RNA–Protein interactions for RNA: ENST00000556432.1

ACTN1-219, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 558 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-219ENST00000556432 ZNF467Q7Z7K2 595 aaPredicted RBP16.74■□□□□ 0.27
ACTN1-219ENST00000556432 SLC4A7Q9Y6M7 1214 aa16.74■□□□□ 0.27
ACTN1-219ENST00000556432 BAZ2AQ9UIF9 1905 aaKnown RBP16.74■□□□□ 0.27
ACTN1-219ENST00000556432 CHD7Q9P2D1 2997 aa16.73■□□□□ 0.27
ACTN1-219ENST00000556432 DNAJC25-GNG10A0A024R161 153 aa16.73■□□□□ 0.27
ACTN1-219ENST00000556432 KCNQ1P51787 676 aa16.73■□□□□ 0.27
ACTN1-219ENST00000556432 SLFNL1Q499Z3 407 aa16.73■□□□□ 0.27
ACTN1-219ENST00000556432 CXCL17Q6UXB2 119 aa16.73■□□□□ 0.27
ACTN1-219ENST00000556432 RAVER2Q9HCJ3 691 aaKnown RBP16.73■□□□□ 0.27
ACTN1-219ENST00000556432 UMODL1Q5DID0 1318 aa16.72■□□□□ 0.27
ACTN1-219ENST00000556432 CD4P01730 458 aa16.72■□□□□ 0.27
ACTN1-219ENST00000556432 IFIT2P09913 472 aaKnown RBP16.72■□□□□ 0.27
ACTN1-219ENST00000556432 BMP1P13497 986 aa16.72■□□□□ 0.27
ACTN1-219ENST00000556432 MYOGP15173 224 aa16.72■□□□□ 0.27
ACTN1-219ENST00000556432 HSP90AB4PQ58FF6 505 aa16.72■□□□□ 0.27
ACTN1-219ENST00000556432 CEP85Q6P2H3 762 aa16.72■□□□□ 0.27
ACTN1-219ENST00000556432 PRPF38AQ8NAV1 312 aaKnown RBP16.72■□□□□ 0.27
ACTN1-219ENST00000556432 KIFC2Q96AC6 838 aa16.72■□□□□ 0.27
ACTN1-219ENST00000556432 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.72■□□□□ 0.27
ACTN1-219ENST00000556432 HOMER2Q9NSB8 354 aa16.72■□□□□ 0.27
ACTN1-219ENST00000556432 GBF1Q92538 1859 aa16.71■□□□□ 0.27
ACTN1-219ENST00000556432 GTPBP6O43824 516 aaPredicted RBP16.71■□□□□ 0.27
ACTN1-219ENST00000556432 HOXD11P31277 338 aaPredicted RBP16.71■□□□□ 0.27
ACTN1-219ENST00000556432 TNFAIP2Q03169 654 aa16.71■□□□□ 0.27
ACTN1-219ENST00000556432 CCDC144CPQ8IYA2 1237 aa16.71■□□□□ 0.27
ACTN1-219ENST00000556432 STK11IPQ8N1F8 1099 aa16.71■□□□□ 0.27
ACTN1-219ENST00000556432 CLASRPQ8N2M8 674 aaKnown RBP16.71■□□□□ 0.27
ACTN1-219ENST00000556432 RHPN1Q8TCX5 695 aa16.71■□□□□ 0.27
ACTN1-219ENST00000556432 PAG1Q9NWQ8 432 aa16.71■□□□□ 0.27
ACTN1-219ENST00000556432 FBXO40Q9UH90 709 aa16.71■□□□□ 0.27
ACTN1-219ENST00000556432 ISY1Q9ULR0 285 aaKnown RBP16.71■□□□□ 0.27
ACTN1-219ENST00000556432 PCDHA11Q9Y5I1 949 aa16.71■□□□□ 0.27
ACTN1-219ENST00000556432 SLC4A4Q9Y6R1 1079 aa16.71■□□□□ 0.27
ACTN1-219ENST00000556432 MCM3APO60318 1980 aa16.71■□□□□ 0.27
ACTN1-219ENST00000556432 CABYRO75952 493 aa16.7■□□□□ 0.26
ACTN1-219ENST00000556432 NDUFB10O96000 172 aa16.7■□□□□ 0.26
ACTN1-219ENST00000556432 ATP2A2P16615 1042 aaKnown RBP16.7■□□□□ 0.26
ACTN1-219ENST00000556432 ADD2P35612 726 aa16.7■□□□□ 0.26
ACTN1-219ENST00000556432 ITGA7Q13683 1181 aa16.7■□□□□ 0.26
ACTN1-219ENST00000556432 TLK2Q86UE8 772 aa16.7■□□□□ 0.26
ACTN1-219ENST00000556432 RPUSD2Q8IZ73 545 aaKnown RBP16.7■□□□□ 0.26
ACTN1-219ENST00000556432 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.7■□□□□ 0.26
ACTN1-219ENST00000556432 NOC4LQ9BVI4 516 aaKnown RBP16.7■□□□□ 0.26
ACTN1-219ENST00000556432 AP5M1Q9H0R1 490 aa16.7■□□□□ 0.26
ACTN1-219ENST00000556432 TRPV6Q9H1D0 765 aa16.7■□□□□ 0.26
ACTN1-219ENST00000556432 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.69■□□□□ 0.26
ACTN1-219ENST00000556432 F5H6K3 240 aa16.69■□□□□ 0.26
ACTN1-219ENST00000556432 ATP2A1O14983 1001 aa16.69■□□□□ 0.26
ACTN1-219ENST00000556432 CTAGE5O15320 804 aa16.69■□□□□ 0.26
ACTN1-219ENST00000556432 ZEB2O60315 1214 aa16.69■□□□□ 0.26
ACTN1-219ENST00000556432 KLRC3Q07444 240 aa16.69■□□□□ 0.26
ACTN1-219ENST00000556432 FSCN1Q16658 493 aaKnown RBP16.69■□□□□ 0.26
ACTN1-219ENST00000556432 CTR9Q6PD62 1173 aa16.69■□□□□ 0.26
ACTN1-219ENST00000556432 CHST13Q8NET6 341 aa16.69■□□□□ 0.26
ACTN1-219ENST00000556432 FGD4Q96M96 766 aa16.69■□□□□ 0.26
ACTN1-219ENST00000556432 MKNK2Q9HBH9 465 aa16.69■□□□□ 0.26
ACTN1-219ENST00000556432 RFXAPO00287 272 aa16.68■□□□□ 0.26
ACTN1-219ENST00000556432 ERC2O15083 957 aa16.68■□□□□ 0.26
ACTN1-219ENST00000556432 TMEM67Q5HYA8 995 aa16.68■□□□□ 0.26
ACTN1-219ENST00000556432 TMEM31Q5JXX7 168 aa16.68■□□□□ 0.26
ACTN1-219ENST00000556432 SCLYQ96I15 445 aa16.68■□□□□ 0.26
ACTN1-219ENST00000556432 LRFN3Q9BTN0 628 aa16.68■□□□□ 0.26
ACTN1-219ENST00000556432 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.68■□□□□ 0.26
ACTN1-219ENST00000556432 WNT8AQ9H1J5 351 aa16.68■□□□□ 0.26
ACTN1-219ENST00000556432 BOLA2Q9H3K6 86 aa16.68■□□□□ 0.26
ACTN1-219ENST00000556432 EPHX3Q9H6B9 360 aa16.68■□□□□ 0.26
ACTN1-219ENST00000556432 CERS4Q9HA82 394 aa16.68■□□□□ 0.26
ACTN1-219ENST00000556432 CLIP2Q9UDT6 1046 aa16.68■□□□□ 0.26
ACTN1-219ENST00000556432 PRRC2BQ5JSZ5 2229 aaKnown RBP16.68■□□□□ 0.26
ACTN1-219ENST00000556432 XIRP2A4UGR9 3374 aa16.68■□□□□ 0.26
ACTN1-219ENST00000556432 DYNC1LI2O43237 492 aaPredicted RBP16.67■□□□□ 0.26
ACTN1-219ENST00000556432 B4GALT4O60513 344 aa16.67■□□□□ 0.26
ACTN1-219ENST00000556432 CA3P07451 260 aa16.67■□□□□ 0.26
ACTN1-219ENST00000556432 RLBP1P12271 317 aa16.67■□□□□ 0.26
ACTN1-219ENST00000556432 PSMC6P62333 389 aa16.67■□□□□ 0.26
ACTN1-219ENST00000556432 CNTN2Q02246 1040 aa16.67■□□□□ 0.26
ACTN1-219ENST00000556432 SLC43A3Q8NBI5 491 aa16.67■□□□□ 0.26
ACTN1-219ENST00000556432 KIF1BPQ96EK5 621 aa16.67■□□□□ 0.26
ACTN1-219ENST00000556432 SLC38A10Q9HBR0 1119 aa16.67■□□□□ 0.26
ACTN1-219ENST00000556432 NYAP2Q9P242 653 aa16.67■□□□□ 0.26
ACTN1-219ENST00000556432 ARPP21Q9UBL0 812 aaPredicted RBP16.67■□□□□ 0.26
ACTN1-219ENST00000556432 FEM1BQ9UK73 627 aa16.67■□□□□ 0.26
ACTN1-219ENST00000556432 ASTN1O14525 1302 aa16.67■□□□□ 0.26
ACTN1-219ENST00000556432 REV3LO60673 3130 aa16.66■□□□□ 0.26
ACTN1-219ENST00000556432 CHGBP05060 677 aa16.66■□□□□ 0.26
ACTN1-219ENST00000556432 RASA1P20936 1047 aa16.66■□□□□ 0.26
ACTN1-219ENST00000556432 DEFB128Q7Z7B8 93 aa16.66■□□□□ 0.26
ACTN1-219ENST00000556432 KATNBL1Q9H079 304 aa16.66■□□□□ 0.26
ACTN1-219ENST00000556432 ACAD9Q9H845 621 aa16.66■□□□□ 0.26
ACTN1-219ENST00000556432 COG6Q9Y2V7 657 aa16.66■□□□□ 0.26
ACTN1-219ENST00000556432 MTCH2Q9Y6C9 303 aa16.66■□□□□ 0.26
ACTN1-219ENST00000556432 ASB14A6NK59 587 aa16.65■□□□□ 0.26
ACTN1-219ENST00000556432 MINDY4BA8MYZ0 360 aa16.65■□□□□ 0.26
ACTN1-219ENST00000556432 PTGS1P23219 599 aa16.65■□□□□ 0.26
ACTN1-219ENST00000556432 IKQ13123 557 aaPredicted RBP16.65■□□□□ 0.26
ACTN1-219ENST00000556432 TTLL4Q14679 1199 aa16.65■□□□□ 0.26
ACTN1-219ENST00000556432 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.65■□□□□ 0.26
ACTN1-219ENST00000556432 ARNTL2Q8WYA1 636 aa16.65■□□□□ 0.26
ACTN1-219ENST00000556432 SEZ6LQ9BYH1 1024 aa16.65■□□□□ 0.26
ACTN1-219ENST00000556432 COG5Q9UP83 839 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms