RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 RAB33AQ14088 237 aa5.37□□□□□ -1.55
HMGB1-204ENST00000399489 CLEC4GQ6UXB4 293 aa5.37□□□□□ -1.55
HMGB1-204ENST00000399489 ANKS3Q6ZW76 656 aa5.37□□□□□ -1.55
HMGB1-204ENST00000399489 ERMP1Q7Z2K6 904 aa5.37□□□□□ -1.55
HMGB1-204ENST00000399489 DAGLBQ8NCG7 672 aa5.37□□□□□ -1.55
HMGB1-204ENST00000399489 PNISRQ8TF01 805 aaKnown RBP5.37□□□□□ -1.55
HMGB1-204ENST00000399489 APPBP2Q92624 585 aa5.37□□□□□ -1.55
HMGB1-204ENST00000399489 SEC16BQ96JE7 1060 aa5.37□□□□□ -1.55
HMGB1-204ENST00000399489 CEP89Q96ST8 783 aa5.37□□□□□ -1.55
HMGB1-204ENST00000399489 KCNK12Q9HB15 430 aa5.37□□□□□ -1.55
HMGB1-204ENST00000399489 OR14I1A6ND48 311 aa5.37□□□□□ -1.55
HMGB1-204ENST00000399489 GNALP38405 381 aa5.37□□□□□ -1.55
HMGB1-204ENST00000399489 MASP1P48740 699 aa5.37□□□□□ -1.55
HMGB1-204ENST00000399489 LRP10Q7Z4F1 713 aa5.37□□□□□ -1.55
HMGB1-204ENST00000399489 WAPLQ7Z5K2 1190 aa5.37□□□□□ -1.55
HMGB1-204ENST00000399489 ZNF655Q8N720 491 aaPredicted RBP5.37□□□□□ -1.55
HMGB1-204ENST00000399489 TSR2Q969E8 191 aaKnown RBP5.37□□□□□ -1.55
HMGB1-204ENST00000399489 KBTBD4Q9NVX7 518 aa5.37□□□□□ -1.55
HMGB1-204ENST00000399489 GMIPQ9P107 970 aa5.37□□□□□ -1.55
HMGB1-204ENST00000399489 TEX51A0A1B0GUA7 166 aa5.36□□□□□ -1.55
HMGB1-204ENST00000399489 ESYT3A0FGR9 886 aa5.36□□□□□ -1.55
HMGB1-204ENST00000399489 SUV39H1O43463 412 aa5.36□□□□□ -1.55
HMGB1-204ENST00000399489 ETFBP38117 255 aa5.36□□□□□ -1.55
HMGB1-204ENST00000399489 KIR2DL1P43626 348 aaPredicted RBP5.36□□□□□ -1.55
HMGB1-204ENST00000399489 KIR2DL2P43627 348 aaPredicted RBP5.36□□□□□ -1.55
HMGB1-204ENST00000399489 DLG4P78352 724 aa5.36□□□□□ -1.55
HMGB1-204ENST00000399489 FOXD4Q12950 439 aaPredicted RBP5.36□□□□□ -1.55
HMGB1-204ENST00000399489 ZNF385BQ569K4 471 aa5.36□□□□□ -1.55
HMGB1-204ENST00000399489 OLFML2BQ68BL8 750 aa5.36□□□□□ -1.55
HMGB1-204ENST00000399489 RAVER1Q8IY67 606 aaKnown RBP5.36□□□□□ -1.55
HMGB1-204ENST00000399489 LRRC3Q9BY71 257 aa5.36□□□□□ -1.55
HMGB1-204ENST00000399489 MCOLN1Q9GZU1 580 aa5.36□□□□□ -1.55
HMGB1-204ENST00000399489 ZNF552Q9H707 407 aaPredicted RBP5.36□□□□□ -1.55
HMGB1-204ENST00000399489 SP110Q9HB58 689 aa5.36□□□□□ -1.55
HMGB1-204ENST00000399489 HOMER2Q9NSB8 354 aa5.36□□□□□ -1.55
HMGB1-204ENST00000399489 CNOT6Q9ULM6 557 aaKnown RBP5.36□□□□□ -1.55
HMGB1-204ENST00000399489 PCDHB14Q9Y5E9 798 aa5.36□□□□□ -1.55
HMGB1-204ENST00000399489 COMMD10Q9Y6G5 202 aa5.36□□□□□ -1.55
HMGB1-204ENST00000399489 SHISA3A0PJX4 238 aa5.35□□□□□ -1.55
HMGB1-204ENST00000399489 CCDC189A1A4V9 331 aa5.35□□□□□ -1.55
HMGB1-204ENST00000399489 SLC22A31A6NKX4 558 aa5.35□□□□□ -1.55
HMGB1-204ENST00000399489 EIF4A3P38919 411 aaKnown RBP5.35□□□□□ -1.55
HMGB1-204ENST00000399489 HOMER1Q86YM7 354 aa5.35□□□□□ -1.55
HMGB1-204ENST00000399489 TMEM151BQ8IW70 566 aa5.35□□□□□ -1.55
HMGB1-204ENST00000399489 FBXO27Q8NI29 283 aa5.35□□□□□ -1.55
HMGB1-204ENST00000399489 IL17RAQ96F46 866 aa5.35□□□□□ -1.55
HMGB1-204ENST00000399489 SLC39A13Q96H72 371 aa5.35□□□□□ -1.55
HMGB1-204ENST00000399489 PCGF6Q9BYE7 350 aa5.35□□□□□ -1.55
HMGB1-204ENST00000399489 TMPRSS5Q9H3S3 457 aa5.35□□□□□ -1.55
HMGB1-204ENST00000399489 BRMS1Q9HCU9 246 aa5.35□□□□□ -1.55
HMGB1-204ENST00000399489 COPRSQ9NQ92 184 aa5.35□□□□□ -1.55
HMGB1-204ENST00000399489 TCEAL9Q9UHQ7 104 aa5.35□□□□□ -1.55
HMGB1-204ENST00000399489 CLEC3AO75596 197 aa5.34□□□□□ -1.55
HMGB1-204ENST00000399489 CCNFP41002 786 aa5.34□□□□□ -1.55
HMGB1-204ENST00000399489 NASPP49321 788 aaPredicted RBP5.34□□□□□ -1.55
HMGB1-204ENST00000399489 EXOSC10Q01780 885 aaKnown RBP5.34□□□□□ -1.55
HMGB1-204ENST00000399489 LRRFIP1Q32MZ4 808 aaKnown RBP5.34□□□□□ -1.55
HMGB1-204ENST00000399489 TIGD5Q53EQ6 642 aa5.34□□□□□ -1.55
HMGB1-204ENST00000399489 LILRB2Q8N423 598 aa5.34□□□□□ -1.55
HMGB1-204ENST00000399489 HNRNPLLQ8WVV9 542 aaKnown RBP5.34□□□□□ -1.55
HMGB1-204ENST00000399489 LINC01599Q8WXQ3 324 aa5.34□□□□□ -1.55
HMGB1-204ENST00000399489 TCTN2Q96GX1 697 aa5.34□□□□□ -1.55
HMGB1-204ENST00000399489 FEZ1Q99689 392 aa5.34□□□□□ -1.55
HMGB1-204ENST00000399489 HDAC8Q9BY41 377 aa5.34□□□□□ -1.55
HMGB1-204ENST00000399489 FOXP3Q9BZS1 431 aa5.34□□□□□ -1.55
HMGB1-204ENST00000399489 CRTAC1Q9NQ79 661 aa5.34□□□□□ -1.55
HMGB1-204ENST00000399489 TMEM260Q9NX78 707 aa5.34□□□□□ -1.55
HMGB1-204ENST00000399489 TCFL5Q9UL49 500 aa5.34□□□□□ -1.55
HMGB1-204ENST00000399489 MRVI1Q9Y6F6 885 aa5.34□□□□□ -1.55
HMGB1-204ENST00000399489 CCDC85CA6NKD9 419 aa5.34□□□□□ -1.56
HMGB1-204ENST00000399489 RBAK-RBAKDNI3L0D1 243 aa5.34□□□□□ -1.56
HMGB1-204ENST00000399489 ATE1O95260 518 aa5.34□□□□□ -1.56
HMGB1-204ENST00000399489 SYPP08247 313 aa5.34□□□□□ -1.56
HMGB1-204ENST00000399489 PTMSP20962 102 aa5.34□□□□□ -1.56
HMGB1-204ENST00000399489 GARTP22102 1010 aa5.34□□□□□ -1.56
HMGB1-204ENST00000399489 CDKN1CP49918 316 aaPredicted RBP5.34□□□□□ -1.56
HMGB1-204ENST00000399489 ADGRF1Q5T601 910 aa5.34□□□□□ -1.56
HMGB1-204ENST00000399489 CEP128Q6ZU80 1094 aa5.34□□□□□ -1.56
HMGB1-204ENST00000399489 USHBP1Q8N6Y0 703 aa5.34□□□□□ -1.56
HMGB1-204ENST00000399489 GPATCH11Q8N954 259 aa5.34□□□□□ -1.56
HMGB1-204ENST00000399489 MAP6Q96JE9 813 aa5.34□□□□□ -1.56
HMGB1-204ENST00000399489 SCYL1Q96KG9 808 aa5.34□□□□□ -1.56
HMGB1-204ENST00000399489 SIRT5Q9NXA8 310 aa5.34□□□□□ -1.56
HMGB1-204ENST00000399489 RPS6KL1Q9Y6S9 549 aa5.34□□□□□ -1.56
HMGB1-204ENST00000399489 ABLIM1O14639 778 aa5.33□□□□□ -1.56
HMGB1-204ENST00000399489 KIF3BO15066 747 aa5.33□□□□□ -1.56
HMGB1-204ENST00000399489 NRDCO43847 1150 aa5.33□□□□□ -1.56
HMGB1-204ENST00000399489 WDHD1O75717 1129 aaPredicted RBP5.33□□□□□ -1.56
HMGB1-204ENST00000399489 INHBBP09529 407 aa5.33□□□□□ -1.56
HMGB1-204ENST00000399489 ZNF165P49910 485 aa5.33□□□□□ -1.56
HMGB1-204ENST00000399489 NBPF9Q3BBW0 867 aa5.33□□□□□ -1.56
HMGB1-204ENST00000399489 NBPF12Q5TAG4 269 aaPredicted RBP5.33□□□□□ -1.56
HMGB1-204ENST00000399489 TCERG1LQ5VWI1 586 aa5.33□□□□□ -1.56
HMGB1-204ENST00000399489 CDCP2Q5VXM1 449 aa5.33□□□□□ -1.56
HMGB1-204ENST00000399489 FBXL19Q6PCT2 694 aa5.33□□□□□ -1.56
HMGB1-204ENST00000399489 C16orf86Q6ZW13 317 aa5.33□□□□□ -1.56
HMGB1-204ENST00000399489 SIRT2Q8IXJ6 389 aa5.33□□□□□ -1.56
HMGB1-204ENST00000399489 LINC00116Q8NCU8 138 aa5.33□□□□□ -1.56
HMGB1-204ENST00000399489 ZNF296Q8WUU4 475 aaPredicted RBP5.33□□□□□ -1.56
HMGB1-204ENST00000399489 VWCEQ96DN2 955 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms