RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 USP17L15C9J2P7 530 aa15.67■□□□□ 0.1
PTPRF-202ENST00000372405 USP17L13C9JLJ4 530 aa15.67■□□□□ 0.1
PTPRF-202ENST00000372405 USP17L11C9JVI0 530 aa15.67■□□□□ 0.1
PTPRF-202ENST00000372405 USP17L18D6R9N7 530 aa15.67■□□□□ 0.1
PTPRF-202ENST00000372405 USP17L22D6RA61 530 aa15.67■□□□□ 0.1
PTPRF-202ENST00000372405 USP17L17D6RBQ6 530 aa15.67■□□□□ 0.1
PTPRF-202ENST00000372405 USP17L19D6RCP7 530 aa15.67■□□□□ 0.1
PTPRF-202ENST00000372405 USP17L20D6RJB6 530 aa15.67■□□□□ 0.1
PTPRF-202ENST00000372405 CTNND1O60716 968 aaKnown RBP15.67■□□□□ 0.1
PTPRF-202ENST00000372405 USP17L24Q0WX57 530 aa15.67■□□□□ 0.1
PTPRF-202ENST00000372405 IQCB1Q15051 598 aa15.67■□□□□ 0.1
PTPRF-202ENST00000372405 DPCR1Q3MIW9 517 aa15.67■□□□□ 0.1
PTPRF-202ENST00000372405 USP17L6PQ6QN14 398 aa15.67■□□□□ 0.1
PTPRF-202ENST00000372405 GRAMD1CQ8IYS0 662 aa15.67■□□□□ 0.1
PTPRF-202ENST00000372405 P2RX7Q99572 595 aaKnown RBP15.67■□□□□ 0.1
PTPRF-202ENST00000372405 USP25Q9UHP3 1055 aa15.67■□□□□ 0.1
PTPRF-202ENST00000372405 BIN1O00499 593 aa15.66■□□□□ 0.1
PTPRF-202ENST00000372405 MEIS2O14770 477 aa15.66■□□□□ 0.1
PTPRF-202ENST00000372405 OPLAHO14841 1288 aa15.66■□□□□ 0.1
PTPRF-202ENST00000372405 PRR29P0C7W0 189 aa15.66■□□□□ 0.1
PTPRF-202ENST00000372405 MRPL12P52815 198 aaKnown RBP15.66■□□□□ 0.1
PTPRF-202ENST00000372405 FBXO11Q86XK2 927 aa15.66■□□□□ 0.1
PTPRF-202ENST00000372405 SH2D4AQ9H788 454 aa15.66■□□□□ 0.1
PTPRF-202ENST00000372405 FBXO28Q9NVF7 368 aa15.66■□□□□ 0.1
PTPRF-202ENST00000372405 PHIPQ8WWQ0 1821 aa15.66■□□□□ 0.1
PTPRF-202ENST00000372405 LAD1O00515 517 aa15.66■□□□□ 0.1
PTPRF-202ENST00000372405 NEMFO60524 1076 aa15.66■□□□□ 0.1
PTPRF-202ENST00000372405 CDC25AP30304 524 aa15.66■□□□□ 0.1
PTPRF-202ENST00000372405 LONP1P36776 959 aaKnown RBP15.66■□□□□ 0.1
PTPRF-202ENST00000372405 PRPHP41219 470 aa15.66■□□□□ 0.1
PTPRF-202ENST00000372405 DGKZQ13574 1117 aa15.66■□□□□ 0.1
PTPRF-202ENST00000372405 E2F4Q16254 413 aa15.66■□□□□ 0.1
PTPRF-202ENST00000372405 USH1GQ495M9 461 aa15.66■□□□□ 0.1
PTPRF-202ENST00000372405 ANP32BQ92688 251 aaKnown RBP15.66■□□□□ 0.1
PTPRF-202ENST00000372405 DHX58Q96C10 678 aa15.66■□□□□ 0.1
PTPRF-202ENST00000372405 ANO10Q9NW15 660 aa15.66■□□□□ 0.1
PTPRF-202ENST00000372405 ZNF112Q9UJU3 913 aa15.66■□□□□ 0.1
PTPRF-202ENST00000372405 PCDHA5Q9Y5H7 936 aa15.66■□□□□ 0.1
PTPRF-202ENST00000372405 PP2D1A8MPX8 630 aa15.65■□□□□ 0.1
PTPRF-202ENST00000372405 SLC37A4O43826 429 aa15.65■□□□□ 0.1
PTPRF-202ENST00000372405 TDP2O95551 362 aa15.65■□□□□ 0.1
PTPRF-202ENST00000372405 CAVIN2O95810 425 aa15.65■□□□□ 0.1
PTPRF-202ENST00000372405 DTHD1Q6ZMT9 781 aa15.65■□□□□ 0.1
PTPRF-202ENST00000372405 POTEDQ86YR6 584 aa15.65■□□□□ 0.1
PTPRF-202ENST00000372405 PLA2G6O60733 806 aa15.64■□□□□ 0.09
PTPRF-202ENST00000372405 OR52Z1P0C646 297 aa15.64■□□□□ 0.09
PTPRF-202ENST00000372405 NLRP12P59046 1061 aa15.64■□□□□ 0.09
PTPRF-202ENST00000372405 POSTNQ15063 836 aa15.64■□□□□ 0.09
PTPRF-202ENST00000372405 C9orf131Q5VYM1 1079 aa15.64■□□□□ 0.09
PTPRF-202ENST00000372405 SH3RF1Q7Z6J0 888 aa15.64■□□□□ 0.09
PTPRF-202ENST00000372405 RANBP17Q9H2T7 1088 aaKnown RBP15.64■□□□□ 0.09
PTPRF-202ENST00000372405 GINM1Q9NU53 330 aa15.64■□□□□ 0.09
PTPRF-202ENST00000372405 SLFN14P0C7P3 912 aa15.64■□□□□ 0.09
PTPRF-202ENST00000372405 BMP6P22004 513 aa15.64■□□□□ 0.09
PTPRF-202ENST00000372405 ORC2Q13416 577 aaPredicted RBP15.64■□□□□ 0.09
PTPRF-202ENST00000372405 DCAF15Q66K64 600 aa15.64■□□□□ 0.09
PTPRF-202ENST00000372405 ISM2Q6H9L7 571 aa15.64■□□□□ 0.09
PTPRF-202ENST00000372405 DHX40Q8IX18 779 aaKnown RBP15.64■□□□□ 0.09
PTPRF-202ENST00000372405 ZKSCAN4Q969J2 545 aaPredicted RBP15.64■□□□□ 0.09
PTPRF-202ENST00000372405 KIFC2Q96AC6 838 aa15.64■□□□□ 0.09
PTPRF-202ENST00000372405 MTMR9Q96QG7 549 aa15.64■□□□□ 0.09
PTPRF-202ENST00000372405 FEZ1Q99689 392 aa15.64■□□□□ 0.09
PTPRF-202ENST00000372405 KIAA1683Q9H0B3 1180 aa15.64■□□□□ 0.09
PTPRF-202ENST00000372405 PARP14Q460N5 1801 aa15.63■□□□□ 0.09
PTPRF-202ENST00000372405 SARSP49591 514 aaKnown RBP15.63■□□□□ 0.09
PTPRF-202ENST00000372405 NT5DC1Q5TFE4 455 aa15.63■□□□□ 0.09
PTPRF-202ENST00000372405 DLK2Q6UY11 383 aa15.63■□□□□ 0.09
PTPRF-202ENST00000372405 CHURC1Q8WUH1 139 aa15.63■□□□□ 0.09
PTPRF-202ENST00000372405 GLT8D2Q9H1C3 349 aa15.63■□□□□ 0.09
PTPRF-202ENST00000372405 PPP4R3AQ6IN85 833 aa15.62■□□□□ 0.09
PTPRF-202ENST00000372405 PDXDC2PQ6P474 469 aa15.62■□□□□ 0.09
PTPRF-202ENST00000372405 SPATA20Q8TB22 786 aa15.62■□□□□ 0.09
PTPRF-202ENST00000372405 CRYGNQ8WXF5 182 aa15.62■□□□□ 0.09
PTPRF-202ENST00000372405 PAGE5Q96GU1 130 aa15.62■□□□□ 0.09
PTPRF-202ENST00000372405 WRNIP1Q96S55 665 aa15.62■□□□□ 0.09
PTPRF-202ENST00000372405 MTRQ99707 1265 aa15.62■□□□□ 0.09
PTPRF-202ENST00000372405 FEM1BQ9UK73 627 aa15.62■□□□□ 0.09
PTPRF-202ENST00000372405 ADCY5O95622 1261 aa15.62■□□□□ 0.09
PTPRF-202ENST00000372405 CASP1P29466 404 aa15.62■□□□□ 0.09
PTPRF-202ENST00000372405 KARSQ15046 597 aaKnown RBP15.62■□□□□ 0.09
PTPRF-202ENST00000372405 CCDC174Q6PII3 467 aa15.62■□□□□ 0.09
PTPRF-202ENST00000372405 FAM160B2Q86V87 743 aa15.62■□□□□ 0.09
PTPRF-202ENST00000372405 CEP57L1Q8IYX8 460 aa15.62■□□□□ 0.09
PTPRF-202ENST00000372405 SCYL3Q8IZE3 742 aa15.62■□□□□ 0.09
PTPRF-202ENST00000372405 LRRC15Q8TF66 581 aa15.62■□□□□ 0.09
PTPRF-202ENST00000372405 ANO3Q9BYT9 981 aa15.62■□□□□ 0.09
PTPRF-202ENST00000372405 ADARB2Q9NS39 739 aaKnown RBP15.62■□□□□ 0.09
PTPRF-202ENST00000372405 EMILIN3Q9NT22 766 aa15.62■□□□□ 0.09
PTPRF-202ENST00000372405 PPP2R3BQ9Y5P8 575 aa15.62■□□□□ 0.09
PTPRF-202ENST00000372405 PAPPA2Q9BXP8 1791 aa15.61■□□□□ 0.09
PTPRF-202ENST00000372405 PITPNM2Q9BZ72 1349 aa15.61■□□□□ 0.09
PTPRF-202ENST00000372405 PTPRAP18433 802 aa15.61■□□□□ 0.09
PTPRF-202ENST00000372405 MTMR2Q13614 643 aa15.61■□□□□ 0.09
PTPRF-202ENST00000372405 NAALADL2Q58DX5 795 aa15.61■□□□□ 0.09
PTPRF-202ENST00000372405 KANK3Q6NY19 840 aa15.61■□□□□ 0.09
PTPRF-202ENST00000372405 LPAR1Q92633 364 aa15.61■□□□□ 0.09
PTPRF-202ENST00000372405 KLRG1Q96E93 195 aa15.61■□□□□ 0.09
PTPRF-202ENST00000372405 MAN1B1Q9UKM7 699 aa15.61■□□□□ 0.09
PTPRF-202ENST00000372405 WDR46O15213 610 aaKnown RBP15.6■□□□□ 0.09
PTPRF-202ENST00000372405 TECP42680 631 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 164.4 ms