RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 PARP1P09874 1014 aaKnown RBP10.94□□□□□ -0.66
LDLR-211ENST00000560173 FCER1AP12319 257 aa10.94□□□□□ -0.66
LDLR-211ENST00000560173 UBXN2AP68543 259 aa10.94□□□□□ -0.66
LDLR-211ENST00000560173 KRT32Q14532 448 aa10.94□□□□□ -0.66
LDLR-211ENST00000560173 MTFR1Q15390 333 aa10.94□□□□□ -0.66
LDLR-211ENST00000560173 CCL14Q16627 93 aa10.94□□□□□ -0.66
LDLR-211ENST00000560173 ADCK5Q3MIX3 580 aa10.94□□□□□ -0.66
LDLR-211ENST00000560173 CCDC174Q6PII3 467 aa10.94□□□□□ -0.66
LDLR-211ENST00000560173 TRMT44Q8IYL2 757 aaKnown RBP10.94□□□□□ -0.66
LDLR-211ENST00000560173 TMEM87BQ96K49 555 aa10.94□□□□□ -0.66
LDLR-211ENST00000560173 AGBL1Q96MI9 1066 aa10.94□□□□□ -0.66
LDLR-211ENST00000560173 NEK1Q96PY6 1258 aa10.94□□□□□ -0.66
LDLR-211ENST00000560173 MMP19Q99542 508 aa10.94□□□□□ -0.66
LDLR-211ENST00000560173 CPVLQ9H3G5 476 aa10.94□□□□□ -0.66
LDLR-211ENST00000560173 BIN2Q9UBW5 565 aaPredicted RBP10.94□□□□□ -0.66
LDLR-211ENST00000560173 PALM3A6NDB9 673 aaPredicted RBP10.93□□□□□ -0.66
LDLR-211ENST00000560173 COBLO75128 1261 aa10.93□□□□□ -0.66
LDLR-211ENST00000560173 MYCP01106 439 aaPredicted RBP10.93□□□□□ -0.66
LDLR-211ENST00000560173 IGHA2P01877 340 aa10.93□□□□□ -0.66
LDLR-211ENST00000560173 ICAM1P05362 532 aa10.93□□□□□ -0.66
LDLR-211ENST00000560173 CCL5P13501 91 aa10.93□□□□□ -0.66
LDLR-211ENST00000560173 TAL1P17542 331 aaPredicted RBP10.93□□□□□ -0.66
LDLR-211ENST00000560173 EN2P19622 333 aaPredicted RBP10.93□□□□□ -0.66
LDLR-211ENST00000560173 TROAPQ12815 778 aa10.93□□□□□ -0.66
LDLR-211ENST00000560173 TRIM32Q13049 653 aa10.93□□□□□ -0.66
LDLR-211ENST00000560173 KCTD2Q14681 263 aa10.93□□□□□ -0.66
LDLR-211ENST00000560173 GRM4Q14833 912 aa10.93□□□□□ -0.66
LDLR-211ENST00000560173 TKFCQ3LXA3 575 aa10.93□□□□□ -0.66
LDLR-211ENST00000560173 MAP3K21Q5TCX8 1036 aa10.93□□□□□ -0.66
LDLR-211ENST00000560173 CATIPQ7Z7H3 387 aa10.93□□□□□ -0.66
LDLR-211ENST00000560173 CHST13Q8NET6 341 aa10.93□□□□□ -0.66
LDLR-211ENST00000560173 NPLOC4Q8TAT6 608 aa10.93□□□□□ -0.66
LDLR-211ENST00000560173 UBA5Q9GZZ9 404 aa10.93□□□□□ -0.66
LDLR-211ENST00000560173 UNC93B1Q9H1C4 597 aa10.93□□□□□ -0.66
LDLR-211ENST00000560173 RNF146Q9NTX7 359 aa10.93□□□□□ -0.66
LDLR-211ENST00000560173 FLRT1Q9NZU1 646 aa10.93□□□□□ -0.66
LDLR-211ENST00000560173 FBXO40Q9UH90 709 aa10.93□□□□□ -0.66
LDLR-211ENST00000560173 MAD2L2Q9UI95 211 aa10.93□□□□□ -0.66
LDLR-211ENST00000560173 CCPG1Q9ULG6 757 aa10.93□□□□□ -0.66
LDLR-211ENST00000560173 SNX14Q9Y5W7 946 aa10.93□□□□□ -0.66
LDLR-211ENST00000560173 COL6A3P12111 3177 aa10.92□□□□□ -0.66
LDLR-211ENST00000560173 DDAH1O94760 285 aa10.92□□□□□ -0.66
LDLR-211ENST00000560173 PGK2P07205 417 aa10.92□□□□□ -0.66
LDLR-211ENST00000560173 LIFRP42702 1097 aa10.92□□□□□ -0.66
LDLR-211ENST00000560173 SLC4A3P48751 1232 aa10.92□□□□□ -0.66
LDLR-211ENST00000560173 EXOSC10Q01780 885 aaKnown RBP10.92□□□□□ -0.66
LDLR-211ENST00000560173 SLC35G1Q2M3R5 365 aa10.92□□□□□ -0.66
LDLR-211ENST00000560173 DHX32Q7L7V1 743 aaKnown RBP10.92□□□□□ -0.66
LDLR-211ENST00000560173 DPP9Q86TI2 863 aa10.92□□□□□ -0.66
LDLR-211ENST00000560173 ZNF654Q8IZM8 581 aa10.92□□□□□ -0.66
LDLR-211ENST00000560173 STAG2Q8N3U4 1231 aa10.92□□□□□ -0.66
LDLR-211ENST00000560173 USP26Q9BXU7 913 aa10.92□□□□□ -0.66
LDLR-211ENST00000560173 LRRC2Q9BYS8 371 aa10.92□□□□□ -0.66
LDLR-211ENST00000560173 ACAD9Q9H845 621 aa10.92□□□□□ -0.66
LDLR-211ENST00000560173 HOMER2Q9NSB8 354 aa10.92□□□□□ -0.66
LDLR-211ENST00000560173 SLC5A4Q9NY91 659 aa10.92□□□□□ -0.66
LDLR-211ENST00000560173 DNAJC25-GNG10A0A024R161 153 aa10.91□□□□□ -0.66
LDLR-211ENST00000560173 KLRF2D3W0D1 207 aa10.91□□□□□ -0.66
LDLR-211ENST00000560173 HMGB1P09429 215 aaKnown RBP10.91□□□□□ -0.66
LDLR-211ENST00000560173 ALAS1P13196 640 aa10.91□□□□□ -0.66
LDLR-211ENST00000560173 PRKAR2AP13861 404 aaKnown RBP10.91□□□□□ -0.66
LDLR-211ENST00000560173 CDC37Q16543 378 aaPredicted RBP10.91□□□□□ -0.66
LDLR-211ENST00000560173 ZNF792Q3KQV3 632 aa10.91□□□□□ -0.66
LDLR-211ENST00000560173 OLFML2BQ68BL8 750 aa10.91□□□□□ -0.66
LDLR-211ENST00000560173 NFXL1Q6ZNB6 911 aa10.91□□□□□ -0.66
LDLR-211ENST00000560173 SGMS1Q86VZ5 419 aa10.91□□□□□ -0.66
LDLR-211ENST00000560173 ADGRF4Q8IZF3 695 aa10.91□□□□□ -0.66
LDLR-211ENST00000560173 TMTC2Q8N394 836 aa10.91□□□□□ -0.66
LDLR-211ENST00000560173 MAML3Q96JK9 1138 aa10.91□□□□□ -0.66
LDLR-211ENST00000560173 TCEANC2Q96MN5 208 aa10.91□□□□□ -0.66
LDLR-211ENST00000560173 JAKMIP1Q96N16 626 aaKnown RBP10.91□□□□□ -0.66
LDLR-211ENST00000560173 TRERF1Q96PN7 1200 aa10.91□□□□□ -0.66
LDLR-211ENST00000560173 MAP3K14Q99558 947 aa10.91□□□□□ -0.66
LDLR-211ENST00000560173 MYL10Q9BUA6 226 aa10.91□□□□□ -0.66
LDLR-211ENST00000560173 TMEM106CQ9BVX2 250 aa10.91□□□□□ -0.66
LDLR-211ENST00000560173 RNF208Q9H0X6 261 aa10.91□□□□□ -0.66
LDLR-211ENST00000560173 JMJD4Q9H9V9 463 aa10.91□□□□□ -0.66
LDLR-211ENST00000560173 A1CFQ9NQ94 594 aaKnown RBP10.91□□□□□ -0.66
LDLR-211ENST00000560173 PAK6Q9NQU5 681 aaPredicted RBP10.91□□□□□ -0.66
LDLR-211ENST00000560173 PNMA2Q9UL42 364 aa10.91□□□□□ -0.66
LDLR-211ENST00000560173 CCDC69A6NI79 296 aa10.9□□□□□ -0.66
LDLR-211ENST00000560173 GJB1P08034 283 aa10.9□□□□□ -0.66
LDLR-211ENST00000560173 CPA1P15085 419 aa10.9□□□□□ -0.66
LDLR-211ENST00000560173 CACNB2Q08289 660 aaPredicted RBP10.9□□□□□ -0.66
LDLR-211ENST00000560173 QRICH1Q2TAL8 776 aa10.9□□□□□ -0.66
LDLR-211ENST00000560173 MUM1L1Q5H9M0 696 aa10.9□□□□□ -0.66
LDLR-211ENST00000560173 MFSD14CQ5VZR4 134 aa10.9□□□□□ -0.66
LDLR-211ENST00000560173 ANKRD35Q8N283 1001 aa10.9□□□□□ -0.66
LDLR-211ENST00000560173 NUP133Q8WUM0 1156 aa10.9□□□□□ -0.66
LDLR-211ENST00000560173 MTMR8Q96EF0 704 aa10.9□□□□□ -0.66
LDLR-211ENST00000560173 DDX11Q96FC9 970 aa10.9□□□□□ -0.66
LDLR-211ENST00000560173 FGD4Q96M96 766 aa10.9□□□□□ -0.66
LDLR-211ENST00000560173 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.9□□□□□ -0.669e-6■□□□□ 8.2
LDLR-211ENST00000560173 TSHZ2Q9NRE2 1034 aa10.9□□□□□ -0.66
LDLR-211ENST00000560173 DIS3Q9Y2L1 958 aaKnown RBP10.9□□□□□ -0.66
LDLR-211ENST00000560173 SMCHD1A6NHR9 2005 aa10.9□□□□□ -0.66
LDLR-211ENST00000560173 TRIOBPQ9H2D6 2365 aa10.9□□□□□ -0.66
LDLR-211ENST00000560173 PFASO15067 1338 aa10.89□□□□□ -0.67
LDLR-211ENST00000560173 RPTORQ8N122 1335 aa10.89□□□□□ -0.67
LDLR-211ENST00000560173 RANBP2P49792 3224 aaKnown RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms