RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 GPR101Q96P66 508 aaPredicted RBP25.66■■□□□ 1.7
VPS53-211ENST00000571805 NUP88Q99567 741 aaPredicted RBP25.66■■□□□ 1.7
VPS53-211ENST00000571805 LZTS2Q9BRK4 669 aa25.66■■□□□ 1.7
VPS53-211ENST00000571805 MTMR7Q9Y216 660 aa25.66■■□□□ 1.7
VPS53-211ENST00000571805 SEC31AO94979 1220 aaKnown RBP25.65■■□□□ 1.7
VPS53-211ENST00000571805 GOLGA8HP0CJ92 632 aa25.65■■□□□ 1.7
VPS53-211ENST00000571805 GOLGA1Q92805 767 aa25.65■■□□□ 1.7
VPS53-211ENST00000571805 TAF1LQ8IZX4 1826 aa25.65■■□□□ 1.7
VPS53-211ENST00000571805 ATP8B1O43520 1251 aa25.64■■□□□ 1.7
VPS53-211ENST00000571805 ZNF569Q5MCW4 686 aa25.64■■□□□ 1.7
VPS53-211ENST00000571805 CYP26C1Q6V0L0 522 aa25.64■■□□□ 1.7
VPS53-211ENST00000571805 ZMYND12Q9H0C1 365 aa25.64■■□□□ 1.7
VPS53-211ENST00000571805 KLRF2D3W0D1 207 aa25.64■■□□□ 1.7
VPS53-211ENST00000571805 RHOBTB3O94955 611 aa25.64■■□□□ 1.7
VPS53-211ENST00000571805 ABL1P00519 1130 aa25.64■■□□□ 1.7
VPS53-211ENST00000571805 UBXN1Q04323 297 aa25.64■■□□□ 1.7
VPS53-211ENST00000571805 CC2D1AQ6P1N0 951 aaPredicted RBP25.64■■□□□ 1.7
VPS53-211ENST00000571805 CREBRFQ8IUR6 639 aa25.64■■□□□ 1.7
VPS53-211ENST00000571805 SPZ1Q9BXG8 430 aa25.64■■□□□ 1.7
VPS53-211ENST00000571805 PARD6BQ9BYG5 372 aa25.64■■□□□ 1.7
VPS53-211ENST00000571805 KRT9P35527 623 aa25.63■■□□□ 1.69
VPS53-211ENST00000571805 PIP4K2BP78356 416 aa25.63■■□□□ 1.69
VPS53-211ENST00000571805 GIMAP8Q8ND71 665 aaPredicted RBP25.63■■□□□ 1.69
VPS53-211ENST00000571805 PLIN2Q99541 437 aa25.63■■□□□ 1.69
VPS53-211ENST00000571805 CDC23Q9UJX2 597 aa25.63■■□□□ 1.69
VPS53-211ENST00000571805 MYH1P12882 1939 aa25.63■■□□□ 1.69
VPS53-211ENST00000571805 SNED1Q8TER0 1413 aa25.63■■□□□ 1.69
VPS53-211ENST00000571805 SEMA3FQ13275 785 aa25.63■■□□□ 1.69
VPS53-211ENST00000571805 ZNF771Q7L3S4 317 aaPredicted RBP25.63■■□□□ 1.69
VPS53-211ENST00000571805 SRGAP1Q7Z6B7 1085 aa25.63■■□□□ 1.69
VPS53-211ENST00000571805 RASSF8Q8NHQ8 419 aa25.63■■□□□ 1.69
VPS53-211ENST00000571805 CPVLQ9H3G5 476 aa25.63■■□□□ 1.69
VPS53-211ENST00000571805 NHSQ6T4R5 1651 aa25.63■■□□□ 1.69
VPS53-211ENST00000571805 ARHGAP25P42331 645 aa25.62■■□□□ 1.69
VPS53-211ENST00000571805 CDK8P49336 464 aa25.62■■□□□ 1.69
VPS53-211ENST00000571805 FLT1P17948 1338 aa25.62■■□□□ 1.69
VPS53-211ENST00000571805 TBC1D8O95759 1140 aa25.62■■□□□ 1.69
VPS53-211ENST00000571805 RFC4P35249 363 aa25.62■■□□□ 1.69
VPS53-211ENST00000571805 C16orf86Q6ZW13 317 aa25.62■■□□□ 1.69
VPS53-211ENST00000571805 MB21D1Q8N884 522 aa25.62■■□□□ 1.69
VPS53-211ENST00000571805 ZNF507Q8TCN5 953 aa25.62■■□□□ 1.69
VPS53-211ENST00000571805 THAP9Q9H5L6 903 aa25.62■■□□□ 1.69
VPS53-211ENST00000571805 DDX60LQ5H9U9 1706 aaKnown RBP25.62■■□□□ 1.69
VPS53-211ENST00000571805 EEF1GP26641 437 aaKnown RBP25.61■■□□□ 1.69
VPS53-211ENST00000571805 BTDP43251 543 aa25.61■■□□□ 1.69
VPS53-211ENST00000571805 SLC35F6Q8N357 371 aa25.61■■□□□ 1.69
VPS53-211ENST00000571805 NGLY1Q96IV0 654 aa25.61■■□□□ 1.69
VPS53-211ENST00000571805 C8orf37Q96NL8 207 aa25.61■■□□□ 1.69
VPS53-211ENST00000571805 ZNF287Q9HBT7 754 aa25.61■■□□□ 1.69
VPS53-211ENST00000571805 GPR75-ASB3A0A0A6YYF3 556 aa25.61■■□□□ 1.69
VPS53-211ENST00000571805 LGALS16A8MUM7 142 aa25.61■■□□□ 1.69
VPS53-211ENST00000571805 GPSM2P81274 684 aa25.61■■□□□ 1.69
VPS53-211ENST00000571805 TUBB2AQ13885 445 aa25.61■■□□□ 1.69
VPS53-211ENST00000571805 NEDD1Q8NHV4 660 aa25.61■■□□□ 1.69
VPS53-211ENST00000571805 EYA3Q99504 573 aa25.61■■□□□ 1.69
VPS53-211ENST00000571805 TUBB2BQ9BVA1 445 aa25.61■■□□□ 1.69
VPS53-211ENST00000571805 A0A1W2PQC6 194 aa25.6■■□□□ 1.69
VPS53-211ENST00000571805 SASH3O75995 380 aa25.6■■□□□ 1.69
VPS53-211ENST00000571805 CHMP4BP1P59074 171 aa25.6■■□□□ 1.69
VPS53-211ENST00000571805 TTI2Q6NXR4 508 aa25.6■■□□□ 1.69
VPS53-211ENST00000571805 AK8Q96MA6 479 aa25.6■■□□□ 1.69
VPS53-211ENST00000571805 CHP1Q99653 195 aa25.6■■□□□ 1.69
VPS53-211ENST00000571805 CD209Q9NNX6 404 aa25.6■■□□□ 1.69
VPS53-211ENST00000571805 TTC26A0AVF1 554 aa25.6■■□□□ 1.69
VPS53-211ENST00000571805 TRAPPC3LQ5T215 181 aa25.6■■□□□ 1.69
VPS53-211ENST00000571805 FAM182BQ5T319 152 aa25.6■■□□□ 1.69
VPS53-211ENST00000571805 KRT25Q7Z3Z0 450 aa25.6■■□□□ 1.69
VPS53-211ENST00000571805 CNBD1Q8NA66 436 aa25.6■■□□□ 1.69
VPS53-211ENST00000571805 UBXN6Q9BZV1 441 aa25.6■■□□□ 1.69
VPS53-211ENST00000571805 CUEDC2Q9H467 287 aa25.6■■□□□ 1.69
VPS53-211ENST00000571805 LY75O60449 1722 aa25.59■■□□□ 1.69
VPS53-211ENST00000571805 CTAGE9A4FU28 777 aa25.59■■□□□ 1.69
VPS53-211ENST00000571805 NAPAP54920 295 aa25.59■■□□□ 1.69
VPS53-211ENST00000571805 CABP7Q86V35 215 aa25.59■■□□□ 1.69
VPS53-211ENST00000571805 CERS3Q8IU89 383 aa25.59■■□□□ 1.69
VPS53-211ENST00000571805 SLF1Q9BQI6 1058 aa25.59■■□□□ 1.69
VPS53-211ENST00000571805 PSMA7O14818 248 aa25.59■■□□□ 1.69
VPS53-211ENST00000571805 OR52Z1P0C646 297 aa25.59■■□□□ 1.69
VPS53-211ENST00000571805 PLCG1P19174 1290 aa25.59■■□□□ 1.69
VPS53-211ENST00000571805 STIM1Q13586 685 aa25.59■■□□□ 1.69
VPS53-211ENST00000571805 TXNRD1Q16881 649 aa25.59■■□□□ 1.69
VPS53-211ENST00000571805 KIF4BQ2VIQ3 1234 aa25.59■■□□□ 1.69
VPS53-211ENST00000571805 CEP112Q8N8E3 955 aa25.59■■□□□ 1.69
VPS53-211ENST00000571805 MAGEF1Q9HAY2 307 aa25.59■■□□□ 1.69
VPS53-211ENST00000571805 SMCO2A6NFE2 343 aa25.58■■□□□ 1.69
VPS53-211ENST00000571805 NONOQ15233 471 aaKnown RBP eCLIP25.58■■□□□ 1.69
VPS53-211ENST00000571805 USP17L2Q6R6M4 530 aa25.58■■□□□ 1.69
VPS53-211ENST00000571805 DNAJC7Q99615 494 aa25.58■■□□□ 1.69
VPS53-211ENST00000571805 DUSP9Q99956 384 aaKnown RBP25.58■■□□□ 1.69
VPS53-211ENST00000571805 ZSWIM4Q9H7M6 989 aa25.58■■□□□ 1.69
VPS53-211ENST00000571805 MYO1AQ9UBC5 1043 aa25.58■■□□□ 1.69
VPS53-211ENST00000571805 REXO2Q9Y3B8 237 aaKnown RBP25.58■■□□□ 1.69
VPS53-211ENST00000571805 FAM193AP78312 1265 aa25.58■■□□□ 1.68
VPS53-211ENST00000571805 LETM2Q2VYF4 491 aa25.58■■□□□ 1.68
VPS53-211ENST00000571805 TEX11Q8IYF3 940 aa25.58■■□□□ 1.68
VPS53-211ENST00000571805 OR8K1Q8NGG5 319 aa25.58■■□□□ 1.68
VPS53-211ENST00000571805 DHTKD1Q96HY7 919 aaPredicted RBP25.58■■□□□ 1.68
VPS53-211ENST00000571805 TRIM47Q96LD4 638 aa25.58■■□□□ 1.68
VPS53-211ENST00000571805 PUF60Q9UHX1 559 aaKnown RBP25.58■■□□□ 1.68
VPS53-211ENST00000571805 CCNT1O60563 726 aaKnown RBP25.57■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms