RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 ZNF200P98182 395 aaPredicted RBP6.36□□□□□ -1.39
VPS29-202ENST00000447578 NFKB2Q00653 900 aa6.36□□□□□ -1.39
VPS29-202ENST00000447578 TMEM62Q0P6H9 643 aa6.36□□□□□ -1.39
VPS29-202ENST00000447578 INTS3Q68E01 1043 aaKnown RBP6.36□□□□□ -1.39
VPS29-202ENST00000447578 DHRS1Q96LJ7 313 aa6.36□□□□□ -1.39
VPS29-202ENST00000447578 PRR13Q9NZ81 148 aa6.36□□□□□ -1.39
VPS29-202ENST00000447578 TP53P04637 393 aaPredicted RBP6.35□□□□□ -1.39
VPS29-202ENST00000447578 ZNF445P59923 1031 aa6.35□□□□□ -1.39
VPS29-202ENST00000447578 ZYXQ15942 572 aaKnown RBP6.35□□□□□ -1.39
VPS29-202ENST00000447578 AXDND1Q5T1B0 1012 aaPredicted RBP6.35□□□□□ -1.39
VPS29-202ENST00000447578 CWF19L1Q69YN2 538 aaKnown RBP6.35□□□□□ -1.39
VPS29-202ENST00000447578 ZC3H14Q6PJT7 736 aaKnown RBP6.35□□□□□ -1.39
VPS29-202ENST00000447578 LINC01356Q8N9X3 169 aa6.35□□□□□ -1.39
VPS29-202ENST00000447578 TMEM87AQ8NBN3 555 aa6.35□□□□□ -1.39
VPS29-202ENST00000447578 ZNRF3Q9ULT6 936 aa6.35□□□□□ -1.39
VPS29-202ENST00000447578 IRS2Q9Y4H2 1338 aa6.34□□□□□ -1.39
VPS29-202ENST00000447578 FFAR3O14843 346 aa6.34□□□□□ -1.39
VPS29-202ENST00000447578 IGFBP6P24592 240 aaPredicted RBP6.34□□□□□ -1.39
VPS29-202ENST00000447578 MAPKAPK2P49137 400 aa6.34□□□□□ -1.39
VPS29-202ENST00000447578 PMS1P54277 932 aaKnown RBP6.34□□□□□ -1.39
VPS29-202ENST00000447578 NOL9Q5SY16 702 aaKnown RBP6.34□□□□□ -1.39
VPS29-202ENST00000447578 HLA-DQA1Q5Y7H0 255 aa6.34□□□□□ -1.39
VPS29-202ENST00000447578 RUFY4Q6ZNE9 571 aa6.34□□□□□ -1.39
VPS29-202ENST00000447578 JAMLQ86YT9 394 aa6.34□□□□□ -1.39
VPS29-202ENST00000447578 SP8Q8IXZ3 490 aa6.34□□□□□ -1.39
VPS29-202ENST00000447578 GP6Q9HCN6 339 aa6.34□□□□□ -1.39
VPS29-202ENST00000447578 FGF10O15520 208 aaPredicted RBP6.33□□□□□ -1.4
VPS29-202ENST00000447578 ADRB1P08588 477 aa6.33□□□□□ -1.4
VPS29-202ENST00000447578 DBHP09172 617 aa6.33□□□□□ -1.4
VPS29-202ENST00000447578 TACR1P25103 407 aa6.33□□□□□ -1.4
VPS29-202ENST00000447578 NR1I3Q14994 352 aa6.33□□□□□ -1.4
VPS29-202ENST00000447578 FBXW10Q5XX13 1052 aa6.33□□□□□ -1.4
VPS29-202ENST00000447578 ADGRG2Q8IZP9 1017 aa6.33□□□□□ -1.4
VPS29-202ENST00000447578 FCRL3Q96P31 734 aaPredicted RBP6.33□□□□□ -1.4
VPS29-202ENST00000447578 BACH2Q9BYV9 841 aa6.33□□□□□ -1.4
VPS29-202ENST00000447578 LUC7LQ9NQ29 371 aaKnown RBP6.33□□□□□ -1.4
VPS29-202ENST00000447578 ZNF451Q9Y4E5 1061 aa6.33□□□□□ -1.4
VPS29-202ENST00000447578 RECKO95980 971 aa6.32□□□□□ -1.4
VPS29-202ENST00000447578 CELA3BP08861 270 aa6.32□□□□□ -1.4
VPS29-202ENST00000447578 ANKRD39Q53RE8 183 aa6.32□□□□□ -1.4
VPS29-202ENST00000447578 BICRALQ6AI39 1079 aa6.32□□□□□ -1.4
VPS29-202ENST00000447578 UNC5AQ6ZN44 842 aa6.32□□□□□ -1.4
VPS29-202ENST00000447578 FIBCD1Q8N539 461 aa6.32□□□□□ -1.4
VPS29-202ENST00000447578 FERD3LQ96RJ6 166 aa6.32□□□□□ -1.4
VPS29-202ENST00000447578 PPT2Q9UMR5 302 aa6.32□□□□□ -1.4
VPS29-202ENST00000447578 PCDHGB7Q9Y5F8 929 aa6.32□□□□□ -1.4
VPS29-202ENST00000447578 A0A1B0GTL3 188 aa6.31□□□□□ -1.4
VPS29-202ENST00000447578 A0A1W2PQJ5 194 aa6.31□□□□□ -1.4
VPS29-202ENST00000447578 F8W031 263 aaPredicted RBP6.31□□□□□ -1.4
VPS29-202ENST00000447578 IFNGR1P15260 489 aa6.31□□□□□ -1.4
VPS29-202ENST00000447578 ATF2P15336 505 aa6.31□□□□□ -1.4
VPS29-202ENST00000447578 PFKLP17858 780 aa6.31□□□□□ -1.4
VPS29-202ENST00000447578 CD247P20963 164 aa6.31□□□□□ -1.4
VPS29-202ENST00000447578 FBLN1P23142 703 aa6.31□□□□□ -1.4
VPS29-202ENST00000447578 PRR5P85299 388 aa6.31□□□□□ -1.4
VPS29-202ENST00000447578 ZNF394Q53GI3 561 aa6.31□□□□□ -1.4
VPS29-202ENST00000447578 PAQR3Q6TCH7 311 aa6.31□□□□□ -1.4
VPS29-202ENST00000447578 LSRQ86X29 649 aaPredicted RBP6.31□□□□□ -1.4
VPS29-202ENST00000447578 DRC1Q96MC2 740 aa6.31□□□□□ -1.4
VPS29-202ENST00000447578 C8orf37Q96NL8 207 aa6.31□□□□□ -1.4
VPS29-202ENST00000447578 SRRTQ9BXP5 876 aaKnown RBP6.31□□□□□ -1.4
VPS29-202ENST00000447578 NOL6Q9H6R4 1146 aaKnown RBP6.31□□□□□ -1.4
VPS29-202ENST00000447578 ZC3H12DA2A288 527 aaKnown RBP6.3□□□□□ -1.4
VPS29-202ENST00000447578 PRICKLE3O43900 615 aaPredicted RBP6.3□□□□□ -1.4
VPS29-202ENST00000447578 PLA2G1BP04054 148 aaKnown RBP6.3□□□□□ -1.4
VPS29-202ENST00000447578 CYBBP04839 570 aa6.3□□□□□ -1.4
VPS29-202ENST00000447578 CD3EP07766 207 aa6.3□□□□□ -1.4
VPS29-202ENST00000447578 NOP2P46087 812 aaKnown RBP6.3□□□□□ -1.4
VPS29-202ENST00000447578 SLURP1P55000 103 aa6.3□□□□□ -1.4
VPS29-202ENST00000447578 ZC3H6P61129 1189 aaKnown RBP6.3□□□□□ -1.4
VPS29-202ENST00000447578 FOXO4P98177 505 aa6.3□□□□□ -1.4
VPS29-202ENST00000447578 USP48Q86UV5 1035 aa6.3□□□□□ -1.4
VPS29-202ENST00000447578 ZDHHC15Q96MV8 337 aa6.3□□□□□ -1.4
VPS29-202ENST00000447578 TEPSINQ96N21 525 aa6.3□□□□□ -1.4
VPS29-202ENST00000447578 PTCHD1Q96NR3 888 aa6.3□□□□□ -1.4
VPS29-202ENST00000447578 TM9SF2Q99805 663 aa6.3□□□□□ -1.4
VPS29-202ENST00000447578 RXFP1Q9HBX9 757 aa6.3□□□□□ -1.4
VPS29-202ENST00000447578 PDLIM7Q9NR12 457 aa6.3□□□□□ -1.4
VPS29-202ENST00000447578 SUSD2Q9UGT4 822 aa6.3□□□□□ -1.4
VPS29-202ENST00000447578 FHOD1Q9Y613 1164 aa6.3□□□□□ -1.4
VPS29-202ENST00000447578 SRGAP3O43295 1099 aa6.29□□□□□ -1.4
VPS29-202ENST00000447578 IMPDH2P12268 514 aa6.29□□□□□ -1.4
VPS29-202ENST00000447578 ZNF76P36508 570 aa6.29□□□□□ -1.4
VPS29-202ENST00000447578 MC3RP41968 323 aa6.29□□□□□ -1.4
VPS29-202ENST00000447578 KCNC1P48547 511 aa6.29□□□□□ -1.4
VPS29-202ENST00000447578 PPP2R5DQ14738 602 aa6.29□□□□□ -1.4
VPS29-202ENST00000447578 ZXDCQ2QGD7 858 aaPredicted RBP6.29□□□□□ -1.4
VPS29-202ENST00000447578 VWA3BQ502W6 1294 aa6.29□□□□□ -1.4
VPS29-202ENST00000447578 CYP2R1Q6VVX0 501 aa6.29□□□□□ -1.4
VPS29-202ENST00000447578 FRMD5Q7Z6J6 570 aa6.29□□□□□ -1.4
VPS29-202ENST00000447578 TAB3Q8N5C8 712 aaPredicted RBP6.29□□□□□ -1.4
VPS29-202ENST00000447578 FNIP1Q8TF40 1166 aa6.29□□□□□ -1.4
VPS29-202ENST00000447578 SMARCC1Q92922 1105 aaPredicted RBP6.29□□□□□ -1.4
VPS29-202ENST00000447578 BCAS3Q9H6U6 928 aa6.29□□□□□ -1.4
VPS29-202ENST00000447578 LTBP3Q9NS15 1303 aa6.28□□□□□ -1.4
VPS29-202ENST00000447578 SCAMP3O14828 347 aaKnown RBP6.28□□□□□ -1.4
VPS29-202ENST00000447578 CBFA2T2O43439 604 aa6.28□□□□□ -1.4
VPS29-202ENST00000447578 GUCY2CP25092 1073 aa6.28□□□□□ -1.4
VPS29-202ENST00000447578 ERCC5P28715 1186 aaPredicted RBP6.28□□□□□ -1.4
VPS29-202ENST00000447578 TARBP2Q15633 366 aaKnown RBP6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms