RNA–Protein interactions for RNA: ENST00000352393.8

CPNE1-202, Transcript of copine 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE1, Length 2,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-202ENST00000352393 PLCG1P19174 1290 aa27.44■■□□□ 1.98
CPNE1-202ENST00000352393 CCDC178Q5BJE1 867 aa27.44■■□□□ 1.98
CPNE1-202ENST00000352393 KIAA1328Q86T90 577 aa27.44■■□□□ 1.98
CPNE1-202ENST00000352393 DZIP1Q86YF9 867 aaKnown RBP27.44■■□□□ 1.98
CPNE1-202ENST00000352393 DYNLL2Q96FJ2 89 aa27.44■■□□□ 1.98
CPNE1-202ENST00000352393 AK8Q96MA6 479 aa27.44■■□□□ 1.98
CPNE1-202ENST00000352393 EIF3CQ99613 913 aaKnown RBP27.44■■□□□ 1.98
CPNE1-202ENST00000352393 ACBD3Q9H3P7 528 aa27.44■■□□□ 1.98
CPNE1-202ENST00000352393 MED4Q9NPJ6 270 aa27.44■■□□□ 1.98
CPNE1-202ENST00000352393 KRT86O43790 486 aa27.44■■□□□ 1.98
CPNE1-202ENST00000352393 ZBED6P86452 979 aa27.44■■□□□ 1.98
CPNE1-202ENST00000352393 CCDC170Q8IYT3 715 aa27.44■■□□□ 1.98
CPNE1-202ENST00000352393 LINC00116Q8NCU8 138 aa27.44■■□□□ 1.98
CPNE1-202ENST00000352393 RPGRIP1Q96KN7 1286 aa27.44■■□□□ 1.98
CPNE1-202ENST00000352393 PURBQ96QR8 312 aaKnown RBP27.44■■□□□ 1.98
CPNE1-202ENST00000352393 TRIM9Q9C026 710 aa27.44■■□□□ 1.98
CPNE1-202ENST00000352393 TCP11L1Q9NUJ3 509 aa27.44■■□□□ 1.98
CPNE1-202ENST00000352393 BICDL2A1A5D9 508 aa27.43■■□□□ 1.98
CPNE1-202ENST00000352393 RCCD1A6NED2 376 aa27.43■■□□□ 1.98
CPNE1-202ENST00000352393 RGL2O15211 777 aa27.43■■□□□ 1.98
CPNE1-202ENST00000352393 CKAP4Q07065 602 aaKnown RBP27.43■■□□□ 1.98
CPNE1-202ENST00000352393 TBC1D9BQ66K14 1250 aa27.43■■□□□ 1.98
CPNE1-202ENST00000352393 BICDL1Q6ZP65 573 aa27.43■■□□□ 1.98
CPNE1-202ENST00000352393 CABP7Q86V35 215 aa27.43■■□□□ 1.98
CPNE1-202ENST00000352393 CNOT6LQ96LI5 555 aaKnown RBP27.43■■□□□ 1.98
CPNE1-202ENST00000352393 TARSL2A2RTX5 802 aaKnown RBP27.43■■□□□ 1.98
CPNE1-202ENST00000352393 USP17L3A6NCW0 530 aa27.43■■□□□ 1.98
CPNE1-202ENST00000352393 USP17L4A6NCW7 530 aa27.43■■□□□ 1.98
CPNE1-202ENST00000352393 TRIM21P19474 475 aaKnown RBP27.43■■□□□ 1.98
CPNE1-202ENST00000352393 MCM3P25205 808 aa27.43■■□□□ 1.98
CPNE1-202ENST00000352393 GTF2E1P29083 439 aaPredicted RBP27.43■■□□□ 1.98
CPNE1-202ENST00000352393 KLK7P49862 253 aa27.43■■□□□ 1.98
CPNE1-202ENST00000352393 HSP90B2PQ58FF3 399 aa27.43■■□□□ 1.98
CPNE1-202ENST00000352393 USP17L1Q7RTZ2 530 aa27.43■■□□□ 1.98
CPNE1-202ENST00000352393 LACRTQ9GZZ8 138 aa27.43■■□□□ 1.98
CPNE1-202ENST00000352393 NHEJ1Q9H9Q4 299 aaPredicted RBP27.43■■□□□ 1.98
CPNE1-202ENST00000352393 CWC15Q9P013 229 aaKnown RBP27.43■■□□□ 1.98
CPNE1-202ENST00000352393 ANO9A1A5B4 782 aa27.42■■□□□ 1.98
CPNE1-202ENST00000352393 PALM3A6NDB9 673 aaPredicted RBP27.42■■□□□ 1.98
CPNE1-202ENST00000352393 SRGAP2O75044 1071 aa27.42■■□□□ 1.98
CPNE1-202ENST00000352393 AARSP49588 968 aaKnown RBP eCLIP27.42■■□□□ 1.98
CPNE1-202ENST00000352393 MIIPQ5JXC2 388 aa27.42■■□□□ 1.98
CPNE1-202ENST00000352393 SPTY2D1Q68D10 685 aaPredicted RBP27.42■■□□□ 1.98
CPNE1-202ENST00000352393 TXNRD3Q86VQ6 643 aa27.42■■□□□ 1.98
CPNE1-202ENST00000352393 FAM114A1Q8IWE2 563 aa27.42■■□□□ 1.98
CPNE1-202ENST00000352393 ZSCAN29Q8IWY8 852 aaPredicted RBP27.42■■□□□ 1.98
CPNE1-202ENST00000352393 CCDC102AQ96A19 550 aa27.42■■□□□ 1.98
CPNE1-202ENST00000352393 C7orf25Q9BPX7 421 aa27.42■■□□□ 1.98
CPNE1-202ENST00000352393 ZNHIT6Q9NWK9 470 aaKnown RBP27.42■■□□□ 1.98
CPNE1-202ENST00000352393 JAG2Q9Y219 1238 aa27.42■■□□□ 1.98
CPNE1-202ENST00000352393 OR52Z1P0C646 297 aa27.41■■□□□ 1.98
CPNE1-202ENST00000352393 CDK17Q00537 523 aa27.41■■□□□ 1.98
CPNE1-202ENST00000352393 FIGNQ5HY92 759 aa27.41■■□□□ 1.98
CPNE1-202ENST00000352393 ANKRD40Q6AI12 368 aa27.41■■□□□ 1.98
CPNE1-202ENST00000352393 A0A1W2PQJ5 194 aa27.41■■□□□ 1.98
CPNE1-202ENST00000352393 PDE4DQ08499 809 aa27.41■■□□□ 1.98
CPNE1-202ENST00000352393 TBC1D8BQ0IIM8 1120 aa27.41■■□□□ 1.98
CPNE1-202ENST00000352393 TXNRD1Q16881 649 aa27.41■■□□□ 1.98
CPNE1-202ENST00000352393 CCDC47Q96A33 483 aaKnown RBP27.41■■□□□ 1.98
CPNE1-202ENST00000352393 ERGIC2Q96RQ1 377 aa27.41■■□□□ 1.98
CPNE1-202ENST00000352393 RPS6KA5O75582 802 aa27.4■■□□□ 1.98
CPNE1-202ENST00000352393 PPP1R2P41236 205 aa27.4■■□□□ 1.98
CPNE1-202ENST00000352393 ZMYND12Q9H0C1 365 aa27.4■■□□□ 1.98
CPNE1-202ENST00000352393 TMEM51Q9NW97 253 aa27.4■■□□□ 1.98
CPNE1-202ENST00000352393 RNF216Q9NWF9 866 aaPredicted RBP27.4■■□□□ 1.98
CPNE1-202ENST00000352393 CDK5RAP2Q96SN8 1893 aa27.4■■□□□ 1.98
CPNE1-202ENST00000352393 TSPY3P0CV98 308 aa27.4■■□□□ 1.98
CPNE1-202ENST00000352393 TSPY8P0CW00 308 aa27.4■■□□□ 1.98
CPNE1-202ENST00000352393 STK4Q13043 487 aa27.4■■□□□ 1.98
CPNE1-202ENST00000352393 MAP9Q49MG5 647 aa27.4■■□□□ 1.98
CPNE1-202ENST00000352393 COBLL1Q53SF7 1204 aa27.4■■□□□ 1.98
CPNE1-202ENST00000352393 KRT25Q7Z3Z0 450 aa27.4■■□□□ 1.98
CPNE1-202ENST00000352393 SH3RF3Q8TEJ3 882 aaPredicted RBP27.4■■□□□ 1.98
CPNE1-202ENST00000352393 TRERF1Q96PN7 1200 aa27.4■■□□□ 1.98
CPNE1-202ENST00000352393 LZTS2Q9BRK4 669 aa27.4■■□□□ 1.98
CPNE1-202ENST00000352393 MKNK2Q9HBH9 465 aa27.4■■□□□ 1.98
CPNE1-202ENST00000352393 ZBTB9Q96C00 473 aa27.39■■□□□ 1.98
CPNE1-202ENST00000352393 TMEM47Q9BQJ4 181 aa27.39■■□□□ 1.98
CPNE1-202ENST00000352393 TSPYL1Q9H0U9 437 aa27.39■■□□□ 1.98
CPNE1-202ENST00000352393 IPO7O95373 1038 aaKnown RBP27.38■■□□□ 1.97
CPNE1-202ENST00000352393 ASIC1P78348 528 aa27.38■■□□□ 1.97
CPNE1-202ENST00000352393 LEKR1Q6ZMV7 388 aa27.38■■□□□ 1.97
CPNE1-202ENST00000352393 CAPZA3Q96KX2 299 aa27.38■■□□□ 1.97
CPNE1-202ENST00000352393 NLRP3Q96P20 1036 aa27.38■■□□□ 1.97
CPNE1-202ENST00000352393 SPZ1Q9BXG8 430 aa27.38■■□□□ 1.97
CPNE1-202ENST00000352393 NYXQ9GZU5 481 aa27.38■■□□□ 1.97
CPNE1-202ENST00000352393 ZC3H4Q9UPT8 1303 aaKnown RBP27.38■■□□□ 1.97
CPNE1-202ENST00000352393 KCNQ2O43526 872 aa27.38■■□□□ 1.97
CPNE1-202ENST00000352393 MTIF2P46199 727 aaKnown RBP27.38■■□□□ 1.97
CPNE1-202ENST00000352393 SLC20A2Q08357 652 aa27.38■■□□□ 1.97
CPNE1-202ENST00000352393 HPCAL4Q9UM19 191 aa27.38■■□□□ 1.97
CPNE1-202ENST00000352393 DDX60LQ5H9U9 1706 aaKnown RBP27.38■■□□□ 1.97
CPNE1-202ENST00000352393 FCER1AP12319 257 aa27.37■■□□□ 1.97
CPNE1-202ENST00000352393 VAV2P52735 878 aa27.37■■□□□ 1.97
CPNE1-202ENST00000352393 EEF2KMTQ96G04 330 aa27.37■■□□□ 1.97
CPNE1-202ENST00000352393 NOC4LQ9BVI4 516 aaKnown RBP27.37■■□□□ 1.97
CPNE1-202ENST00000352393 SNED1Q8TER0 1413 aa27.37■■□□□ 1.97
CPNE1-202ENST00000352393 CNTNAP4Q9C0A0 1308 aa27.37■■□□□ 1.97
CPNE1-202ENST00000352393 NONOQ15233 471 aaKnown RBP eCLIP27.37■■□□□ 1.97
CPNE1-202ENST00000352393 SLC44A5Q8NCS7 719 aa27.37■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 148.3 ms