RNA–Protein interactions for RNA: ENST00000554074.1

SLIRP-203, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 3

Gene SLIRP, Length 445 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-203ENST00000554074 VPS53Q5VIR6 699 aa7.82□□□□□ -1.16
SLIRP-203ENST00000554074 RCSD1Q6JBY9 416 aa7.82□□□□□ -1.16
SLIRP-203ENST00000554074 CCDC129Q6ZRS4 1044 aa7.82□□□□□ -1.16
SLIRP-203ENST00000554074 ANKRD35Q8N283 1001 aa7.82□□□□□ -1.16
SLIRP-203ENST00000554074 FAM133AQ8N9E0 248 aa7.82□□□□□ -1.16
SLIRP-203ENST00000554074 LRCH3Q96II8 777 aa7.82□□□□□ -1.16
SLIRP-203ENST00000554074 FGD4Q96M96 766 aa7.82□□□□□ -1.16
SLIRP-203ENST00000554074 ABHD16BQ9H3Z7 469 aa7.82□□□□□ -1.16
SLIRP-203ENST00000554074 RWDD1Q9H446 243 aaPredicted RBP7.82□□□□□ -1.16
SLIRP-203ENST00000554074 OSBPL3Q9H4L5 887 aa7.82□□□□□ -1.16
SLIRP-203ENST00000554074 ACAD9Q9H845 621 aa7.82□□□□□ -1.16
SLIRP-203ENST00000554074 RAVER2Q9HCJ3 691 aaKnown RBP7.82□□□□□ -1.16
SLIRP-203ENST00000554074 PDLIM7Q9NR12 457 aa7.82□□□□□ -1.16
SLIRP-203ENST00000554074 TCP11L1Q9NUJ3 509 aa7.82□□□□□ -1.16
SLIRP-203ENST00000554074 FAM184BQ9ULE4 1060 aa7.82□□□□□ -1.16
SLIRP-203ENST00000554074 STX8Q9UNK0 236 aa7.82□□□□□ -1.16
SLIRP-203ENST00000554074 ATP11BQ9Y2G3 1177 aa7.82□□□□□ -1.16
SLIRP-203ENST00000554074 ZNF536O15090 1300 aa7.81□□□□□ -1.16
SLIRP-203ENST00000554074 CCDC171Q6TFL3 1326 aa7.81□□□□□ -1.16
SLIRP-203ENST00000554074 A0A0D9SFI3 127 aa7.81□□□□□ -1.16
SLIRP-203ENST00000554074 A0A1W2PQ45 241 aaPredicted RBP7.81□□□□□ -1.16
SLIRP-203ENST00000554074 A0A1W2PQY0 241 aa7.81□□□□□ -1.16
SLIRP-203ENST00000554074 MOXD2PA6NHM9 499 aa7.81□□□□□ -1.16
SLIRP-203ENST00000554074 DLL1O00548 723 aa7.81□□□□□ -1.16
SLIRP-203ENST00000554074 RANBP6O60518 1105 aaKnown RBP7.81□□□□□ -1.16
SLIRP-203ENST00000554074 HSPD1P10809 573 aaKnown RBP7.81□□□□□ -1.16
SLIRP-203ENST00000554074 TOP1P11387 765 aaKnown RBP7.81□□□□□ -1.16
SLIRP-203ENST00000554074 MCCP23508 829 aa7.81□□□□□ -1.16
SLIRP-203ENST00000554074 MFAP1P55081 439 aaKnown RBP7.81□□□□□ -1.16
SLIRP-203ENST00000554074 ACVR2BQ13705 512 aa7.81□□□□□ -1.16
SLIRP-203ENST00000554074 TRIM60Q495X7 471 aa7.81□□□□□ -1.16
SLIRP-203ENST00000554074 FAM109BQ6ICB4 259 aaPredicted RBP7.81□□□□□ -1.16
SLIRP-203ENST00000554074 CCSAPQ6IQ19 270 aaPredicted RBP7.81□□□□□ -1.16
SLIRP-203ENST00000554074 BTNL9Q6UXG8 535 aa7.81□□□□□ -1.16
SLIRP-203ENST00000554074 ARMCX2Q7L311 632 aa7.81□□□□□ -1.16
SLIRP-203ENST00000554074 KLHDC9Q8NEP7 349 aa7.81□□□□□ -1.16
SLIRP-203ENST00000554074 NUP133Q8WUM0 1156 aa7.81□□□□□ -1.16
SLIRP-203ENST00000554074 DCAF4Q8WV16 495 aa7.81□□□□□ -1.16
SLIRP-203ENST00000554074 FAM227BQ96M60 508 aa7.81□□□□□ -1.16
SLIRP-203ENST00000554074 TTC14Q96N46 770 aa7.81□□□□□ -1.16
SLIRP-203ENST00000554074 TOX2Q96NM4 488 aa7.81□□□□□ -1.16
SLIRP-203ENST00000554074 LNPKQ9C0E8 428 aa7.81□□□□□ -1.16
SLIRP-203ENST00000554074 UPF3AQ9H1J1 476 aaKnown RBP7.81□□□□□ -1.16
SLIRP-203ENST00000554074 A1CFQ9NQ94 594 aaKnown RBP7.81□□□□□ -1.16
SLIRP-203ENST00000554074 RNF146Q9NTX7 359 aa7.81□□□□□ -1.16
SLIRP-203ENST00000554074 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.81□□□□□ -1.16
SLIRP-203ENST00000554074 PNMA2Q9UL42 364 aa7.81□□□□□ -1.16
SLIRP-203ENST00000554074 TACC3Q9Y6A5 838 aa7.81□□□□□ -1.16
SLIRP-203ENST00000554074 ELP1O95163 1332 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 SYNRGQ9UMZ2 1314 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 MYH7BA7E2Y1 1941 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 LOC102724159A0A0B4J2E5 919 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 ASB14A6NK59 587 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 POTEB2H3BUK9 544 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 KIAA0355O15063 1070 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 NMT2O60551 498 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 PGK1P00558 417 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 MYCNP04198 464 aaPredicted RBP7.8□□□□□ -1.16
SLIRP-203ENST00000554074 CLTBP09497 229 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 ACLYP53396 1101 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 GJA9P57773 515 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 NUCB1Q02818 461 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 TLE2Q04725 743 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 NMIQ13287 307 aaPredicted RBP7.8□□□□□ -1.16
SLIRP-203ENST00000554074 PWP2Q15269 919 aaKnown RBP7.8□□□□□ -1.16
SLIRP-203ENST00000554074 CCDC144BQ3MJ40 725 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 AKNAD1Q5T1N1 836 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 ANKRD33Q7Z3H0 272 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 ZNF589Q86UQ0 364 aaPredicted RBP7.8□□□□□ -1.16
SLIRP-203ENST00000554074 CHD1LQ86WJ1 897 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 PLEKHM2Q8IWE5 1019 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 PCSK9Q8NBP7 692 aaKnown RBP7.8□□□□□ -1.16
SLIRP-203ENST00000554074 FERMT2Q96AC1 680 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 TRERF1Q96PN7 1200 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 KATNBL1Q9H079 304 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 RANBP17Q9H2T7 1088 aaKnown RBP7.8□□□□□ -1.16
SLIRP-203ENST00000554074 RNF41Q9H4P4 317 aaPredicted RBP7.8□□□□□ -1.16
SLIRP-203ENST00000554074 SPC25Q9HBM1 224 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 INCENPQ9NQS7 918 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 ZHX1Q9UKY1 873 aaPredicted RBP7.8□□□□□ -1.16
SLIRP-203ENST00000554074 PRR12Q9ULL5 1215 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 GBF1Q92538 1859 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 SCN10AQ9Y5Y9 1956 aa7.8□□□□□ -1.16
SLIRP-203ENST00000554074 MROH7Q68CQ1 1323 aa7.79□□□□□ -1.16
SLIRP-203ENST00000554074 TRIM43BA6NCK2 446 aa7.79□□□□□ -1.16
SLIRP-203ENST00000554074 TRIM6-TRIM34B2RNG4 842 aa7.79□□□□□ -1.16
SLIRP-203ENST00000554074 HIP1O00291 1037 aa7.79□□□□□ -1.16
SLIRP-203ENST00000554074 ICAM1P05362 532 aa7.79□□□□□ -1.16
SLIRP-203ENST00000554074 SNHG28P0DPA3 235 aa7.79□□□□□ -1.16
SLIRP-203ENST00000554074 SDSP20132 328 aa7.79□□□□□ -1.16
SLIRP-203ENST00000554074 SLC4A3P48751 1232 aa7.79□□□□□ -1.16
SLIRP-203ENST00000554074 CNTN2Q02246 1040 aa7.79□□□□□ -1.16
SLIRP-203ENST00000554074 IKQ13123 557 aaPredicted RBP7.79□□□□□ -1.16
SLIRP-203ENST00000554074 MFSD6Q6ZSS7 791 aa7.79□□□□□ -1.16
SLIRP-203ENST00000554074 KCTD1Q719H9 257 aa7.79□□□□□ -1.16
SLIRP-203ENST00000554074 CCDC144CPQ8IYA2 1237 aa7.79□□□□□ -1.16
SLIRP-203ENST00000554074 DEFB123Q8N688 67 aa7.79□□□□□ -1.16
SLIRP-203ENST00000554074 MORC4Q8TE76 937 aa7.79□□□□□ -1.16
SLIRP-203ENST00000554074 TRIM43Q96BQ3 446 aaPredicted RBP7.79□□□□□ -1.16
SLIRP-203ENST00000554074 LENG1Q96BZ8 264 aaPredicted RBP7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms