RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 PCSK9Q8NBP7 692 aaKnown RBP15.43■□□□□ 0.06
SF3B3-202ENST00000562722 KLHDC9Q8NEP7 349 aa15.43■□□□□ 0.06
SF3B3-202ENST00000562722 NEDD1Q8NHV4 660 aa15.43■□□□□ 0.06
SF3B3-202ENST00000562722 ABHD16BQ9H3Z7 469 aa15.43■□□□□ 0.06
SF3B3-202ENST00000562722 ZBTB47Q9UFB7 747 aaPredicted RBP15.43■□□□□ 0.06
SF3B3-202ENST00000562722 PLIN4Q96Q06 1357 aa15.42■□□□□ 0.06
SF3B3-202ENST00000562722 FAAP100Q0VG06 881 aa15.42■□□□□ 0.06
SF3B3-202ENST00000562722 CCDC144BQ3MJ40 725 aa15.42■□□□□ 0.06
SF3B3-202ENST00000562722 ANKRD33Q7Z3H0 272 aa15.42■□□□□ 0.06
SF3B3-202ENST00000562722 MAFAQ8NHW3 353 aaPredicted RBP15.42■□□□□ 0.06
SF3B3-202ENST00000562722 MYLIPQ8WY64 445 aa15.42■□□□□ 0.06
SF3B3-202ENST00000562722 TOX2Q96NM4 488 aa15.42■□□□□ 0.06
SF3B3-202ENST00000562722 ACAD9Q9H845 621 aa15.42■□□□□ 0.06
SF3B3-202ENST00000562722 STX8Q9UNK0 236 aa15.42■□□□□ 0.06
SF3B3-202ENST00000562722 SMCHD1A6NHR9 2005 aa15.42■□□□□ 0.06
SF3B3-202ENST00000562722 MROH7Q68CQ1 1323 aa15.42■□□□□ 0.06
SF3B3-202ENST00000562722 TSPY2A6NKD2 308 aa15.41■□□□□ 0.06
SF3B3-202ENST00000562722 ASGR1P07306 291 aa15.41■□□□□ 0.06
SF3B3-202ENST00000562722 FDX1P10109 184 aa15.41■□□□□ 0.06
SF3B3-202ENST00000562722 FOSL2P15408 326 aa15.41■□□□□ 0.06
SF3B3-202ENST00000562722 MCCP23508 829 aa15.41■□□□□ 0.06
SF3B3-202ENST00000562722 IRX5P78411 483 aaPredicted RBP15.41■□□□□ 0.06
SF3B3-202ENST00000562722 CNTN2Q02246 1040 aa15.41■□□□□ 0.06
SF3B3-202ENST00000562722 GNASQ5JWF2 1037 aa15.41■□□□□ 0.06
SF3B3-202ENST00000562722 PPP4R3BQ5MIZ7 849 aa15.41■□□□□ 0.06
SF3B3-202ENST00000562722 ZMYM1Q5SVZ6 1142 aa15.41■□□□□ 0.06
SF3B3-202ENST00000562722 FAM160B2Q86V87 743 aa15.41■□□□□ 0.06
SF3B3-202ENST00000562722 CCDC144CPQ8IYA2 1237 aa15.41■□□□□ 0.06
SF3B3-202ENST00000562722 PI4K2BQ8TCG2 481 aa15.41■□□□□ 0.06
SF3B3-202ENST00000562722 OTUD7AQ8TE49 926 aaPredicted RBP15.41■□□□□ 0.06
SF3B3-202ENST00000562722 CHURC1Q8WUH1 139 aa15.41■□□□□ 0.06
SF3B3-202ENST00000562722 TTYH1Q9H313 450 aaPredicted RBP15.41■□□□□ 0.06
SF3B3-202ENST00000562722 RNF146Q9NTX7 359 aa15.41■□□□□ 0.06
SF3B3-202ENST00000562722 MTMR7Q9Y216 660 aa15.41■□□□□ 0.06
SF3B3-202ENST00000562722 MYH4Q9Y623 1939 aa15.41■□□□□ 0.06
SF3B3-202ENST00000562722 ELP1O95163 1332 aa15.41■□□□□ 0.06
SF3B3-202ENST00000562722 A0A0U1RQG5 324 aaPredicted RBP15.4■□□□□ 0.06
SF3B3-202ENST00000562722 ALAS1P13196 640 aa15.4■□□□□ 0.06
SF3B3-202ENST00000562722 MX1P20591 662 aa15.4■□□□□ 0.06
SF3B3-202ENST00000562722 CST5P28325 142 aaPredicted RBP15.4■□□□□ 0.06
SF3B3-202ENST00000562722 CCSAPQ6IQ19 270 aaPredicted RBP15.4■□□□□ 0.06
SF3B3-202ENST00000562722 CCDC174Q6PII3 467 aa15.4■□□□□ 0.06
SF3B3-202ENST00000562722 CCDC129Q6ZRS4 1044 aa15.4■□□□□ 0.06
SF3B3-202ENST00000562722 KCTD1Q719H9 257 aa15.4■□□□□ 0.06
SF3B3-202ENST00000562722 STAG1Q8WVM7 1258 aa15.4■□□□□ 0.06
SF3B3-202ENST00000562722 GMCL1Q96IK5 515 aa15.4■□□□□ 0.06
SF3B3-202ENST00000562722 FGD4Q96M96 766 aa15.4■□□□□ 0.06
SF3B3-202ENST00000562722 AGBL1Q96MI9 1066 aa15.4■□□□□ 0.06
SF3B3-202ENST00000562722 COL25A1Q9BXS0 654 aaPredicted RBP15.4■□□□□ 0.06
SF3B3-202ENST00000562722 TLR3O15455 904 aaKnown RBP15.39■□□□□ 0.05
SF3B3-202ENST00000562722 ADCY6O43306 1168 aa15.39■□□□□ 0.05
SF3B3-202ENST00000562722 TIMP1P01033 207 aa15.39■□□□□ 0.05
SF3B3-202ENST00000562722 GJA9P57773 515 aa15.39■□□□□ 0.05
SF3B3-202ENST00000562722 SNAP25P60880 206 aa15.39■□□□□ 0.05
SF3B3-202ENST00000562722 TNFAIP2Q03169 654 aa15.39■□□□□ 0.05
SF3B3-202ENST00000562722 CTDSPL2Q05D32 466 aa15.39■□□□□ 0.05
SF3B3-202ENST00000562722 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.39■□□□□ 0.05
SF3B3-202ENST00000562722 TRERF1Q96PN7 1200 aa15.39■□□□□ 0.05
SF3B3-202ENST00000562722 UPF3AQ9H1J1 476 aaKnown RBP15.39■□□□□ 0.05
SF3B3-202ENST00000562722 TBX21Q9UL17 535 aa15.39■□□□□ 0.05
SF3B3-202ENST00000562722 PCDHB15Q9Y5E8 787 aa15.39■□□□□ 0.05
SF3B3-202ENST00000562722 ASB14A6NK59 587 aa15.38■□□□□ 0.05
SF3B3-202ENST00000562722 ARVCFO00192 962 aa15.38■□□□□ 0.05
SF3B3-202ENST00000562722 RANBP6O60518 1105 aaKnown RBP15.38■□□□□ 0.05
SF3B3-202ENST00000562722 BEX3Q00994 111 aa15.38■□□□□ 0.05
SF3B3-202ENST00000562722 PPIGQ13427 754 aaKnown RBP eCLIP15.38■□□□□ 0.051e-7■□□□□ 10.7
SF3B3-202ENST00000562722 CCDC96Q2M329 555 aa15.38■□□□□ 0.05
SF3B3-202ENST00000562722 TKFCQ3LXA3 575 aa15.38■□□□□ 0.05
SF3B3-202ENST00000562722 MFSD5Q6N075 450 aa15.38■□□□□ 0.05
SF3B3-202ENST00000562722 PPP1R12CQ9BZL4 782 aa15.38■□□□□ 0.05
SF3B3-202ENST00000562722 A1CFQ9NQ94 594 aaKnown RBP15.38■□□□□ 0.05
SF3B3-202ENST00000562722 TOMM22Q9NS69 142 aa15.38■□□□□ 0.05
SF3B3-202ENST00000562722 TMEM265A0A087WTH1 108 aa15.37■□□□□ 0.05
SF3B3-202ENST00000562722 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.37■□□□□ 0.05
SF3B3-202ENST00000562722 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.37■□□□□ 0.05
SF3B3-202ENST00000562722 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.37■□□□□ 0.05
SF3B3-202ENST00000562722 NMT2O60551 498 aa15.37■□□□□ 0.05
SF3B3-202ENST00000562722 DNAJB2P25686 324 aa15.37■□□□□ 0.05
SF3B3-202ENST00000562722 RCSD1Q6JBY9 416 aa15.37■□□□□ 0.05
SF3B3-202ENST00000562722 TLK2Q86UE8 772 aa15.37■□□□□ 0.05
SF3B3-202ENST00000562722 TMEM199Q8N511 208 aa15.37■□□□□ 0.05
SF3B3-202ENST00000562722 FAM133AQ8N9E0 248 aa15.37■□□□□ 0.05
SF3B3-202ENST00000562722 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.37■□□□□ 0.055e-9■□□□□ 10.9
SF3B3-202ENST00000562722 AP5M1Q9H0R1 490 aa15.37■□□□□ 0.05
SF3B3-202ENST00000562722 INCENPQ9NQS7 918 aa15.37■□□□□ 0.05
SF3B3-202ENST00000562722 ZNF536O15090 1300 aa15.37■□□□□ 0.05
SF3B3-202ENST00000562722 SOWAHBA6NEL2 793 aa15.36■□□□□ 0.05
SF3B3-202ENST00000562722 CSF2RAP15509 400 aa15.36■□□□□ 0.05
SF3B3-202ENST00000562722 CDK7P50613 346 aa15.36■□□□□ 0.05
SF3B3-202ENST00000562722 ANKRD45Q5TZF3 282 aa15.36■□□□□ 0.05
SF3B3-202ENST00000562722 CXCL17Q6UXB2 119 aa15.36■□□□□ 0.05
SF3B3-202ENST00000562722 NSMFQ6X4W1 530 aa15.36■□□□□ 0.05
SF3B3-202ENST00000562722 EEPD1Q7L9B9 569 aa15.36■□□□□ 0.05
SF3B3-202ENST00000562722 KATNBL1Q9H079 304 aa15.36■□□□□ 0.05
SF3B3-202ENST00000562722 CCPG1Q9ULG6 757 aa15.36■□□□□ 0.05
SF3B3-202ENST00000562722 PRR12Q9ULL5 1215 aa15.36■□□□□ 0.05
SF3B3-202ENST00000562722 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.36■□□□□ 0.05
SF3B3-202ENST00000562722 ZEB2O60315 1214 aa15.35■□□□□ 0.05
SF3B3-202ENST00000562722 RRP12Q5JTH9 1297 aaKnown RBP15.35■□□□□ 0.05
SF3B3-202ENST00000562722 RASGRP2Q7LDG7 609 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms