RNA–Protein interactions for RNA: ENSMUST00000005841.15

Ctcf-201, Transcript of Transcriptional repressor CTCF, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ctcf, Length 3,782 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ctcf-201ENSMUST00000005841 Ddx23D3Z0M9 819 aaKnown RBP18.76■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Ces1hD3Z298 562 aa18.76■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Tcp1P11983 556 aaKnown RBP18.76■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Rad23bP54728 416 aa18.76■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Nr1d1Q3UV55 615 aa18.76■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Rhbdf1Q6PIX5 856 aa18.76■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Ubac1Q8VDI7 409 aa18.76■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Bub1bQ9Z1S0 1052 aa18.76■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Frmpd4A2AFR3 1320 aa18.76■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Nr5a1P33242 462 aa18.76■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Adam1aQ60813 791 aa18.76■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Ccdc134Q8C7V8 229 aa18.76■□□□□ 0.59
Ctcf-201ENSMUST00000005841 IntS13Q8QZV7 732 aa18.76■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Slc40a1Q9JHI9 570 aa18.76■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Psma7Q9Z2U0 248 aa18.76■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Zfy1P10925 782 aa18.76■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Lig1P37913 916 aa18.76■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Cnga2Q62398 664 aa18.76■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Gja3Q64448 417 aa18.76■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Pfkfb3A7UAK5 555 aa18.75■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Myo1fP70248 1099 aa18.75■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Rgs9bpQ148R9 237 aa18.75■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Agtpbp1Q641K1 1218 aa18.75■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Usp20Q8C6M1 916 aa18.75■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Chchd3Q9CRB9 227 aaKnown RBP18.75■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Rhobtb3Q9CTN4 611 aa18.75■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Stk11Q9WTK7 436 aa18.75■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Pitpnm2Q6ZPQ6 1335 aa18.75■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Cd44P15379 778 aa18.75■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Lig3P97386 1015 aa18.75■□□□□ 0.59
Ctcf-201ENSMUST00000005841 H6pdQ8CFX1 789 aa18.75■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Tnip1Q9WUU8 647 aa18.75■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Ccdc24E9PUW8 296 aa18.75■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Git1Q68FF6 770 aa18.75■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Smc6Q924W5 1097 aa18.75■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Vmn2r71L7N2D8 855 aa18.74■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Trappc3O55013 180 aa18.74■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Prl2c2P04095 224 aa18.74■□□□□ 0.59
Ctcf-201ENSMUST00000005841 AcrbpQ3V140 540 aa18.74■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Exoc3Q6KAR6 755 aa18.74■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Ccdc148Q6P5U8 527 aa18.74■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Krit1Q6S5J6 736 aa18.74■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Olfr118Q7TRJ6 321 aa18.74■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Prpf40aQ9R1C7 953 aaKnown RBP18.74■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Plcb1Q9Z1B3 1216 aa18.74■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Wdr72D3YYM4 1114 aa18.74■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Gm7361D3Z6R1 267 aa18.74■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Gtf2f1Q3THK3 508 aaKnown RBP18.74■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Cep70Q6IQY5 616 aa18.74■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Usp17leQ7M764 540 aa18.74■□□□□ 0.59
Ctcf-201ENSMUST00000005841 NkrfQ8BY02 690 aaKnown RBP18.74■□□□□ 0.59
Ctcf-201ENSMUST00000005841 PccaQ91ZA3 724 aa18.74■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Ndufab1Q9CR21 156 aa18.74■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Gm21663A0A0G2JE01 267 aa18.73■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Gm21680A0A0G2JGR8 267 aa18.73■□□□□ 0.59
Ctcf-201ENSMUST00000005841 5031410I06RikE9Q4E0 267 aa18.73■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Gm5862K7N5V5 267 aa18.73■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Gm10220K7N660 267 aa18.73■□□□□ 0.59
Ctcf-201ENSMUST00000005841 CltaO08585 235 aa18.73■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Scfd2Q8BTY8 684 aa18.73■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Lrrc4cQ8C031 640 aa18.73■□□□□ 0.59
Ctcf-201ENSMUST00000005841 HdlbpQ8VDJ3 1268 aaKnown RBP18.73■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Klhl10Q9D5V2 608 aa18.73■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Arhgap44Q5SSM3 814 aa18.73■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Ushbp1Q8R370 680 aa18.73■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Nop56Q9D6Z1 580 aaKnown RBP18.73■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Git2Q9JLQ2 708 aa18.73■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Gkap1Q9JMB0 366 aa18.73■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Entpd5Q9WUZ9 427 aa18.73■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Rexo2Q9D8S4 237 aa18.73■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Ddx20Q9JJY4 825 aaKnown RBP18.73■□□□□ 0.59
Ctcf-201ENSMUST00000005841 RelaQ04207 549 aa18.72■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Foxn3Q499D0 457 aa18.72■□□□□ 0.59
Ctcf-201ENSMUST00000005841 PRAG1Q571I4 1179 aa18.72■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Micall1Q8BGT6 870 aa18.72■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Mettl5Q8K1A0 209 aa18.72■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Slf1Q8R3P9 1054 aa18.72■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Net1Q9Z206 595 aa18.72■□□□□ 0.59
Ctcf-201ENSMUST00000005841 PnnO35691 725 aaKnown RBP18.72■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Slc4a4O88343 1079 aa18.72■□□□□ 0.59
Ctcf-201ENSMUST00000005841 MarcksP26645 309 aaKnown RBP18.72■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Cyfip2Q5SQX6 1253 aa18.72■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Zrsr2Q62377 462 aaKnown RBP18.72■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Ebag9Q9D0V7 213 aa18.72■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Gm45208A0A140LJ36 292 aa18.72■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Zbtb7aO88939 569 aaKnown RBP18.72■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Kcnma1Q08460 1209 aa18.72■□□□□ 0.59
Ctcf-201ENSMUST00000005841 ItpkaQ8R071 459 aa18.72■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Atp1a1Q8VDN2 1023 aaKnown RBP18.72■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Tnfaip8l3Q3TBL6 204 aa18.71■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Sec31aQ3UPL0 1230 aaKnown RBP18.71■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Foxd1Q61345 456 aa18.71■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Inpp4bQ6P1Y8 924 aa18.71■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Il17cQ8K4C5 194 aa18.71■□□□□ 0.59
Ctcf-201ENSMUST00000005841 GptQ8QZR5 496 aa18.71■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Dhx58Q99J87 678 aa18.71■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Tsc2Q61037 1814 aa18.71■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Zfpm1O35615 995 aa18.71■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Dnajc5P60904 198 aa18.71■□□□□ 0.59
Ctcf-201ENSMUST00000005841 Shc3Q61120 474 aa18.71■□□□□ 0.59
Retrieved 100 of 22,080 RNA–protein pairs in 44.3 ms