RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 PLXNB2O15031 1838 aa11.04□□□□□ -0.64
YBX3-218ENST00000546298 BAZ2AQ9UIF9 1905 aaKnown RBP11.03□□□□□ -0.64
YBX3-218ENST00000546298 ASB14A6NK59 587 aa11.03□□□□□ -0.64
YBX3-218ENST00000546298 ZNF213O14771 459 aa11.03□□□□□ -0.64
YBX3-218ENST00000546298 SNAI1O95863 264 aaPredicted RBP11.03□□□□□ -0.64
YBX3-218ENST00000546298 ALAS1P13196 640 aa11.03□□□□□ -0.64
YBX3-218ENST00000546298 TAL1P17542 331 aaPredicted RBP11.03□□□□□ -0.64
YBX3-218ENST00000546298 HAND2P61296 217 aa11.03□□□□□ -0.64
YBX3-218ENST00000546298 ACVR2BQ13705 512 aa11.03□□□□□ -0.64
YBX3-218ENST00000546298 C1orf53Q5VUE5 145 aa11.03□□□□□ -0.64
YBX3-218ENST00000546298 CWC27Q6UX04 472 aaKnown RBP11.03□□□□□ -0.64
YBX3-218ENST00000546298 ESR2Q92731 530 aa11.03□□□□□ -0.64
YBX3-218ENST00000546298 AGBL1Q96MI9 1066 aa11.03□□□□□ -0.64
YBX3-218ENST00000546298 TRERF1Q96PN7 1200 aa11.03□□□□□ -0.64
YBX3-218ENST00000546298 TSEN34Q9BSV6 310 aaKnown RBP11.03□□□□□ -0.64
YBX3-218ENST00000546298 SPC25Q9HBM1 224 aa11.03□□□□□ -0.64
YBX3-218ENST00000546298 HOMER2Q9NSB8 354 aa11.03□□□□□ -0.64
YBX3-218ENST00000546298 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.03□□□□□ -0.64
YBX3-218ENST00000546298 CTNNA3Q9UI47 895 aa11.03□□□□□ -0.64
YBX3-218ENST00000546298 PRR12Q9ULL5 1215 aa11.03□□□□□ -0.64
YBX3-218ENST00000546298 PHF24Q9UPV7 400 aa11.03□□□□□ -0.64
YBX3-218ENST00000546298 MTMR7Q9Y216 660 aa11.03□□□□□ -0.64
YBX3-218ENST00000546298 ATP11BQ9Y2G3 1177 aa11.03□□□□□ -0.64
YBX3-218ENST00000546298 TACC3Q9Y6A5 838 aa11.03□□□□□ -0.64
YBX3-218ENST00000546298 CEP290O15078 2479 aa11.02□□□□□ -0.64
YBX3-218ENST00000546298 DUSP11O75319 330 aaKnown RBP11.02□□□□□ -0.65
YBX3-218ENST00000546298 PGK1P00558 417 aa11.02□□□□□ -0.65
YBX3-218ENST00000546298 SNX17Q15036 470 aa11.02□□□□□ -0.65
YBX3-218ENST00000546298 LRIT3Q3SXY7 679 aa11.02□□□□□ -0.65
YBX3-218ENST00000546298 CCDC174Q6PII3 467 aa11.02□□□□□ -0.65
YBX3-218ENST00000546298 BTNL9Q6UXG8 535 aa11.02□□□□□ -0.65
YBX3-218ENST00000546298 ARMCX2Q7L311 632 aa11.02□□□□□ -0.65
YBX3-218ENST00000546298 DGKHQ86XP1 1220 aa11.02□□□□□ -0.65
YBX3-218ENST00000546298 TDHQ8IZJ6 230 aa11.02□□□□□ -0.65
YBX3-218ENST00000546298 NUP133Q8WUM0 1156 aa11.02□□□□□ -0.65
YBX3-218ENST00000546298 FERMT2Q96AC1 680 aa11.02□□□□□ -0.65
YBX3-218ENST00000546298 CHMP4CQ96CF2 233 aa11.02□□□□□ -0.65
YBX3-218ENST00000546298 TMEM47Q9BQJ4 181 aa11.02□□□□□ -0.65
YBX3-218ENST00000546298 CCPG1Q9ULG6 757 aa11.02□□□□□ -0.65
YBX3-218ENST00000546298 ZNF536O15090 1300 aa11.02□□□□□ -0.65
YBX3-218ENST00000546298 TRIOBPQ9H2D6 2365 aa11.02□□□□□ -0.65
YBX3-218ENST00000546298 ZNF236Q9UL36 1845 aa11.01□□□□□ -0.65
YBX3-218ENST00000546298 MOXD2PA6NHM9 499 aa11.01□□□□□ -0.65
YBX3-218ENST00000546298 ICAM1P05362 532 aa11.01□□□□□ -0.65
YBX3-218ENST00000546298 MDM2Q00987 491 aaPredicted RBP11.01□□□□□ -0.65
YBX3-218ENST00000546298 SYDE2Q5VT97 1194 aa11.01□□□□□ -0.65
YBX3-218ENST00000546298 GPR153Q6NV75 609 aa11.01□□□□□ -0.65
YBX3-218ENST00000546298 IQCA1Q86XH1 822 aa11.01□□□□□ -0.65
YBX3-218ENST00000546298 FAM133AQ8N9E0 248 aa11.01□□□□□ -0.65
YBX3-218ENST00000546298 PCSK9Q8NBP7 692 aaKnown RBP11.01□□□□□ -0.65
YBX3-218ENST00000546298 DSCC1Q9BVC3 393 aa11.01□□□□□ -0.65
YBX3-218ENST00000546298 A1CFQ9NQ94 594 aaKnown RBP11.01□□□□□ -0.65
YBX3-218ENST00000546298 TNRC18O15417 2968 aaPredicted RBP11.01□□□□□ -0.65
YBX3-218ENST00000546298 A0A0G2JMZ2 1700 aa11.01□□□□□ -0.65
YBX3-218ENST00000546298 MYH7P12883 1935 aa11□□□□□ -0.65
YBX3-218ENST00000546298 ADAMTS4O75173 837 aa11□□□□□ -0.65
YBX3-218ENST00000546298 CNTN2Q02246 1040 aa11□□□□□ -0.65
YBX3-218ENST00000546298 TLE2Q04725 743 aa11□□□□□ -0.65
YBX3-218ENST00000546298 IMMTQ16891 758 aaKnown RBP11□□□□□ -0.65
YBX3-218ENST00000546298 CCDC144BQ3MJ40 725 aa11□□□□□ -0.65
YBX3-218ENST00000546298 TRIM60Q495X7 471 aa11□□□□□ -0.65
YBX3-218ENST00000546298 GPATCH4Q5T3I0 446 aaKnown RBP11□□□□□ -0.65
YBX3-218ENST00000546298 TTBK2Q6IQ55 1244 aa11□□□□□ -0.65
YBX3-218ENST00000546298 NSMFQ6X4W1 530 aa11□□□□□ -0.65
YBX3-218ENST00000546298 NOL8Q76FK4 1167 aaKnown RBP11□□□□□ -0.65
YBX3-218ENST00000546298 TBC1D10CQ8IV04 446 aa11□□□□□ -0.65
YBX3-218ENST00000546298 CCDC144CPQ8IYA2 1237 aa11□□□□□ -0.65
YBX3-218ENST00000546298 FGD4Q96M96 766 aa11□□□□□ -0.65
YBX3-218ENST00000546298 KRT23Q9C075 422 aa11□□□□□ -0.65
YBX3-218ENST00000546298 RANBP17Q9H2T7 1088 aaKnown RBP11□□□□□ -0.65
YBX3-218ENST00000546298 GPCPD1Q9NPB8 672 aa11□□□□□ -0.65
YBX3-218ENST00000546298 PRDM5Q9NQX1 630 aaPredicted RBP11□□□□□ -0.65
YBX3-218ENST00000546298 STARD7Q9NQZ5 370 aa11□□□□□ -0.65
YBX3-218ENST00000546298 ADD3Q9UEY8 706 aaKnown RBP11□□□□□ -0.65
YBX3-218ENST00000546298 RLFQ13129 1914 aa10.99□□□□□ -0.65
YBX3-218ENST00000546298 A0A1W2PQ45 241 aaPredicted RBP10.99□□□□□ -0.65
YBX3-218ENST00000546298 A0A1W2PQY0 241 aa10.99□□□□□ -0.65
YBX3-218ENST00000546298 DCDC2CA8MYV0 355 aa10.99□□□□□ -0.65
YBX3-218ENST00000546298 SOX1O00570 391 aaPredicted RBP10.99□□□□□ -0.65
YBX3-218ENST00000546298 KDM4AO75164 1064 aa10.99□□□□□ -0.65
YBX3-218ENST00000546298 C6orf222P0C671 652 aaPredicted RBP10.99□□□□□ -0.65
YBX3-218ENST00000546298 PDHBP11177 359 aa10.99□□□□□ -0.65
YBX3-218ENST00000546298 CST5P28325 142 aaPredicted RBP10.99□□□□□ -0.65
YBX3-218ENST00000546298 SLC16A2P36021 539 aa10.99□□□□□ -0.65
YBX3-218ENST00000546298 ACLYP53396 1101 aa10.99□□□□□ -0.65
YBX3-218ENST00000546298 SNAP25P60880 206 aa10.99□□□□□ -0.65
YBX3-218ENST00000546298 ZNF543Q08ER8 600 aa10.99□□□□□ -0.65
YBX3-218ENST00000546298 GNASQ5JWF2 1037 aa10.99□□□□□ -0.65
YBX3-218ENST00000546298 KLHDC9Q8NEP7 349 aa10.99□□□□□ -0.65
YBX3-218ENST00000546298 RUFY2Q8WXA3 655 aa10.99□□□□□ -0.65
YBX3-218ENST00000546298 VTI1AQ96AJ9 217 aa10.99□□□□□ -0.65
YBX3-218ENST00000546298 GLT1D1Q96MS3 346 aa10.99□□□□□ -0.65
YBX3-218ENST00000546298 TOX2Q96NM4 488 aa10.99□□□□□ -0.65
YBX3-218ENST00000546298 MPHOSPH6Q99547 160 aaKnown RBP10.99□□□□□ -0.65
YBX3-218ENST00000546298 KAT14Q9H8E8 782 aa10.99□□□□□ -0.65
YBX3-218ENST00000546298 CNNM2Q9H8M5 875 aa10.99□□□□□ -0.65
YBX3-218ENST00000546298 CYP39A1Q9NYL5 469 aa10.99□□□□□ -0.65
YBX3-218ENST00000546298 FRMPD2Q68DX3 1309 aaPredicted RBP10.99□□□□□ -0.65
YBX3-218ENST00000546298 GREB1LQ9C091 1923 aaPredicted RBP10.99□□□□□ -0.65
YBX3-218ENST00000546298 LOC102724159A0A0B4J2E5 919 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms