENST00000493957	A1CF	Q9NQ94	594 aa	Known RBP	13.59	□□□□□ -0.23
UBA3-211	ENST00000493957	DNAJC25-GNG10	A0A024R161	153 aa		13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	CCDC69	A6NI79	296 aa		13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	NFIB	O00712	420 aa		13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	DHX16	O60231	1041 aa	Known RBP	13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	PPP1R11	O60927	126 aa	Predicted RBP	13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	DDAH1	O94760	285 aa		13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	PLEKHA8P1	O95397	391 aa		13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	CAST	P20810	708 aa	Known RBP	13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	CCND3	P30281	292 aa	Predicted RBP	13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	COPB2	P35606	906 aa		13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	LIFR	P42702	1097 aa		13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	CNTN2	Q02246	1040 aa		13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	CACNB2	Q08289	660 aa	Predicted RBP	13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	ZNF792	Q3KQV3	632 aa		13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	USH1G	Q495M9	461 aa		13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	CMTR1	Q8N1G2	835 aa	Known RBP	13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	TRPV1	Q8NER1	839 aa		13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	CHST13	Q8NET6	341 aa		13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	CLEC4D	Q8WXI8	215 aa		13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	MAML3	Q96JK9	1138 aa		13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	PURB	Q96QR8	312 aa	Known RBP	13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	ACAD9	Q9H845	621 aa		13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	DDX49	Q9Y6V7	483 aa	Known RBP	13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	KIAA1217	Q5T5P2	1943 aa		13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	ASTN1	O14525	1302 aa		13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	WDR19	Q8NEZ3	1342 aa		13.58	□□□□□ -0.24
UBA3-211	ENST00000493957	EPB41L2	O43491	1005 aa	Known RBP	13.57	□□□□□ -0.24
UBA3-211	ENST00000493957	EN2	P19622	333 aa	Predicted RBP	13.57	□□□□□ -0.24
UBA3-211	ENST00000493957	RPS6KB1	P23443	525 aa		13.57	□□□□□ -0.24
UBA3-211	ENST00000493957	UBXN2A	P68543	259 aa		13.57	□□□□□ -0.24
UBA3-211	ENST00000493957	MAP3K21	Q5TCX8	1036 aa		13.57	□□□□□ -0.24
UBA3-211	ENST00000493957	APOA5	Q6Q788	366 aa		13.57	□□□□□ -0.24
UBA3-211	ENST00000493957	BLOC1S2	Q6QNY1	142 aa		13.57	□□□□□ -0.24
UBA3-211	ENST00000493957		Q6ZUG5	572 aa		13.57	□□□□□ -0.24
UBA3-211	ENST00000493957	SGMS1	Q86VZ5	419 aa		13.57	□□□□□ -0.24
UBA3-211	ENST00000493957	MICU3	Q86XE3	530 aa		13.57	□□□□□ -0.24
UBA3-211	ENST00000493957	PIBF1	Q8WXW3	757 aa		13.57	□□□□□ -0.24
UBA3-211	ENST00000493957	SHISA4	Q96DD7	197 aa		13.57	□□□□□ -0.24
UBA3-211	ENST00000493957	MTMR8	Q96EF0	704 aa		13.57	□□□□□ -0.24
UBA3-211	ENST00000493957	RNF208	Q9H0X6	261 aa		13.57	□□□□□ -0.24
UBA3-211	ENST00000493957	TNRC18	O15417	2968 aa	Predicted RBP	13.56	□□□□□ -0.24
UBA3-211	ENST00000493957	PDE4DIP	Q5VU43	2346 aa		13.56	□□□□□ -0.24
UBA3-211	ENST00000493957	APOBR	Q0VD83	1088 aa		13.56	□□□□□ -0.24
UBA3-211	ENST00000493957	TKFC	Q3LXA3	575 aa		13.56	□□□□□ -0.24
UBA3-211	ENST00000493957	PRAMEF19	Q5SWL8	479 aa		13.56	□□□□□ -0.24
UBA3-211	ENST00000493957	NSMF	Q6X4W1	530 aa		13.56	□□□□□ -0.24
UBA3-211	ENST00000493957	SLC30A10	Q6XR72	485 aa		13.56	□□□□□ -0.24
UBA3-211	ENST00000493957	HOMER1	Q86YM7	354 aa		13.56	□□□□□ -0.24
UBA3-211	ENST00000493957	ANKRD35	Q8N283	1001 aa		13.56	□□□□□ -0.24
UBA3-211	ENST00000493957	DDX11	Q96FC9	970 aa		13.56	□□□□□ -0.24
UBA3-211	ENST00000493957	PIGS	Q96S52	555 aa		13.56	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms