RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 CEP290O15078 2479 aa22.33■■□□□ 1.16
SF3A1-202ENST00000411423 ADAMTS4O75173 837 aa22.32■■□□□ 1.16
SF3A1-202ENST00000411423 MYCNP04198 464 aaPredicted RBP22.32■■□□□ 1.16
SF3A1-202ENST00000411423 AKR1A1P14550 325 aa22.32■■□□□ 1.16
SF3A1-202ENST00000411423 SYN1P17600 705 aa22.32■■□□□ 1.16
SF3A1-202ENST00000411423 PTGS1P23219 599 aa22.32■■□□□ 1.16
SF3A1-202ENST00000411423 ATN1P54259 1190 aaPredicted RBP22.32■■□□□ 1.16
SF3A1-202ENST00000411423 BAATQ14032 418 aaPredicted RBP22.32■■□□□ 1.16
SF3A1-202ENST00000411423 SLC35G1Q2M3R5 365 aa22.32■■□□□ 1.16
SF3A1-202ENST00000411423 IFIT1BQ5T764 474 aaKnown RBP22.32■■□□□ 1.16
SF3A1-202ENST00000411423 SLC30A10Q6XR72 485 aa22.32■■□□□ 1.16
SF3A1-202ENST00000411423 MB21D2Q8IYB1 491 aaPredicted RBP22.32■■□□□ 1.16
SF3A1-202ENST00000411423 RBM27Q9P2N5 1060 aaKnown RBP22.32■■□□□ 1.16
SF3A1-202ENST00000411423 MYADML2A6NDP7 307 aa22.31■■□□□ 1.16
SF3A1-202ENST00000411423 RARBP10826 455 aa22.31■■□□□ 1.16
SF3A1-202ENST00000411423 ADGRF4Q8IZF3 695 aa22.31■■□□□ 1.16
SF3A1-202ENST00000411423 ARRDC4Q8NCT1 418 aa22.31■■□□□ 1.16
SF3A1-202ENST00000411423 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.3■■□□□ 1.16
SF3A1-202ENST00000411423 ADCYAP1R1P41586 468 aa22.3■■□□□ 1.16
SF3A1-202ENST00000411423 CDC37Q16543 378 aaPredicted RBP22.3■■□□□ 1.16
SF3A1-202ENST00000411423 ASPRV1Q53RT3 343 aa22.3■■□□□ 1.16
SF3A1-202ENST00000411423 FERMT2Q96AC1 680 aa22.3■■□□□ 1.16
SF3A1-202ENST00000411423 GPHNQ9NQX3 736 aaPredicted RBP22.3■■□□□ 1.16
SF3A1-202ENST00000411423 FAM184BQ9ULE4 1060 aa22.3■■□□□ 1.16
SF3A1-202ENST00000411423 WDR19Q8NEZ3 1342 aa22.3■■□□□ 1.16
SF3A1-202ENST00000411423 SYNRGQ9UMZ2 1314 aa22.3■■□□□ 1.16
SF3A1-202ENST00000411423 KBTBD13C9JR72 458 aa22.29■■□□□ 1.16
SF3A1-202ENST00000411423 TRDNQ13061 729 aa22.29■■□□□ 1.16
SF3A1-202ENST00000411423 CCDC144BQ3MJ40 725 aa22.29■■□□□ 1.16
SF3A1-202ENST00000411423 USH1GQ495M9 461 aa22.29■■□□□ 1.16
SF3A1-202ENST00000411423 TMEM63BQ5T3F8 832 aa22.29■■□□□ 1.16
SF3A1-202ENST00000411423 NCOA7Q8NI08 942 aa22.29■■□□□ 1.16
SF3A1-202ENST00000411423 CCDC136Q96JN2 1154 aa22.29■■□□□ 1.16
SF3A1-202ENST00000411423 ABHD16BQ9H3Z7 469 aa22.29■■□□□ 1.16
SF3A1-202ENST00000411423 JMJD4Q9H9V9 463 aa22.29■■□□□ 1.16
SF3A1-202ENST00000411423 MAD2L2Q9UI95 211 aa22.29■■□□□ 1.16
SF3A1-202ENST00000411423 IFIT3O14879 490 aaKnown RBP22.28■■□□□ 1.16
SF3A1-202ENST00000411423 SLC27A2O14975 620 aa22.28■■□□□ 1.16
SF3A1-202ENST00000411423 PARP1P09874 1014 aaKnown RBP22.28■■□□□ 1.16
SF3A1-202ENST00000411423 NECTIN1Q15223 517 aa22.28■■□□□ 1.16
SF3A1-202ENST00000411423 SLC39A5Q6ZMH5 540 aa22.28■■□□□ 1.16
SF3A1-202ENST00000411423 KLHDC9Q8NEP7 349 aa22.28■■□□□ 1.16
SF3A1-202ENST00000411423 IGDCC4Q8TDY8 1250 aa22.28■■□□□ 1.16
SF3A1-202ENST00000411423 TBC1D5Q92609 795 aa22.28■■□□□ 1.16
SF3A1-202ENST00000411423 PDGFCQ9NRA1 345 aa22.28■■□□□ 1.16
SF3A1-202ENST00000411423 PALM3A6NDB9 673 aaPredicted RBP22.27■■□□□ 1.16
SF3A1-202ENST00000411423 RTP1P59025 263 aa22.27■■□□□ 1.16
SF3A1-202ENST00000411423 QRICH1Q2TAL8 776 aa22.27■■□□□ 1.16
SF3A1-202ENST00000411423 CCSAPQ6IQ19 270 aaPredicted RBP22.27■■□□□ 1.16
SF3A1-202ENST00000411423 RALYLQ86SE5 291 aaKnown RBP22.27■■□□□ 1.16
SF3A1-202ENST00000411423 MORC4Q8TE76 937 aa22.27■■□□□ 1.16
SF3A1-202ENST00000411423 VAT1LQ9HCJ6 419 aa22.27■■□□□ 1.16
SF3A1-202ENST00000411423 ANO2Q9NQ90 1003 aa22.27■■□□□ 1.16
SF3A1-202ENST00000411423 PHF24Q9UPV7 400 aa22.27■■□□□ 1.16
SF3A1-202ENST00000411423 PTPDC1A2A3K4 754 aa22.26■■□□□ 1.15
SF3A1-202ENST00000411423 CTAGE5O15320 804 aa22.26■■□□□ 1.15
SF3A1-202ENST00000411423 PPP1R11O60927 126 aaPredicted RBP22.26■■□□□ 1.15
SF3A1-202ENST00000411423 DUSP11O75319 330 aaKnown RBP22.26■■□□□ 1.15
SF3A1-202ENST00000411423 SLC34A2O95436 690 aa22.26■■□□□ 1.15
SF3A1-202ENST00000411423 ALDH5A1P51649 535 aaPredicted RBP22.26■■□□□ 1.15
SF3A1-202ENST00000411423 RPS6P62753 249 aaKnown RBP22.26■■□□□ 1.15
SF3A1-202ENST00000411423 SNX17Q15036 470 aa22.26■■□□□ 1.15
SF3A1-202ENST00000411423 CREB3L3Q68CJ9 461 aa22.26■■□□□ 1.15
SF3A1-202ENST00000411423 TAPT1Q6NXT6 567 aa22.26■■□□□ 1.15
SF3A1-202ENST00000411423 KIAA1211Q6ZU35 1233 aa22.26■■□□□ 1.15
SF3A1-202ENST00000411423 EEPD1Q7L9B9 569 aa22.26■■□□□ 1.15
SF3A1-202ENST00000411423 FBXO16Q8IX29 292 aaPredicted RBP22.26■■□□□ 1.15
SF3A1-202ENST00000411423 GDF15Q99988 308 aa22.26■■□□□ 1.15
SF3A1-202ENST00000411423 ASB14A6NK59 587 aa22.25■■□□□ 1.15
SF3A1-202ENST00000411423 CALML3P27482 149 aa22.25■■□□□ 1.15
SF3A1-202ENST00000411423 TROAPQ12815 778 aa22.25■■□□□ 1.15
SF3A1-202ENST00000411423 GRM4Q14833 912 aa22.25■■□□□ 1.15
SF3A1-202ENST00000411423 WTAPQ15007 396 aa22.25■■□□□ 1.15
SF3A1-202ENST00000411423 TRIM60Q495X7 471 aa22.25■■□□□ 1.15
SF3A1-202ENST00000411423 RNF207Q6ZRF8 634 aa22.25■■□□□ 1.15
SF3A1-202ENST00000411423 MTMR8Q96EF0 704 aa22.25■■□□□ 1.15
SF3A1-202ENST00000411423 UPF3AQ9H1J1 476 aaKnown RBP22.25■■□□□ 1.15
SF3A1-202ENST00000411423 A0A1W2PQ45 241 aaPredicted RBP22.24■■□□□ 1.15
SF3A1-202ENST00000411423 A0A1W2PQY0 241 aa22.24■■□□□ 1.15
SF3A1-202ENST00000411423 KLRF2D3W0D1 207 aa22.24■■□□□ 1.15
SF3A1-202ENST00000411423 MAGEA10P43363 369 aaPredicted RBP22.24■■□□□ 1.15
SF3A1-202ENST00000411423 FXR1P51114 621 aaKnown RBP eCLIP22.24■■□□□ 1.15
SF3A1-202ENST00000411423 TMEM67Q5HYA8 995 aa22.24■■□□□ 1.15
SF3A1-202ENST00000411423 RNF180Q86T96 592 aa22.24■■□□□ 1.15
SF3A1-202ENST00000411423 LY9Q9HBG7 655 aa22.24■■□□□ 1.15
SF3A1-202ENST00000411423 GNEQ9Y223 722 aaKnown RBP22.24■■□□□ 1.15
SF3A1-202ENST00000411423 ATP11BQ9Y2G3 1177 aa22.24■■□□□ 1.15
SF3A1-202ENST00000411423 OPLAHO14841 1288 aa22.23■■□□□ 1.15
SF3A1-202ENST00000411423 CYTH3O43739 400 aa22.23■■□□□ 1.15
SF3A1-202ENST00000411423 SMPD1P17405 629 aa22.23■■□□□ 1.15
SF3A1-202ENST00000411423 GJA9P57773 515 aa22.23■■□□□ 1.15
SF3A1-202ENST00000411423 KCNA10Q16322 511 aa22.23■■□□□ 1.15
SF3A1-202ENST00000411423 MYL10Q9BUA6 226 aa22.23■■□□□ 1.15
SF3A1-202ENST00000411423 COL20A1Q9P218 1284 aa22.23■■□□□ 1.15
SF3A1-202ENST00000411423 PRC1O43663 620 aa22.22■■□□□ 1.15
SF3A1-202ENST00000411423 DHX16O60231 1041 aaKnown RBP22.22■■□□□ 1.15
SF3A1-202ENST00000411423 CDC45O75419 566 aa22.22■■□□□ 1.15
SF3A1-202ENST00000411423 ACLYP53396 1101 aa22.22■■□□□ 1.15
SF3A1-202ENST00000411423 TNFAIP2Q03169 654 aa22.22■■□□□ 1.15
SF3A1-202ENST00000411423 PNMA2Q9UL42 364 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms