RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 NSMFQ6X4W1 530 aa22.08■■□□□ 1.13
PTCD3-210ENST00000473829 ZNF654Q8IZM8 581 aa22.08■■□□□ 1.13
PTCD3-210ENST00000473829 PURBQ96QR8 312 aaKnown RBP22.08■■□□□ 1.13
PTCD3-210ENST00000473829 VAT1LQ9HCJ6 419 aa22.08■■□□□ 1.13
PTCD3-210ENST00000473829 DDX20Q9UHI6 824 aaKnown RBP22.08■■□□□ 1.13
PTCD3-210ENST00000473829 PFASO15067 1338 aa22.07■■□□□ 1.12
PTCD3-210ENST00000473829 BAZ2BQ9UIF8 2168 aaKnown RBP22.07■■□□□ 1.12
PTCD3-210ENST00000473829 POTEB2H3BUK9 544 aa22.07■■□□□ 1.12
PTCD3-210ENST00000473829 DHX16O60231 1041 aaKnown RBP22.07■■□□□ 1.12
PTCD3-210ENST00000473829 REC8O95072 547 aa22.07■■□□□ 1.12
PTCD3-210ENST00000473829 SNAI1O95863 264 aaPredicted RBP22.07■■□□□ 1.12
PTCD3-210ENST00000473829 MAMDC4Q6UXC1 1216 aa22.07■■□□□ 1.12
PTCD3-210ENST00000473829 CATIPQ7Z7H3 387 aa22.07■■□□□ 1.12
PTCD3-210ENST00000473829 ZNF467Q7Z7K2 595 aaPredicted RBP22.07■■□□□ 1.12
PTCD3-210ENST00000473829 SNX14Q9Y5W7 946 aa22.07■■□□□ 1.12
PTCD3-210ENST00000473829 DDX49Q9Y6V7 483 aaKnown RBP22.07■■□□□ 1.12
PTCD3-210ENST00000473829 DDAH1O94760 285 aa22.06■■□□□ 1.12
PTCD3-210ENST00000473829 EXOSC10Q01780 885 aaKnown RBP22.06■■□□□ 1.12
PTCD3-210ENST00000473829 ANO1Q5XXA6 986 aa22.06■■□□□ 1.12
PTCD3-210ENST00000473829 SLC30A10Q6XR72 485 aa22.06■■□□□ 1.12
PTCD3-210ENST00000473829 NUP133Q8WUM0 1156 aa22.06■■□□□ 1.12
PTCD3-210ENST00000473829 MTMR8Q96EF0 704 aa22.06■■□□□ 1.12
PTCD3-210ENST00000473829 ALPK3Q96L96 1907 aa22.06■■□□□ 1.12
PTCD3-210ENST00000473829 SYNGAP1Q96PV0 1343 aa22.06■■□□□ 1.12
PTCD3-210ENST00000473829 SEPT4O43236 478 aa22.05■■□□□ 1.12
PTCD3-210ENST00000473829 CYTH3O43739 400 aa22.05■■□□□ 1.12
PTCD3-210ENST00000473829 PPP1R11O60927 126 aaPredicted RBP22.05■■□□□ 1.12
PTCD3-210ENST00000473829 ZNF865P0CJ78 1059 aaPredicted RBP22.05■■□□□ 1.12
PTCD3-210ENST00000473829 CPA1P15085 419 aa22.05■■□□□ 1.12
PTCD3-210ENST00000473829 RXRAP19793 462 aa22.05■■□□□ 1.12
PTCD3-210ENST00000473829 LIFRP42702 1097 aa22.05■■□□□ 1.12
PTCD3-210ENST00000473829 BAATQ14032 418 aaPredicted RBP22.05■■□□□ 1.12
PTCD3-210ENST00000473829 KRT32Q14532 448 aa22.05■■□□□ 1.12
PTCD3-210ENST00000473829 NFXL1Q6ZNB6 911 aa22.05■■□□□ 1.12
PTCD3-210ENST00000473829 RAB11FIP4Q86YS3 637 aa22.05■■□□□ 1.12
PTCD3-210ENST00000473829 MSL3Q8N5Y2 521 aaKnown RBP22.05■■□□□ 1.12
PTCD3-210ENST00000473829 ARMCX2Q7L311 632 aa22.04■■□□□ 1.12
PTCD3-210ENST00000473829 DHX32Q7L7V1 743 aaKnown RBP22.04■■□□□ 1.12
PTCD3-210ENST00000473829 ANKLE1Q8NAG6 615 aa22.04■■□□□ 1.12
PTCD3-210ENST00000473829 PAWRQ96IZ0 340 aaKnown RBP22.04■■□□□ 1.12
PTCD3-210ENST00000473829 RIOX1Q9H6W3 641 aa22.04■■□□□ 1.12
PTCD3-210ENST00000473829 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.04■■□□□ 1.12
PTCD3-210ENST00000473829 NRBP1Q9UHY1 535 aa22.04■■□□□ 1.12
PTCD3-210ENST00000473829 PNMA2Q9UL42 364 aa22.04■■□□□ 1.12
PTCD3-210ENST00000473829 PTPDC1A2A3K4 754 aa22.03■■□□□ 1.12
PTCD3-210ENST00000473829 CCDC69A6NI79 296 aa22.03■■□□□ 1.12
PTCD3-210ENST00000473829 CAPN2P17655 700 aa22.03■■□□□ 1.12
PTCD3-210ENST00000473829 SGMS1Q86VZ5 419 aa22.03■■□□□ 1.12
PTCD3-210ENST00000473829 FBXO11Q86XK2 927 aa22.03■■□□□ 1.12
PTCD3-210ENST00000473829 CCDC144CPQ8IYA2 1237 aa22.03■■□□□ 1.12
PTCD3-210ENST00000473829 TMTC2Q8N394 836 aa22.03■■□□□ 1.12
PTCD3-210ENST00000473829 LENG1Q96BZ8 264 aaPredicted RBP22.03■■□□□ 1.12
PTCD3-210ENST00000473829 JAKMIP1Q96N16 626 aaKnown RBP22.03■■□□□ 1.12
PTCD3-210ENST00000473829 MAP3K14Q99558 947 aa22.03■■□□□ 1.12
PTCD3-210ENST00000473829 KATNBL1Q9H079 304 aa22.03■■□□□ 1.12
PTCD3-210ENST00000473829 ABCB11O95342 1321 aa22.03■■□□□ 1.12
PTCD3-210ENST00000473829 ZBTB5O15062 677 aa22.02■■□□□ 1.12
PTCD3-210ENST00000473829 MSCO60682 206 aa22.02■■□□□ 1.12
PTCD3-210ENST00000473829 RNF207Q6ZRF8 634 aa22.02■■□□□ 1.12
PTCD3-210ENST00000473829 HOMER1Q86YM7 354 aa22.02■■□□□ 1.12
PTCD3-210ENST00000473829 PIGSQ96S52 555 aa22.02■■□□□ 1.12
PTCD3-210ENST00000473829 USP26Q9BXU7 913 aa22.02■■□□□ 1.12
PTCD3-210ENST00000473829 CNPY2Q9Y2B0 182 aa22.02■■□□□ 1.12
PTCD3-210ENST00000473829 OPLAHO14841 1288 aa22.01■■□□□ 1.11
PTCD3-210ENST00000473829 PLEKHA8P1O95397 391 aa22.01■■□□□ 1.11
PTCD3-210ENST00000473829 CALML3P27482 149 aa22.01■■□□□ 1.11
PTCD3-210ENST00000473829 RPS6P62753 249 aaKnown RBP22.01■■□□□ 1.11
PTCD3-210ENST00000473829 CTCFLQ8NI51 663 aaPredicted RBP22.01■■□□□ 1.11
PTCD3-210ENST00000473829 TBC1D5Q92609 795 aa22.01■■□□□ 1.11
PTCD3-210ENST00000473829 ZHX1Q9UKY1 873 aaPredicted RBP22.01■■□□□ 1.11
PTCD3-210ENST00000473829 SLC12A7Q9Y666 1083 aa22.01■■□□□ 1.11
PTCD3-210ENST00000473829 ADCY6O43306 1168 aa22■■□□□ 1.11
PTCD3-210ENST00000473829 EPB41L2O43491 1005 aaKnown RBP22■■□□□ 1.11
PTCD3-210ENST00000473829 ACVR2BQ13705 512 aa22■■□□□ 1.11
PTCD3-210ENST00000473829 APOA5Q6Q788 366 aa22■■□□□ 1.11
PTCD3-210ENST00000473829 MICU3Q86XE3 530 aa22■■□□□ 1.11
PTCD3-210ENST00000473829 AMNQ9BXJ7 453 aa22■■□□□ 1.11
PTCD3-210ENST00000473829 BRPF3Q9ULD4 1205 aa22■■□□□ 1.11
PTCD3-210ENST00000473829 HMGB1P09429 215 aaKnown RBP21.99■■□□□ 1.11
PTCD3-210ENST00000473829 COL6A1P12109 1028 aa21.99■■□□□ 1.11
PTCD3-210ENST00000473829 AKR1A1P14550 325 aa21.99■■□□□ 1.11
PTCD3-210ENST00000473829 KIF5BP33176 963 aa21.99■■□□□ 1.11
PTCD3-210ENST00000473829 ALDH5A1P51649 535 aaPredicted RBP21.99■■□□□ 1.11
PTCD3-210ENST00000473829 NECAB2Q7Z6G3 386 aa21.99■■□□□ 1.11
PTCD3-210ENST00000473829 CMTR1Q8N1G2 835 aaKnown RBP21.99■■□□□ 1.11
PTCD3-210ENST00000473829 SRBD1Q8N5C6 995 aaKnown RBP21.99■■□□□ 1.11
PTCD3-210ENST00000473829 PIBF1Q8WXW3 757 aa21.99■■□□□ 1.11
PTCD3-210ENST00000473829 SPZ1Q9BXG8 430 aa21.99■■□□□ 1.11
PTCD3-210ENST00000473829 ABHD16BQ9H3Z7 469 aa21.99■■□□□ 1.11
PTCD3-210ENST00000473829 ASB14A6NK59 587 aa21.98■■□□□ 1.11
PTCD3-210ENST00000473829 RGS22Q8NE09 1264 aa21.98■■□□□ 1.11
PTCD3-210ENST00000473829 MORC4Q8TE76 937 aa21.98■■□□□ 1.11
PTCD3-210ENST00000473829 C11orf49Q9H6J7 331 aa21.98■■□□□ 1.11
PTCD3-210ENST00000473829 COL20A1Q9P218 1284 aa21.98■■□□□ 1.11
PTCD3-210ENST00000473829 MRPL11Q9Y3B7 192 aaKnown RBP21.98■■□□□ 1.11
PTCD3-210ENST00000473829 DNAH12Q6ZR08 3092 aa21.98■■□□□ 1.11
PTCD3-210ENST00000473829 CALM1P0DP23 149 aa21.97■■□□□ 1.11
PTCD3-210ENST00000473829 CALM2P0DP24 149 aa21.97■■□□□ 1.11
PTCD3-210ENST00000473829 CALM3P0DP25 149 aa21.97■■□□□ 1.11
PTCD3-210ENST00000473829 CCDC144BQ3MJ40 725 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms