RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 WRNIP1Q96S55 665 aa20.62■□□□□ 0.89
VIM-201ENST00000224237 WDR46O15213 610 aaKnown RBP20.61■□□□□ 0.89
VIM-201ENST00000224237 POLR2DO15514 142 aaKnown RBP20.61■□□□□ 0.89
VIM-201ENST00000224237 LONP1P36776 959 aaKnown RBP20.61■□□□□ 0.89
VIM-201ENST00000224237 PRPHP41219 470 aa20.61■□□□□ 0.89
VIM-201ENST00000224237 DGKZQ13574 1117 aa20.61■□□□□ 0.89
VIM-201ENST00000224237 PRKG1Q13976 671 aa20.61■□□□□ 0.89
VIM-201ENST00000224237 STX1AQ16623 288 aa20.61■□□□□ 0.89
VIM-201ENST00000224237 UBE2SQ16763 222 aa20.61■□□□□ 0.89
VIM-201ENST00000224237 FAM200AQ8TCP9 573 aa20.61■□□□□ 0.89
VIM-201ENST00000224237 SYMPKQ92797 1274 aaKnown RBP20.61■□□□□ 0.89
VIM-201ENST00000224237 HOOK1Q9UJC3 728 aaKnown RBP20.61■□□□□ 0.89
VIM-201ENST00000224237 GRIN3BO60391 1043 aa20.6■□□□□ 0.89
VIM-201ENST00000224237 NEMFO60524 1076 aa20.6■□□□□ 0.89
VIM-201ENST00000224237 TAL1P17542 331 aaPredicted RBP20.6■□□□□ 0.89
VIM-201ENST00000224237 LONRF3Q496Y0 759 aa20.6■□□□□ 0.89
VIM-201ENST00000224237 ANO6Q4KMQ2 910 aa20.6■□□□□ 0.89
VIM-201ENST00000224237 MCTP2Q6DN12 878 aa20.6■□□□□ 0.89
VIM-201ENST00000224237 DTHD1Q6ZMT9 781 aa20.6■□□□□ 0.89
VIM-201ENST00000224237 RANBP17Q9H2T7 1088 aaKnown RBP20.6■□□□□ 0.89
VIM-201ENST00000224237 AS3MTQ9HBK9 375 aa20.6■□□□□ 0.89
VIM-201ENST00000224237 USH1GQ495M9 461 aa20.6■□□□□ 0.89
VIM-201ENST00000224237 USP49Q70CQ1 688 aa20.6■□□□□ 0.89
VIM-201ENST00000224237 TEX2Q8IWB9 1127 aa20.6■□□□□ 0.89
VIM-201ENST00000224237 KIFC2Q96AC6 838 aa20.6■□□□□ 0.89
VIM-201ENST00000224237 CCDC34Q96HJ3 373 aa20.6■□□□□ 0.89
VIM-201ENST00000224237 EPSTI1Q96J88 318 aa20.6■□□□□ 0.89
VIM-201ENST00000224237 PYM1Q9BRP8 204 aaKnown RBP20.6■□□□□ 0.89
VIM-201ENST00000224237 TMEM60Q9H2L4 133 aa20.6■□□□□ 0.89
VIM-201ENST00000224237 PICK1Q9NRD5 415 aa20.6■□□□□ 0.89
VIM-201ENST00000224237 ZC3H4Q9UPT8 1303 aaKnown RBP20.59■□□□□ 0.89
VIM-201ENST00000224237 USP14P54578 494 aa20.59■□□□□ 0.89
VIM-201ENST00000224237 AP3B2Q13367 1082 aa20.59■□□□□ 0.89
VIM-201ENST00000224237 ZRSR1Q15695 479 aaKnown RBP20.59■□□□□ 0.89
VIM-201ENST00000224237 IL17AQ16552 155 aa20.59■□□□□ 0.89
VIM-201ENST00000224237 KANK3Q6NY19 840 aa20.59■□□□□ 0.89
VIM-201ENST00000224237 DCPSQ96C86 337 aaKnown RBP20.59■□□□□ 0.89
VIM-201ENST00000224237 ANO10Q9NW15 660 aa20.59■□□□□ 0.89
VIM-201ENST00000224237 GLTPD2A6NH11 291 aa20.58■□□□□ 0.89
VIM-201ENST00000224237 OR52Z1P0C646 297 aa20.58■□□□□ 0.89
VIM-201ENST00000224237 EPHX2P34913 555 aa20.58■□□□□ 0.89
VIM-201ENST00000224237 KLRG1Q96E93 195 aa20.58■□□□□ 0.89
VIM-201ENST00000224237 WDR18Q9BV38 432 aa20.58■□□□□ 0.89
VIM-201ENST00000224237 USP17L15C9J2P7 530 aa20.58■□□□□ 0.88
VIM-201ENST00000224237 USP17L13C9JLJ4 530 aa20.58■□□□□ 0.88
VIM-201ENST00000224237 USP17L11C9JVI0 530 aa20.58■□□□□ 0.88
VIM-201ENST00000224237 USP17L18D6R9N7 530 aa20.58■□□□□ 0.88
VIM-201ENST00000224237 USP17L22D6RA61 530 aa20.58■□□□□ 0.88
VIM-201ENST00000224237 USP17L17D6RBQ6 530 aa20.58■□□□□ 0.88
VIM-201ENST00000224237 USP17L19D6RCP7 530 aa20.58■□□□□ 0.88
VIM-201ENST00000224237 USP17L20D6RJB6 530 aa20.58■□□□□ 0.88
VIM-201ENST00000224237 TXLNAP40222 546 aa20.58■□□□□ 0.88
VIM-201ENST00000224237 USP17L24Q0WX57 530 aa20.58■□□□□ 0.88
VIM-201ENST00000224237 USP17L6PQ6QN14 398 aa20.58■□□□□ 0.88
VIM-201ENST00000224237 SULF1Q8IWU6 871 aa20.58■□□□□ 0.88
VIM-201ENST00000224237 PDILTQ8N807 584 aa20.58■□□□□ 0.88
VIM-201ENST00000224237 ERCC4Q92889 916 aaPredicted RBP20.58■□□□□ 0.88
VIM-201ENST00000224237 FBXO28Q9NVF7 368 aa20.58■□□□□ 0.88
VIM-201ENST00000224237 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.57■□□□□ 0.88
VIM-201ENST00000224237 MEIS2O14770 477 aa20.57■□□□□ 0.88
VIM-201ENST00000224237 CCDC173Q0VFZ6 552 aa20.57■□□□□ 0.88
VIM-201ENST00000224237 MTMR2Q13614 643 aa20.57■□□□□ 0.88
VIM-201ENST00000224237 PPP4R3AQ6IN85 833 aa20.57■□□□□ 0.88
VIM-201ENST00000224237 SAMD1Q6SPF0 538 aaPredicted RBP20.57■□□□□ 0.88
VIM-201ENST00000224237 NAP1L4Q99733 375 aaKnown RBP20.57■□□□□ 0.88
VIM-201ENST00000224237 DNAJC25Q9H1X3 360 aa20.57■□□□□ 0.88
VIM-201ENST00000224237 USP25Q9UHP3 1055 aa20.57■□□□□ 0.88
VIM-201ENST00000224237 ACTN4O43707 911 aaKnown RBP20.56■□□□□ 0.88
VIM-201ENST00000224237 PTPRAP18433 802 aa20.56■□□□□ 0.88
VIM-201ENST00000224237 NOL9Q5SY16 702 aaKnown RBP20.56■□□□□ 0.88
VIM-201ENST00000224237 KRT26Q7Z3Y9 468 aa20.56■□□□□ 0.88
VIM-201ENST00000224237 ZNF280CQ8ND82 737 aa20.56■□□□□ 0.88
VIM-201ENST00000224237 SERTAD1Q9UHV2 236 aa20.56■□□□□ 0.88
VIM-201ENST00000224237 TUBE1Q9UJT0 475 aa20.56■□□□□ 0.88
VIM-201ENST00000224237 GCFC2P16383 781 aaKnown RBP20.56■□□□□ 0.88
VIM-201ENST00000224237 ZNF165P49910 485 aa20.56■□□□□ 0.88
VIM-201ENST00000224237 BACE1P56817 501 aa20.56■□□□□ 0.88
VIM-201ENST00000224237 USP50Q70EL3 339 aaPredicted RBP20.56■□□□□ 0.88
VIM-201ENST00000224237 POTEDQ86YR6 584 aa20.56■□□□□ 0.88
VIM-201ENST00000224237 AK8Q96MA6 479 aa20.56■□□□□ 0.88
VIM-201ENST00000224237 SLF1Q9BQI6 1058 aa20.56■□□□□ 0.88
VIM-201ENST00000224237 ANO3Q9BYT9 981 aa20.56■□□□□ 0.88
VIM-201ENST00000224237 MYH7BA7E2Y1 1941 aa20.56■□□□□ 0.88
VIM-201ENST00000224237 A0A087X0B3 334 aa20.55■□□□□ 0.88
VIM-201ENST00000224237 POTECB2RU33 542 aa20.55■□□□□ 0.88
VIM-201ENST00000224237 PIK3CDO00329 1044 aa20.55■□□□□ 0.88
VIM-201ENST00000224237 FOSP01100 380 aaPredicted RBP20.55■□□□□ 0.88
VIM-201ENST00000224237 SPP2Q13103 211 aa20.55■□□□□ 0.88
VIM-201ENST00000224237 PNOCQ13519 176 aa20.55■□□□□ 0.88
VIM-201ENST00000224237 POSTNQ15063 836 aa20.55■□□□□ 0.88
VIM-201ENST00000224237 CCDC174Q6PII3 467 aa20.55■□□□□ 0.88
VIM-201ENST00000224237 CEP57L1Q8IYX8 460 aa20.55■□□□□ 0.88
VIM-201ENST00000224237 PRPF38AQ8NAV1 312 aaKnown RBP20.55■□□□□ 0.88
VIM-201ENST00000224237 DHX58Q96C10 678 aa20.55■□□□□ 0.88
VIM-201ENST00000224237 CBX8Q9HC52 389 aa20.55■□□□□ 0.88
VIM-201ENST00000224237 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.55■□□□□ 0.88
VIM-201ENST00000224237 SPDYE3A6NKU9 549 aa20.54■□□□□ 0.88
VIM-201ENST00000224237 EDIL3O43854 480 aa20.54■□□□□ 0.88
VIM-201ENST00000224237 USP2O75604 605 aaPredicted RBP20.54■□□□□ 0.88
VIM-201ENST00000224237 TDP2O95551 362 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms