RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 SFPQP23246 707 aaKnown RBP eCLIP12.56□□□□□ -0.41e-6■■■■□ 20.4
CUX1-212ENST00000547394 CCT6AP40227 531 aaKnown RBP12.56□□□□□ -0.4
CUX1-212ENST00000547394 RRAGBQ5VZM2 374 aa12.56□□□□□ -0.4
CUX1-212ENST00000547394 PODNQ7Z5L7 613 aa12.56□□□□□ -0.4
CUX1-212ENST00000547394 SH3RF1Q7Z6J0 888 aa12.56□□□□□ -0.4
CUX1-212ENST00000547394 IQUBQ8NA54 791 aa12.56□□□□□ -0.4
CUX1-212ENST00000547394 ZMYND12Q9H0C1 365 aa12.56□□□□□ -0.4
CUX1-212ENST00000547394 JMJD4Q9H9V9 463 aa12.56□□□□□ -0.4
CUX1-212ENST00000547394 TRIM49BA6NDI0 452 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 SLC37A4O43826 429 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 EEF2P13639 858 aaKnown RBP12.55□□□□□ -0.4
CUX1-212ENST00000547394 RRP1BQ14684 758 aaKnown RBP12.55□□□□□ -0.4
CUX1-212ENST00000547394 NAA30Q147X3 362 aaPredicted RBP12.55□□□□□ -0.4
CUX1-212ENST00000547394 NAALADL2Q58DX5 795 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 CCDC178Q5BJE1 867 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 NT5DC1Q5TFE4 455 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 TMED8Q6PL24 325 aaPredicted RBP12.55□□□□□ -0.4
CUX1-212ENST00000547394 REXO1Q8N1G1 1221 aaKnown RBP12.55□□□□□ -0.4
CUX1-212ENST00000547394 USP17L15C9J2P7 530 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 USP17L13C9JLJ4 530 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 USP17L11C9JVI0 530 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 USP17L18D6R9N7 530 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 USP17L22D6RA61 530 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 USP17L17D6RBQ6 530 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 USP17L19D6RCP7 530 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 USP17L20D6RJB6 530 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 UBA7P41226 1012 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 USP17L24Q0WX57 530 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 USP17L6PQ6QN14 398 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 MLKLQ8NB16 471 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 FLAD1Q8NFF5 587 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 C6orf50Q9HD87 102 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 SH3GLB2Q9NR46 395 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 PPP1R3GB7ZBB8 358 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 TRAPPC10P48553 1259 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 NONOQ15233 471 aaKnown RBP eCLIP12.55□□□□□ -0.41e-6■■■□□ 18.5
CUX1-212ENST00000547394 HHIPL2Q6UWX4 724 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 CCDC84Q86UT8 332 aaPredicted RBP12.55□□□□□ -0.4
CUX1-212ENST00000547394 SPATA20Q8TB22 786 aa12.55□□□□□ -0.4
CUX1-212ENST00000547394 LRRC37AA6NMS7 1700 aa12.54□□□□□ -0.4
CUX1-212ENST00000547394 SYNRGQ9UMZ2 1314 aa12.54□□□□□ -0.4
CUX1-212ENST00000547394 POTEMA6NI47 508 aa12.54□□□□□ -0.4
CUX1-212ENST00000547394 BMP15O95972 392 aa12.54□□□□□ -0.4
CUX1-212ENST00000547394 ERCC3P19447 782 aa12.54□□□□□ -0.4
CUX1-212ENST00000547394 ZNF543Q08ER8 600 aa12.54□□□□□ -0.4
CUX1-212ENST00000547394 CERKLQ49MI3 558 aaPredicted RBP12.54□□□□□ -0.4
CUX1-212ENST00000547394 FAM177A1Q8N128 213 aaPredicted RBP12.54□□□□□ -0.4
CUX1-212ENST00000547394 ZDHHC15Q96MV8 337 aa12.54□□□□□ -0.4
CUX1-212ENST00000547394 TRIM34Q9BYJ4 488 aa12.54□□□□□ -0.4
CUX1-212ENST00000547394 STK32BQ9NY57 414 aa12.54□□□□□ -0.4
CUX1-212ENST00000547394 IGKV6D-41A0A0C4DH26 115 aa12.54□□□□□ -0.4
CUX1-212ENST00000547394 RRP9O43818 475 aaKnown RBP12.54□□□□□ -0.4
CUX1-212ENST00000547394 EDIL3O43854 480 aa12.54□□□□□ -0.4
CUX1-212ENST00000547394 NEMFO60524 1076 aa12.54□□□□□ -0.4
CUX1-212ENST00000547394 PLCG1P19174 1290 aa12.54□□□□□ -0.4
CUX1-212ENST00000547394 IKQ13123 557 aaPredicted RBP12.54□□□□□ -0.4
CUX1-212ENST00000547394 USH1GQ495M9 461 aa12.54□□□□□ -0.4
CUX1-212ENST00000547394 STRIP1Q5VSL9 837 aa12.54□□□□□ -0.4
CUX1-212ENST00000547394 E4F1Q66K89 784 aaPredicted RBP12.54□□□□□ -0.4
CUX1-212ENST00000547394 KANK3Q6NY19 840 aa12.54□□□□□ -0.4
CUX1-212ENST00000547394 CERS3Q8IU89 383 aa12.54□□□□□ -0.4
CUX1-212ENST00000547394 CAMKK2Q96RR4 588 aa12.54□□□□□ -0.4
CUX1-212ENST00000547394 RIOX1Q9H6W3 641 aa12.54□□□□□ -0.4
CUX1-212ENST00000547394 DISC1Q9NRI5 854 aa12.54□□□□□ -0.4
CUX1-212ENST00000547394 SHTN1A0MZ66 631 aa12.53□□□□□ -0.4
CUX1-212ENST00000547394 ZNF18P17022 549 aa12.53□□□□□ -0.4
CUX1-212ENST00000547394 ZYXQ15942 572 aaKnown RBP12.53□□□□□ -0.4
CUX1-212ENST00000547394 NEK8Q86SG6 692 aa12.53□□□□□ -0.4
CUX1-212ENST00000547394 VSTM4Q8IW00 320 aa12.53□□□□□ -0.4
CUX1-212ENST00000547394 C7orf43Q8WVR3 580 aa12.53□□□□□ -0.4
CUX1-212ENST00000547394 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.53□□□□□ -0.47e-6■□□□□ 9.2
CUX1-212ENST00000547394 V9GYY5 206 aaPredicted RBP12.53□□□□□ -0.4
CUX1-212ENST00000547394 TPM2P07951 284 aa12.53□□□□□ -0.4
CUX1-212ENST00000547394 PMS1P54277 932 aaKnown RBP12.53□□□□□ -0.4
CUX1-212ENST00000547394 GLIPR1L2Q4G1C9 344 aa12.53□□□□□ -0.4
CUX1-212ENST00000547394 CEP135Q66GS9 1140 aa12.53□□□□□ -0.4
CUX1-212ENST00000547394 SIAH1Q8IUQ4 282 aa12.53□□□□□ -0.4
CUX1-212ENST00000547394 NUDT12Q9BQG2 462 aa12.53□□□□□ -0.4
CUX1-212ENST00000547394 GH2P01242 217 aa12.52□□□□□ -0.4
CUX1-212ENST00000547394 RPN1P04843 607 aaKnown RBP12.52□□□□□ -0.4
CUX1-212ENST00000547394 OR52Z1P0C646 297 aa12.52□□□□□ -0.4
CUX1-212ENST00000547394 SLC1A4P43007 532 aa12.52□□□□□ -0.4
CUX1-212ENST00000547394 ADCY7P51828 1080 aa12.52□□□□□ -0.4
CUX1-212ENST00000547394 MIGA2Q7L4E1 593 aa12.52□□□□□ -0.4
CUX1-212ENST00000547394 CCAR2Q8N163 923 aaKnown RBP12.52□□□□□ -0.4
CUX1-212ENST00000547394 ENOX1Q8TC92 643 aaKnown RBP12.52□□□□□ -0.4
CUX1-212ENST00000547394 ZFP91Q96JP5 570 aaPredicted RBP12.52□□□□□ -0.4
CUX1-212ENST00000547394 LZTS2Q9BRK4 669 aa12.52□□□□□ -0.4
CUX1-212ENST00000547394 VEZTQ9HBM0 779 aa12.52□□□□□ -0.4
CUX1-212ENST00000547394 ZBTB22O15209 634 aa12.52□□□□□ -0.41
CUX1-212ENST00000547394 GNA11P29992 359 aa12.52□□□□□ -0.41
CUX1-212ENST00000547394 LONP1P36776 959 aaKnown RBP12.52□□□□□ -0.41
CUX1-212ENST00000547394 TXLNAP40222 546 aa12.52□□□□□ -0.41
CUX1-212ENST00000547394 PRCPP42785 496 aa12.52□□□□□ -0.41
CUX1-212ENST00000547394 SLC30A10Q6XR72 485 aa12.52□□□□□ -0.41
CUX1-212ENST00000547394 CABP7Q86V35 215 aa12.52□□□□□ -0.41
CUX1-212ENST00000547394 CSRNP1Q96S65 589 aa12.52□□□□□ -0.41
CUX1-212ENST00000547394 VPS16Q9H269 839 aa12.52□□□□□ -0.41
CUX1-212ENST00000547394 SUGT1Q9Y2Z0 365 aa12.52□□□□□ -0.41
CUX1-212ENST00000547394 NRXN2Q9P2S2 1712 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms