RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 CCP110O43303 1012 aa10.2□□□□□ -0.78
TDP1-202ENST00000393452 STX10O60499 249 aa10.2□□□□□ -0.78
TDP1-202ENST00000393452 RHOBTB3O94955 611 aa10.2□□□□□ -0.78
TDP1-202ENST00000393452 PRCPP42785 496 aa10.2□□□□□ -0.78
TDP1-202ENST00000393452 CLK2P49760 499 aaKnown RBP10.2□□□□□ -0.78
TDP1-202ENST00000393452 RBM10P98175 930 aaKnown RBP10.2□□□□□ -0.78
TDP1-202ENST00000393452 SH3BP5LQ7L8J4 393 aa10.2□□□□□ -0.78
TDP1-202ENST00000393452 TSC1Q92574 1164 aa10.2□□□□□ -0.78
TDP1-202ENST00000393452 MAP7D2Q96T17 732 aa10.2□□□□□ -0.78
TDP1-202ENST00000393452 TMEM260Q9NX78 707 aa10.2□□□□□ -0.78
TDP1-202ENST00000393452 NYAP2Q9P242 653 aa10.2□□□□□ -0.78
TDP1-202ENST00000393452 ZBTB5O15062 677 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 PLCG1P19174 1290 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 CHRNA5P30532 468 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 GOLGA8FQ08AF8 430 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 GOLGA8DPQ0D2H9 430 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 SLC15A2Q16348 729 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 CC2D2BQ6DHV5 1058 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 TTBK2Q6IQ55 1244 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 TATDN1Q6P1N9 297 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 MTERF4Q7Z6M4 381 aaKnown RBP10.19□□□□□ -0.78
TDP1-202ENST00000393452 CABP7Q86V35 215 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 POTEDQ86YR6 584 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 ADSSL1Q8N142 457 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 ZNF710Q8N1W2 664 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 KIF18AQ8NI77 898 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 NELFBQ8WX92 580 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 MMTAG2Q9BU76 263 aaKnown RBP10.19□□□□□ -0.78
TDP1-202ENST00000393452 KANSL2Q9H9L4 492 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 LIMA1Q9UHB6 759 aaKnown RBP10.19□□□□□ -0.78
TDP1-202ENST00000393452 GDAQ9Y2T3 454 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 ATRNL1Q5VV63 1379 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 MPHOSPH10O00566 681 aaKnown RBP10.19□□□□□ -0.78
TDP1-202ENST00000393452 SLURP2P0DP57 97 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 FXR2P51116 673 aaKnown RBP eCLIP10.19□□□□□ -0.78
TDP1-202ENST00000393452 CACNB3P54284 484 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 SPAG1Q07617 926 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 HSP90AA2PQ14568 343 aaPredicted RBP10.19□□□□□ -0.78
TDP1-202ENST00000393452 SYCP1Q15431 976 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 KMT5BQ4FZB7 885 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 GIMAP8Q8ND71 665 aaPredicted RBP10.19□□□□□ -0.78
TDP1-202ENST00000393452 RASSF8Q8NHQ8 419 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 BAG1Q99933 345 aaPredicted RBP10.19□□□□□ -0.78
TDP1-202ENST00000393452 PDCL3Q9H2J4 239 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 ITIH6Q6UXX5 1313 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 ARFGEF1Q9Y6D6 1849 aa10.19□□□□□ -0.78
TDP1-202ENST00000393452 COL2A1P02458 1487 aaPredicted RBP10.19□□□□□ -0.78
TDP1-202ENST00000393452 TECP42680 631 aa10.18□□□□□ -0.78
TDP1-202ENST00000393452 TCP10Q12799 353 aa10.18□□□□□ -0.78
TDP1-202ENST00000393452 KRT31Q15323 416 aa10.18□□□□□ -0.78
TDP1-202ENST00000393452 AOC3Q16853 763 aa10.18□□□□□ -0.78
TDP1-202ENST00000393452 CERKLQ49MI3 558 aaPredicted RBP10.18□□□□□ -0.78
TDP1-202ENST00000393452 PPP4R3AQ6IN85 833 aa10.18□□□□□ -0.78
TDP1-202ENST00000393452 SIAH1Q8IUQ4 282 aa10.18□□□□□ -0.78
TDP1-202ENST00000393452 PANX2Q96RD6 677 aa10.18□□□□□ -0.78
TDP1-202ENST00000393452 C7orf25Q9BPX7 421 aa10.18□□□□□ -0.78
TDP1-202ENST00000393452 TRIM9Q9C026 710 aa10.18□□□□□ -0.78
TDP1-202ENST00000393452 USP17L10C9JJH3 530 aa10.18□□□□□ -0.78
TDP1-202ENST00000393452 H7C1D1 291 aa10.18□□□□□ -0.78
TDP1-202ENST00000393452 EEF2P13639 858 aaKnown RBP10.18□□□□□ -0.78
TDP1-202ENST00000393452 ADKP55263 362 aaKnown RBP10.18□□□□□ -0.78
TDP1-202ENST00000393452 PDIA5Q14554 519 aa10.18□□□□□ -0.78
TDP1-202ENST00000393452 CALCRLQ16602 461 aa10.18□□□□□ -0.78
TDP1-202ENST00000393452 CCDC96Q2M329 555 aa10.18□□□□□ -0.78
TDP1-202ENST00000393452 FILIP1LQ4L180 1135 aa10.18□□□□□ -0.78
TDP1-202ENST00000393452 KCTD1Q719H9 257 aa10.18□□□□□ -0.78
TDP1-202ENST00000393452 REXO1L1PQ8IX06 675 aa10.18□□□□□ -0.78
TDP1-202ENST00000393452 DCAF4Q8WV16 495 aa10.18□□□□□ -0.78
TDP1-202ENST00000393452 ZNF592Q92610 1267 aa10.18□□□□□ -0.78
TDP1-202ENST00000393452 CAMKK2Q96RR4 588 aa10.18□□□□□ -0.78
TDP1-202ENST00000393452 PLIN2Q99541 437 aa10.18□□□□□ -0.78
TDP1-202ENST00000393452 FAM196BA6NMK8 535 aa10.17□□□□□ -0.78
TDP1-202ENST00000393452 SLC37A4O43826 429 aa10.17□□□□□ -0.78
TDP1-202ENST00000393452 ENTPD3O75355 529 aa10.17□□□□□ -0.78
TDP1-202ENST00000393452 TDP2O95551 362 aa10.17□□□□□ -0.78
TDP1-202ENST00000393452 SLC16A2P36021 539 aa10.17□□□□□ -0.78
TDP1-202ENST00000393452 RBM5P52756 815 aaKnown RBP eCLIP10.17□□□□□ -0.78
TDP1-202ENST00000393452 MRPL12P52815 198 aaKnown RBP10.17□□□□□ -0.78
TDP1-202ENST00000393452 ETF1P62495 437 aaKnown RBP10.17□□□□□ -0.78
TDP1-202ENST00000393452 TCP11X2Q5H9J9 407 aa10.17□□□□□ -0.78
TDP1-202ENST00000393452 TRIM65Q6PJ69 517 aa10.17□□□□□ -0.78
TDP1-202ENST00000393452 IRF2BP1Q8IU81 584 aa10.17□□□□□ -0.78
TDP1-202ENST00000393452 SUPT20HQ8NEM7 779 aa10.17□□□□□ -0.78
TDP1-202ENST00000393452 ANKRD7Q92527 254 aa10.17□□□□□ -0.78
TDP1-202ENST00000393452 CUL5Q93034 780 aa10.17□□□□□ -0.78
TDP1-202ENST00000393452 GTPBP4Q9BZE4 634 aaKnown RBP10.17□□□□□ -0.78
TDP1-202ENST00000393452 ATF5Q9Y2D1 282 aaPredicted RBP10.17□□□□□ -0.78
TDP1-202ENST00000393452 YDJCA8MPS7 323 aa10.17□□□□□ -0.78
TDP1-202ENST00000393452 AKR1B15C9JRZ8 316 aaPredicted RBP10.17□□□□□ -0.78
TDP1-202ENST00000393452 ZSCAN12O43309 604 aa10.17□□□□□ -0.78
TDP1-202ENST00000393452 FECHP22830 423 aa10.17□□□□□ -0.78
TDP1-202ENST00000393452 ATP2B2Q01814 1243 aa10.17□□□□□ -0.78
TDP1-202ENST00000393452 GRB10Q13322 594 aa10.17□□□□□ -0.78
TDP1-202ENST00000393452 SHROOM1Q2M3G4 852 aaPredicted RBP10.17□□□□□ -0.78
TDP1-202ENST00000393452 COBLL1Q53SF7 1204 aa10.17□□□□□ -0.78
TDP1-202ENST00000393452 TMEM179Q6ZVK1 233 aa10.17□□□□□ -0.78
TDP1-202ENST00000393452 GLT8D2Q9H1C3 349 aa10.17□□□□□ -0.78
TDP1-202ENST00000393452 L2HGDHQ9H9P8 463 aa10.17□□□□□ -0.78
TDP1-202ENST00000393452 ZNF219Q9P2Y4 722 aaPredicted RBP10.17□□□□□ -0.78
TDP1-202ENST00000393452 STK17AQ9UEE5 414 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms