RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 MAGEA10P43363 369 aaPredicted RBP22.48■■□□□ 1.19
CCDC28A-203ENST00000617445 HAND2P61296 217 aa22.48■■□□□ 1.19
CCDC28A-203ENST00000617445 CWC27Q6UX04 472 aaKnown RBP22.48■■□□□ 1.19
CCDC28A-203ENST00000617445 SLC39A5Q6ZMH5 540 aa22.48■■□□□ 1.19
CCDC28A-203ENST00000617445 FAM184BQ9ULE4 1060 aa22.48■■□□□ 1.19
CCDC28A-203ENST00000617445 PRR12Q9ULL5 1215 aa22.48■■□□□ 1.19
CCDC28A-203ENST00000617445 ZNF536O15090 1300 aa22.48■■□□□ 1.19
CCDC28A-203ENST00000617445 DNAH12Q6ZR08 3092 aa22.47■■□□□ 1.19
CCDC28A-203ENST00000617445 SNAI1O95863 264 aaPredicted RBP22.47■■□□□ 1.19
CCDC28A-203ENST00000617445 TAL1P17542 331 aaPredicted RBP22.47■■□□□ 1.19
CCDC28A-203ENST00000617445 ATN1P54259 1190 aaPredicted RBP22.47■■□□□ 1.19
CCDC28A-203ENST00000617445 CCDC178Q5BJE1 867 aa22.47■■□□□ 1.19
CCDC28A-203ENST00000617445 C1orf53Q5VUE5 145 aa22.47■■□□□ 1.19
CCDC28A-203ENST00000617445 BTNL9Q6UXG8 535 aa22.47■■□□□ 1.19
CCDC28A-203ENST00000617445 ESR2Q92731 530 aa22.47■■□□□ 1.19
CCDC28A-203ENST00000617445 TMEM47Q9BQJ4 181 aa22.47■■□□□ 1.19
CCDC28A-203ENST00000617445 ABHD16BQ9H3Z7 469 aa22.47■■□□□ 1.19
CCDC28A-203ENST00000617445 RNF146Q9NTX7 359 aa22.47■■□□□ 1.19
CCDC28A-203ENST00000617445 PNMA2Q9UL42 364 aa22.47■■□□□ 1.19
CCDC28A-203ENST00000617445 MYCNP04198 464 aaPredicted RBP22.46■■□□□ 1.19
CCDC28A-203ENST00000617445 RTP1P59025 263 aa22.46■■□□□ 1.19
CCDC28A-203ENST00000617445 SNX17Q15036 470 aa22.46■■□□□ 1.19
CCDC28A-203ENST00000617445 CCDC96Q2M329 555 aa22.46■■□□□ 1.19
CCDC28A-203ENST00000617445 AGBL1Q96MI9 1066 aa22.46■■□□□ 1.19
CCDC28A-203ENST00000617445 TRERF1Q96PN7 1200 aa22.46■■□□□ 1.19
CCDC28A-203ENST00000617445 TSEN34Q9BSV6 310 aaKnown RBP22.46■■□□□ 1.19
CCDC28A-203ENST00000617445 DSCC1Q9BVC3 393 aa22.46■■□□□ 1.19
CCDC28A-203ENST00000617445 HOMER2Q9NSB8 354 aa22.46■■□□□ 1.19
CCDC28A-203ENST00000617445 PRKAG2Q9UGJ0 569 aa22.46■■□□□ 1.19
CCDC28A-203ENST00000617445 CTNNA3Q9UI47 895 aa22.46■■□□□ 1.19
CCDC28A-203ENST00000617445 PHF24Q9UPV7 400 aa22.46■■□□□ 1.19
CCDC28A-203ENST00000617445 POTEB2H3BUK9 544 aa22.45■■□□□ 1.18
CCDC28A-203ENST00000617445 ADCYAP1R1P41586 468 aa22.45■■□□□ 1.18
CCDC28A-203ENST00000617445 ACVR2BQ13705 512 aa22.45■■□□□ 1.18
CCDC28A-203ENST00000617445 UBE2OQ9C0C9 1292 aaKnown RBP22.45■■□□□ 1.18
CCDC28A-203ENST00000617445 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.45■■□□□ 1.18
CCDC28A-203ENST00000617445 MCM3APO60318 1980 aa22.45■■□□□ 1.18
CCDC28A-203ENST00000617445 DUSP11O75319 330 aaKnown RBP22.44■■□□□ 1.18
CCDC28A-203ENST00000617445 ICAM1P05362 532 aa22.44■■□□□ 1.18
CCDC28A-203ENST00000617445 ALAS1P13196 640 aa22.44■■□□□ 1.18
CCDC28A-203ENST00000617445 DGKHQ86XP1 1220 aa22.44■■□□□ 1.18
CCDC28A-203ENST00000617445 TBC1D10CQ8IV04 446 aa22.44■■□□□ 1.18
CCDC28A-203ENST00000617445 FAM133AQ8N9E0 248 aa22.44■■□□□ 1.18
CCDC28A-203ENST00000617445 CHMP4CQ96CF2 233 aa22.44■■□□□ 1.18
CCDC28A-203ENST00000617445 LBHD1Q9BQE6 289 aaPredicted RBP22.44■■□□□ 1.18
CCDC28A-203ENST00000617445 A1CFQ9NQ94 594 aaKnown RBP22.44■■□□□ 1.18
CCDC28A-203ENST00000617445 MTMR7Q9Y216 660 aa22.44■■□□□ 1.18
CCDC28A-203ENST00000617445 ASB14A6NK59 587 aa22.43■■□□□ 1.18
CCDC28A-203ENST00000617445 PGK1P00558 417 aa22.43■■□□□ 1.18
CCDC28A-203ENST00000617445 SYDE2Q5VT97 1194 aa22.43■■□□□ 1.18
CCDC28A-203ENST00000617445 CCDC174Q6PII3 467 aa22.43■■□□□ 1.18
CCDC28A-203ENST00000617445 ARMCX2Q7L311 632 aa22.43■■□□□ 1.18
CCDC28A-203ENST00000617445 IQCA1Q86XH1 822 aa22.43■■□□□ 1.18
CCDC28A-203ENST00000617445 TDHQ8IZJ6 230 aa22.43■■□□□ 1.18
CCDC28A-203ENST00000617445 FGD4Q96M96 766 aa22.43■■□□□ 1.18
CCDC28A-203ENST00000617445 RANBP17Q9H2T7 1088 aaKnown RBP22.43■■□□□ 1.18
CCDC28A-203ENST00000617445 ZHX1Q9UKY1 873 aaPredicted RBP22.43■■□□□ 1.18
CCDC28A-203ENST00000617445 CCPG1Q9ULG6 757 aa22.43■■□□□ 1.18
CCDC28A-203ENST00000617445 ATP11BQ9Y2G3 1177 aa22.43■■□□□ 1.18
CCDC28A-203ENST00000617445 LAMA4Q16363 1823 aa22.43■■□□□ 1.18
CCDC28A-203ENST00000617445 ADAMTS4O75173 837 aa22.42■■□□□ 1.18
CCDC28A-203ENST00000617445 PDHBP11177 359 aa22.42■■□□□ 1.18
CCDC28A-203ENST00000617445 IMMTQ16891 758 aaKnown RBP22.42■■□□□ 1.18
CCDC28A-203ENST00000617445 SPC25Q9HBM1 224 aa22.42■■□□□ 1.18
CCDC28A-203ENST00000617445 MOXD2PA6NHM9 499 aa22.41■■□□□ 1.18
CCDC28A-203ENST00000617445 SNHG28P0DPA3 235 aa22.41■■□□□ 1.18
CCDC28A-203ENST00000617445 LRIT3Q3SXY7 679 aa22.41■■□□□ 1.18
CCDC28A-203ENST00000617445 TTBK2Q6IQ55 1244 aa22.41■■□□□ 1.18
CCDC28A-203ENST00000617445 GPR153Q6NV75 609 aa22.41■■□□□ 1.18
CCDC28A-203ENST00000617445 CCDC144CPQ8IYA2 1237 aa22.41■■□□□ 1.18
CCDC28A-203ENST00000617445 KLHDC9Q8NEP7 349 aa22.41■■□□□ 1.18
CCDC28A-203ENST00000617445 NUP133Q8WUM0 1156 aa22.41■■□□□ 1.18
CCDC28A-203ENST00000617445 FERMT2Q96AC1 680 aa22.41■■□□□ 1.18
CCDC28A-203ENST00000617445 CST5P28325 142 aaPredicted RBP22.4■■□□□ 1.18
CCDC28A-203ENST00000617445 CNTN2Q02246 1040 aa22.4■■□□□ 1.18
CCDC28A-203ENST00000617445 ZNF543Q08ER8 600 aa22.4■■□□□ 1.18
CCDC28A-203ENST00000617445 CCDC144BQ3MJ40 725 aa22.4■■□□□ 1.18
CCDC28A-203ENST00000617445 GPATCH4Q5T3I0 446 aaKnown RBP22.4■■□□□ 1.18
CCDC28A-203ENST00000617445 TTC22Q5TAA0 569 aa22.4■■□□□ 1.18
CCDC28A-203ENST00000617445 PCSK9Q8NBP7 692 aaKnown RBP22.4■■□□□ 1.18
CCDC28A-203ENST00000617445 CNNM2Q9H8M5 875 aa22.4■■□□□ 1.18
CCDC28A-203ENST00000617445 CYP39A1Q9NYL5 469 aa22.4■■□□□ 1.18
CCDC28A-203ENST00000617445 SZT2Q5T011 3432 aa22.4■■□□□ 1.18
CCDC28A-203ENST00000617445 NEDD4P46934 1319 aa22.39■■□□□ 1.18
CCDC28A-203ENST00000617445 SYNRGQ9UMZ2 1314 aa22.39■■□□□ 1.18
CCDC28A-203ENST00000617445 LOC102724159A0A0B4J2E5 919 aa22.39■■□□□ 1.17
CCDC28A-203ENST00000617445 PDE4AP27815 886 aa22.39■■□□□ 1.17
CCDC28A-203ENST00000617445 SLC16A2P36021 539 aa22.39■■□□□ 1.17
CCDC28A-203ENST00000617445 SNAP25P60880 206 aa22.39■■□□□ 1.17
CCDC28A-203ENST00000617445 MDM2Q00987 491 aaPredicted RBP22.39■■□□□ 1.17
CCDC28A-203ENST00000617445 PWP2Q15269 919 aaKnown RBP22.39■■□□□ 1.17
CCDC28A-203ENST00000617445 TRIM60Q495X7 471 aa22.39■■□□□ 1.17
CCDC28A-203ENST00000617445 RASGRP2Q7LDG7 609 aa22.39■■□□□ 1.17
CCDC28A-203ENST00000617445 RUFY2Q8WXA3 655 aa22.39■■□□□ 1.17
CCDC28A-203ENST00000617445 ANKS1AQ92625 1134 aa22.39■■□□□ 1.17
CCDC28A-203ENST00000617445 KRT23Q9C075 422 aa22.39■■□□□ 1.17
CCDC28A-203ENST00000617445 GPCPD1Q9NPB8 672 aa22.39■■□□□ 1.17
CCDC28A-203ENST00000617445 LAMA3Q16787 3333 aa22.39■■□□□ 1.17
CCDC28A-203ENST00000617445 FRMPD2Q68DX3 1309 aaPredicted RBP22.38■■□□□ 1.17
CCDC28A-203ENST00000617445 RAD50Q92878 1312 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms