RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 RFX7Q2KHR2 1363 aa6.63□□□□□ -1.35
VPS41-211ENST00000466017 FBXO33Q7Z6M2 555 aa6.63□□□□□ -1.35
VPS41-211ENST00000466017 RPGRQ92834 1020 aaKnown RBP6.63□□□□□ -1.35
VPS41-211ENST00000466017 NEUROD6Q96NK8 337 aa6.63□□□□□ -1.35
VPS41-211ENST00000466017 ZNF804BA4D1E1 1349 aa6.62□□□□□ -1.35
VPS41-211ENST00000466017 PDS5AQ29RF7 1337 aaKnown RBP6.62□□□□□ -1.35
VPS41-211ENST00000466017 IRS2Q9Y4H2 1338 aa6.62□□□□□ -1.35
VPS41-211ENST00000466017 H0YIN7 160 aa6.62□□□□□ -1.35
VPS41-211ENST00000466017 PHACTR2O75167 634 aa6.62□□□□□ -1.35
VPS41-211ENST00000466017 GATA4P43694 442 aa6.62□□□□□ -1.35
VPS41-211ENST00000466017 LRRFIP1Q32MZ4 808 aaKnown RBP6.62□□□□□ -1.35
VPS41-211ENST00000466017 CASC1Q6TDU7 716 aa6.62□□□□□ -1.35
VPS41-211ENST00000466017 NXPE3Q969Y0 559 aa6.62□□□□□ -1.35
VPS41-211ENST00000466017 LENG1Q96BZ8 264 aaPredicted RBP6.62□□□□□ -1.35
VPS41-211ENST00000466017 OSMRQ99650 979 aa6.62□□□□□ -1.35
VPS41-211ENST00000466017 VPS33BQ9H267 617 aa6.62□□□□□ -1.35
VPS41-211ENST00000466017 BOLA2Q9H3K6 86 aa6.62□□□□□ -1.35
VPS41-211ENST00000466017 MTMR7Q9Y216 660 aa6.62□□□□□ -1.35
VPS41-211ENST00000466017 ATP6V0A2Q9Y487 856 aa6.62□□□□□ -1.35
VPS41-211ENST00000466017 XDHP47989 1333 aa6.61□□□□□ -1.35
VPS41-211ENST00000466017 ADAM11O75078 769 aa6.61□□□□□ -1.35
VPS41-211ENST00000466017 BRD1O95696 1058 aa6.61□□□□□ -1.35
VPS41-211ENST00000466017 ZFYP08048 801 aaPredicted RBP6.61□□□□□ -1.35
VPS41-211ENST00000466017 PCSK2P16519 638 aa6.61□□□□□ -1.35
VPS41-211ENST00000466017 CHMLP26374 656 aa6.61□□□□□ -1.35
VPS41-211ENST00000466017 POLD1P28340 1107 aa6.61□□□□□ -1.35
VPS41-211ENST00000466017 NOS3P29474 1203 aa6.61□□□□□ -1.35
VPS41-211ENST00000466017 TTF1Q15361 905 aaPredicted RBP6.61□□□□□ -1.35
VPS41-211ENST00000466017 FOXD4L6Q3SYB3 417 aaPredicted RBP6.61□□□□□ -1.35
VPS41-211ENST00000466017 CAVIN4Q5BKX8 364 aa6.61□□□□□ -1.35
VPS41-211ENST00000466017 FOXD4L3Q6VB84 417 aaPredicted RBP6.61□□□□□ -1.35
VPS41-211ENST00000466017 AGGF1Q8N302 714 aaeCLIP6.61□□□□□ -1.35
VPS41-211ENST00000466017 KBTBD3Q8NAB2 608 aa6.61□□□□□ -1.35
VPS41-211ENST00000466017 RUFY2Q8WXA3 655 aa6.61□□□□□ -1.35
VPS41-211ENST00000466017 FAM129BQ96TA1 746 aa6.61□□□□□ -1.35
VPS41-211ENST00000466017 RTFDC1Q9BY42 306 aaPredicted RBP6.61□□□□□ -1.35
VPS41-211ENST00000466017 NIF3L1Q9GZT8 377 aa6.61□□□□□ -1.35
VPS41-211ENST00000466017 GNL3LQ9NVN8 582 aaKnown RBP6.61□□□□□ -1.35
VPS41-211ENST00000466017 BRPF3Q9ULD4 1205 aa6.61□□□□□ -1.35
VPS41-211ENST00000466017 GNEQ9Y223 722 aaKnown RBP6.61□□□□□ -1.35
VPS41-211ENST00000466017 CD2APQ9Y5K6 639 aa6.61□□□□□ -1.35
VPS41-211ENST00000466017 C10orf71Q711Q0 1435 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 ANKRD31Q8N7Z5 1873 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 SPEF2Q9C093 1822 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 RAD50Q92878 1312 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 SPDYE3A6NKU9 549 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 PDE2AO00408 941 aaPredicted RBP6.6□□□□□ -1.35
VPS41-211ENST00000466017 ADAM23O75077 832 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 TAF5LO75529 589 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 CDC27P30260 824 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 ADORA1P30542 326 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 IREB2P48200 963 aaKnown RBP6.6□□□□□ -1.35
VPS41-211ENST00000466017 RBM25P49756 843 aaKnown RBP6.6□□□□□ -1.35
VPS41-211ENST00000466017 RAC1P63000 192 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 RSPO4Q2I0M5 234 aaPredicted RBP6.6□□□□□ -1.35
VPS41-211ENST00000466017 NKAPLQ5M9Q1 402 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 TTC39AQ5SRH9 613 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 GORABQ5T7V8 394 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 ZSCAN25Q6NSZ9 544 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 C2CD5Q86YS7 1000 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 RILPL2Q969X0 211 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 IL17RAQ96F46 866 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 KLHDC7BQ96G42 594 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 FAM84BQ96KN1 310 aaPredicted RBP6.6□□□□□ -1.35
VPS41-211ENST00000466017 SPACA7Q96KW9 195 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 SSBP4Q9BWG4 385 aaPredicted RBP6.6□□□□□ -1.35
VPS41-211ENST00000466017 ADAM19Q9H013 955 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 TMX4Q9H1E5 349 aaPredicted RBP6.6□□□□□ -1.35
VPS41-211ENST00000466017 DENND2AQ9ULE3 1009 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 PPME1Q9Y570 386 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 IVNS1ABPQ9Y6Y0 642 aa6.6□□□□□ -1.35
VPS41-211ENST00000466017 CASZ1Q86V15 1759 aa6.59□□□□□ -1.35
VPS41-211ENST00000466017 EP400Q96L91 3159 aa6.59□□□□□ -1.35
VPS41-211ENST00000466017 TNRC6CQ9HCJ0 1690 aaKnown RBP6.59□□□□□ -1.35
VPS41-211ENST00000466017 SGSM2O43147 1006 aa6.59□□□□□ -1.35
VPS41-211ENST00000466017 SMNDC1O75940 238 aaKnown RBP eCLIP6.59□□□□□ -1.35
VPS41-211ENST00000466017 REC8O95072 547 aa6.59□□□□□ -1.35
VPS41-211ENST00000466017 RPLP1P05386 114 aaKnown RBP6.59□□□□□ -1.35
VPS41-211ENST00000466017 IL1R1P14778 569 aa6.59□□□□□ -1.35
VPS41-211ENST00000466017 KCNA3P22001 575 aa6.59□□□□□ -1.35
VPS41-211ENST00000466017 HIBADHP31937 336 aaKnown RBP6.59□□□□□ -1.35
VPS41-211ENST00000466017 MCAMP43121 646 aa6.59□□□□□ -1.35
VPS41-211ENST00000466017 PHKA1P46020 1223 aa6.59□□□□□ -1.35
VPS41-211ENST00000466017 GPSM2P81274 684 aa6.59□□□□□ -1.35
VPS41-211ENST00000466017 UBE3CQ15386 1083 aa6.59□□□□□ -1.35
VPS41-211ENST00000466017 SPRED3Q2MJR0 410 aa6.59□□□□□ -1.35
VPS41-211ENST00000466017 TSHZ3Q63HK5 1081 aa6.59□□□□□ -1.35
VPS41-211ENST00000466017 VN1R5Q7Z5H4 357 aa6.59□□□□□ -1.35
VPS41-211ENST00000466017 SUPT20HQ8NEM7 779 aa6.59□□□□□ -1.35
VPS41-211ENST00000466017 TDRD7Q8NHU6 1098 aaKnown RBP6.59□□□□□ -1.35
VPS41-211ENST00000466017 SNX29Q8TEQ0 813 aa6.59□□□□□ -1.35
VPS41-211ENST00000466017 WFDC12Q8WWY7 111 aa6.59□□□□□ -1.35
VPS41-211ENST00000466017 MEGF10Q96KG7 1140 aa6.59□□□□□ -1.35
VPS41-211ENST00000466017 USP26Q9BXU7 913 aa6.59□□□□□ -1.35
VPS41-211ENST00000466017 PDGFDQ9GZP0 370 aaPredicted RBP6.59□□□□□ -1.35
VPS41-211ENST00000466017 MUC3BQ9H195 1237 aa6.59□□□□□ -1.35
VPS41-211ENST00000466017 RBSNQ9H1K0 784 aa6.59□□□□□ -1.35
VPS41-211ENST00000466017 UPF2Q9HAU5 1272 aaKnown RBP6.59□□□□□ -1.35
VPS41-211ENST00000466017 HELLSQ9NRZ9 838 aa6.59□□□□□ -1.35
VPS41-211ENST00000466017 PAG1Q9NWQ8 432 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms