RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 GINS2Q9Y248 185 aa12.21□□□□□ -0.45
HDAC6-228ENST00000486227 TAF6LQ9Y6J9 622 aa12.21□□□□□ -0.45
HDAC6-228ENST00000486227 CALUO43852 315 aaPredicted RBP12.21□□□□□ -0.46
HDAC6-228ENST00000486227 EZRP15311 586 aaKnown RBP12.21□□□□□ -0.46
HDAC6-228ENST00000486227 CDC27P30260 824 aa12.21□□□□□ -0.46
HDAC6-228ENST00000486227 ENAHQ8N8S7 591 aaPredicted RBP12.21□□□□□ -0.46
HDAC6-228ENST00000486227 TBCKQ8TEA7 893 aa12.21□□□□□ -0.46
HDAC6-228ENST00000486227 RABGGTAQ92696 567 aa12.21□□□□□ -0.46
HDAC6-228ENST00000486227 NUP58Q9BVL2 599 aa12.21□□□□□ -0.46
HDAC6-228ENST00000486227 SLC39A2Q9NP94 309 aa12.21□□□□□ -0.46
HDAC6-228ENST00000486227 MEGF6O75095 1541 aa12.21□□□□□ -0.46
HDAC6-228ENST00000486227 TMEM110-MUSTN1A8MSY1 372 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 SPATA1Q5VX52 437 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 SMYD4Q8IYR2 804 aaPredicted RBP12.2□□□□□ -0.46
HDAC6-228ENST00000486227 LMBR1Q8WVP7 490 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 SPON1Q9HCB6 807 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 ARMC9Q7Z3E5 817 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 LINC00116Q8NCU8 138 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 STK24Q9Y6E0 443 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 ABCC12Q96J65 1359 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 GCOM1H8Y6P7 765 aaPredicted RBP12.2□□□□□ -0.46
HDAC6-228ENST00000486227 POLR2MP0CAP2 368 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 GBP2P32456 591 aaPredicted RBP12.2□□□□□ -0.46
HDAC6-228ENST00000486227 CLCN6P51797 869 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 HNRNPH2P55795 449 aaKnown RBP12.2□□□□□ -0.46
HDAC6-228ENST00000486227 CYP4A11Q02928 519 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 TMTC3Q6ZXV5 915 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 IFT74Q96LB3 600 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 CPVLQ9H3G5 476 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 EFCC1Q9HA90 598 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 NLRC4Q9NPP4 1024 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 MRPL11Q9Y3B7 192 aaKnown RBP12.2□□□□□ -0.46
HDAC6-228ENST00000486227 GOLGA6L10A0A0M3HER8 536 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 INPP5BP32019 993 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 GNPTABQ3T906 1256 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 CCDC84Q86UT8 332 aaPredicted RBP12.2□□□□□ -0.46
HDAC6-228ENST00000486227 ARFGAP2Q8N6H7 521 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 ANKRD7Q92527 254 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 EPSTI1Q96J88 318 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 GSDMAQ96QA5 445 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 PHLPP2Q6ZVD8 1323 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 KDM3AQ9Y4C1 1321 aa12.2□□□□□ -0.46
HDAC6-228ENST00000486227 EXOC3O60645 756 aa12.19□□□□□ -0.46
HDAC6-228ENST00000486227 FLOT1O75955 427 aa12.19□□□□□ -0.46
HDAC6-228ENST00000486227 SLFN14P0C7P3 912 aa12.19□□□□□ -0.46
HDAC6-228ENST00000486227 EXOSC10Q01780 885 aaKnown RBP12.19□□□□□ -0.46
HDAC6-228ENST00000486227 BIRC3Q13489 604 aa12.19□□□□□ -0.46
HDAC6-228ENST00000486227 MYOCDQ8IZQ8 938 aa12.19□□□□□ -0.46
HDAC6-228ENST00000486227 PLVAPQ9BX97 442 aa12.19□□□□□ -0.46
HDAC6-228ENST00000486227 PI4KBQ9UBF8 816 aa12.19□□□□□ -0.46
HDAC6-228ENST00000486227 DHX36Q9H2U1 1008 aaKnown RBP12.19□□□□□ -0.46
HDAC6-228ENST00000486227 PCDHB13Q9Y5F0 798 aa12.19□□□□□ -0.46
HDAC6-228ENST00000486227 PNMA6AP0CW24 399 aaPredicted RBP12.19□□□□□ -0.46
HDAC6-228ENST00000486227 GJC1P36383 396 aa12.19□□□□□ -0.46
HDAC6-228ENST00000486227 MAGEA1P43355 309 aa12.19□□□□□ -0.46
HDAC6-228ENST00000486227 MAP2K1Q02750 393 aaPredicted RBP12.19□□□□□ -0.46
HDAC6-228ENST00000486227 SF3B3Q15393 1217 aaKnown RBP12.19□□□□□ -0.46
HDAC6-228ENST00000486227 PTPN21Q16825 1174 aa12.19□□□□□ -0.46
HDAC6-228ENST00000486227 GRIPAP1Q4V328 841 aa12.19□□□□□ -0.46
HDAC6-228ENST00000486227 CCDC121Q6ZUS5 278 aa12.19□□□□□ -0.46
HDAC6-228ENST00000486227 NLRX1Q86UT6 975 aa12.19□□□□□ -0.46
HDAC6-228ENST00000486227 DHX37Q8IY37 1157 aaKnown RBP12.19□□□□□ -0.46
HDAC6-228ENST00000486227 DESI2Q9BSY9 194 aa12.19□□□□□ -0.46
HDAC6-228ENST00000486227 PPP2R2CQ9Y2T4 447 aa12.19□□□□□ -0.46
HDAC6-228ENST00000486227 SRPRBQ9Y5M8 271 aaKnown RBP12.19□□□□□ -0.46
HDAC6-228ENST00000486227 TESPA1A2RU30 521 aaPredicted RBP12.19□□□□□ -0.46
HDAC6-228ENST00000486227 TAF12Q16514 161 aa12.19□□□□□ -0.46
HDAC6-228ENST00000486227 ANKRD35Q8N283 1001 aa12.19□□□□□ -0.46
HDAC6-228ENST00000486227 RDH13Q8NBN7 331 aa12.19□□□□□ -0.46
HDAC6-228ENST00000486227 DYDC1Q8WWB3 177 aa12.19□□□□□ -0.46
HDAC6-228ENST00000486227 JAKMIP2Q96AA8 810 aa12.19□□□□□ -0.46
HDAC6-228ENST00000486227 FNBP1Q96RU3 617 aa12.19□□□□□ -0.46
HDAC6-228ENST00000486227 MYCBPQ99417 103 aaPredicted RBP12.19□□□□□ -0.46
HDAC6-228ENST00000486227 ALDH8A1Q9H2A2 487 aaPredicted RBP12.19□□□□□ -0.46
HDAC6-228ENST00000486227 CCNA1P78396 465 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 GPSM2P81274 684 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 SARM1Q6SZW1 724 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 PLA2G4DQ86XP0 818 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 EXOC4Q96A65 974 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 TMEM47Q9BQJ4 181 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 RRP15Q9Y3B9 282 aaKnown RBP12.18□□□□□ -0.46
HDAC6-228ENST00000486227 WDR19Q8NEZ3 1342 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 MST1RQ04912 1400 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 GOLGA6CA6NDK9 693 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 NTSR2O95665 410 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 GOLGA6DP0CG33 693 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 VAV2P52735 878 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 SLC9C1Q4G0N8 1177 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 MCTP2Q6DN12 878 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 RRAGAQ7L523 313 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 MIER3Q7Z3K6 550 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 GOLGA6AQ9NYA3 693 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 ACTN2P35609 894 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 DNM2P50570 870 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 VWA3BQ502W6 1294 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 SLFN12Q8IYM2 578 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 OR8K1Q8NGG5 319 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 FERMT1Q9BQL6 677 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 KIAA1024Q9UPX6 916 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 SPATA31A5Q5VU36 1347 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms