RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 CYP2C19P33261 490 aa23.59■■□□□ 1.37
SS18-218ENST00000581021 IFIT1BQ5T764 474 aaKnown RBP23.59■■□□□ 1.37
SS18-218ENST00000581021 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.59■■□□□ 1.37
SS18-218ENST00000581021 TRPV1Q8NER1 839 aa23.59■■□□□ 1.37
SS18-218ENST00000581021 HOMER2Q9NSB8 354 aa23.59■■□□□ 1.37
SS18-218ENST00000581021 CTDP1Q9Y5B0 961 aaPredicted RBP23.59■■□□□ 1.37
SS18-218ENST00000581021 RPTORQ8N122 1335 aa23.59■■□□□ 1.37
SS18-218ENST00000581021 FDX1P10109 184 aa23.58■■□□□ 1.37
SS18-218ENST00000581021 ZNF792Q3KQV3 632 aa23.58■■□□□ 1.37
SS18-218ENST00000581021 CASC1Q6TDU7 716 aa23.58■■□□□ 1.37
SS18-218ENST00000581021 MAML3Q96JK9 1138 aa23.58■■□□□ 1.37
SS18-218ENST00000581021 ZNFX1Q9P2E3 1918 aaKnown RBP23.58■■□□□ 1.37
SS18-218ENST00000581021 SMCHD1A6NHR9 2005 aa23.57■■□□□ 1.36
SS18-218ENST00000581021 DNAJC25-GNG10A0A024R161 153 aa23.57■■□□□ 1.36
SS18-218ENST00000581021 IFIT3O14879 490 aaKnown RBP23.57■■□□□ 1.36
SS18-218ENST00000581021 KCTD2Q14681 263 aa23.57■■□□□ 1.36
SS18-218ENST00000581021 OLFML2BQ68BL8 750 aa23.57■■□□□ 1.36
SS18-218ENST00000581021 RASEFQ8IZ41 740 aa23.57■■□□□ 1.36
SS18-218ENST00000581021 IGDCC4Q8TDY8 1250 aa23.57■■□□□ 1.36
SS18-218ENST00000581021 FGD4Q96M96 766 aa23.57■■□□□ 1.36
SS18-218ENST00000581021 UBA5Q9GZZ9 404 aa23.57■■□□□ 1.36
SS18-218ENST00000581021 CRISPLD2Q9H0B8 497 aa23.57■■□□□ 1.36
SS18-218ENST00000581021 HMX1Q9NP08 348 aaPredicted RBP23.57■■□□□ 1.36
SS18-218ENST00000581021 RNF146Q9NTX7 359 aa23.57■■□□□ 1.36
SS18-218ENST00000581021 SGPL1O95470 568 aa23.56■■□□□ 1.36
SS18-218ENST00000581021 ICAM1P05362 532 aa23.56■■□□□ 1.36
SS18-218ENST00000581021 MUM1L1Q5H9M0 696 aa23.56■■□□□ 1.36
SS18-218ENST00000581021 UBE2Q1Q7Z7E8 422 aa23.56■■□□□ 1.36
SS18-218ENST00000581021 STAG2Q8N3U4 1231 aa23.56■■□□□ 1.36
SS18-218ENST00000581021 CHST13Q8NET6 341 aa23.56■■□□□ 1.36
SS18-218ENST00000581021 PLXNA1Q9UIW2 1896 aa23.56■■□□□ 1.36
SS18-218ENST00000581021 SLC35G1Q2M3R5 365 aa23.55■■□□□ 1.36
SS18-218ENST00000581021 GPATCH4Q5T3I0 446 aaKnown RBP23.55■■□□□ 1.36
SS18-218ENST00000581021 MFSD14CQ5VZR4 134 aa23.55■■□□□ 1.36
SS18-218ENST00000581021 CCPG1Q9ULG6 757 aa23.55■■□□□ 1.36
SS18-218ENST00000581021 PRC1O43663 620 aa23.54■■□□□ 1.36
SS18-218ENST00000581021 ALAS1P13196 640 aa23.54■■□□□ 1.36
SS18-218ENST00000581021 CYBAP13498 195 aa23.54■■□□□ 1.36
SS18-218ENST00000581021 ASPRV1Q53RT3 343 aa23.54■■□□□ 1.36
SS18-218ENST00000581021 TMEM67Q5HYA8 995 aa23.54■■□□□ 1.36
SS18-218ENST00000581021 TRERF1Q96PN7 1200 aa23.54■■□□□ 1.36
SS18-218ENST00000581021 ACAD9Q9H845 621 aa23.54■■□□□ 1.36
SS18-218ENST00000581021 LY9Q9HBG7 655 aa23.54■■□□□ 1.36
SS18-218ENST00000581021 A1CFQ9NQ94 594 aaKnown RBP23.54■■□□□ 1.36
SS18-218ENST00000581021 PARP1P09874 1014 aaKnown RBP23.53■■□□□ 1.36
SS18-218ENST00000581021 WTAPQ15007 396 aa23.53■■□□□ 1.36
SS18-218ENST00000581021 ADCK5Q3MIX3 580 aa23.53■■□□□ 1.36
SS18-218ENST00000581021 PRAMEF19Q5SWL8 479 aa23.53■■□□□ 1.36
SS18-218ENST00000581021 FBXO40Q9UH90 709 aa23.53■■□□□ 1.36
SS18-218ENST00000581021 MAD2L2Q9UI95 211 aa23.53■■□□□ 1.36
SS18-218ENST00000581021 SH2B2O14492 632 aaPredicted RBP23.52■■□□□ 1.36
SS18-218ENST00000581021 MNX1P50219 401 aaPredicted RBP23.52■■□□□ 1.36
SS18-218ENST00000581021 TROAPQ12815 778 aa23.52■■□□□ 1.36
SS18-218ENST00000581021 LHX8Q68G74 356 aa23.52■■□□□ 1.36
SS18-218ENST00000581021 ADGRF4Q8IZF3 695 aa23.52■■□□□ 1.36
SS18-218ENST00000581021 ANKRD35Q8N283 1001 aa23.52■■□□□ 1.36
SS18-218ENST00000581021 DIS3Q9Y2L1 958 aaKnown RBP23.52■■□□□ 1.36
SS18-218ENST00000581021 ASTN1O14525 1302 aa23.52■■□□□ 1.36
SS18-218ENST00000581021 PDE4DIPQ5VU43 2346 aa23.51■■□□□ 1.35
SS18-218ENST00000581021 LCTP09848 1927 aa23.51■■□□□ 1.35
SS18-218ENST00000581021 PALM3A6NDB9 673 aaPredicted RBP23.51■■□□□ 1.35
SS18-218ENST00000581021 NFIBO00712 420 aa23.51■■□□□ 1.35
SS18-218ENST00000581021 CNTN2Q02246 1040 aa23.51■■□□□ 1.35
SS18-218ENST00000581021 GRM4Q14833 912 aa23.51■■□□□ 1.35
SS18-218ENST00000581021 TKFCQ3LXA3 575 aa23.51■■□□□ 1.35
SS18-218ENST00000581021 CLEC4DQ8WXI8 215 aa23.51■■□□□ 1.35
SS18-218ENST00000581021 KCNB2Q92953 911 aa23.51■■□□□ 1.35
SS18-218ENST00000581021 DDX11Q96FC9 970 aa23.51■■□□□ 1.35
SS18-218ENST00000581021 TINF2Q9BSI4 451 aa23.51■■□□□ 1.35
SS18-218ENST00000581021 LRRC2Q9BYS8 371 aa23.51■■□□□ 1.35
SS18-218ENST00000581021 JMJD4Q9H9V9 463 aa23.51■■□□□ 1.35
SS18-218ENST00000581021 SLC5A4Q9NY91 659 aa23.51■■□□□ 1.35
SS18-218ENST00000581021 FRMPD3Q5JV73 1810 aa23.5■■□□□ 1.35
SS18-218ENST00000581021 MCM5P33992 734 aa23.5■■□□□ 1.35
SS18-218ENST00000581021 SART3Q15020 963 aaKnown RBP23.5■■□□□ 1.35
SS18-218ENST00000581021 CDC37Q16543 378 aaPredicted RBP23.5■■□□□ 1.35
SS18-218ENST00000581021 TSGA10IPQ3SY00 556 aa23.5■■□□□ 1.35
SS18-218ENST00000581021 FAM133AQ8N9E0 248 aa23.5■■□□□ 1.35
SS18-218ENST00000581021 DIS3LQ8TF46 1054 aaKnown RBP23.5■■□□□ 1.35
SS18-218ENST00000581021 MYL10Q9BUA6 226 aa23.5■■□□□ 1.35
SS18-218ENST00000581021 DDX49Q9Y6V7 483 aaKnown RBP23.5■■□□□ 1.35
SS18-218ENST00000581021 WDR19Q8NEZ3 1342 aa23.5■■□□□ 1.35
SS18-218ENST00000581021 ERICH2A1L162 156 aa23.49■■□□□ 1.35
SS18-218ENST00000581021 TFRCP02786 760 aaKnown RBP23.49■■□□□ 1.35
SS18-218ENST00000581021 RNF20Q5VTR2 975 aa23.49■■□□□ 1.35
SS18-218ENST00000581021 TCEANC2Q96MN5 208 aa23.49■■□□□ 1.35
SS18-218ENST00000581021 PURBQ96QR8 312 aaKnown RBP23.49■■□□□ 1.35
SS18-218ENST00000581021 CYP39A1Q9NYL5 469 aa23.49■■□□□ 1.35
SS18-218ENST00000581021 OGDHLQ9ULD0 1010 aa23.49■■□□□ 1.35
SS18-218ENST00000581021 SOWAHBA6NEL2 793 aa23.48■■□□□ 1.35
SS18-218ENST00000581021 KLRF2D3W0D1 207 aa23.48■■□□□ 1.35
SS18-218ENST00000581021 FARP2O94887 1054 aaPredicted RBP23.48■■□□□ 1.35
SS18-218ENST00000581021 SNAI1O95863 264 aaPredicted RBP23.48■■□□□ 1.35
SS18-218ENST00000581021 HSPA4P34932 840 aa23.48■■□□□ 1.35
SS18-218ENST00000581021 QRICH1Q2TAL8 776 aa23.48■■□□□ 1.35
SS18-218ENST00000581021 PPP1R11O60927 126 aaPredicted RBP23.47■■□□□ 1.35
SS18-218ENST00000581021 EXOSC10Q01780 885 aaKnown RBP23.47■■□□□ 1.35
SS18-218ENST00000581021 USH1GQ495M9 461 aa23.47■■□□□ 1.35
SS18-218ENST00000581021 MAMDC4Q6UXC1 1216 aa23.47■■□□□ 1.35
SS18-218ENST00000581021 NSMFQ6X4W1 530 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 871.7 ms