RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 ZNF543Q08ER8 600 aa24.2■■□□□ 1.46
VPS28-206ENST00000526734 UBAC1Q9BSL1 405 aa24.2■■□□□ 1.46
VPS28-206ENST00000526734 RANBP17Q9H2T7 1088 aaKnown RBP24.2■■□□□ 1.46
VPS28-206ENST00000526734 KAT14Q9H8E8 782 aa24.2■■□□□ 1.46
VPS28-206ENST00000526734 RNF146Q9NTX7 359 aa24.2■■□□□ 1.46
VPS28-206ENST00000526734 CNPY2Q9Y2B0 182 aa24.2■■□□□ 1.46
VPS28-206ENST00000526734 EVI5O60447 810 aa24.19■■□□□ 1.46
VPS28-206ENST00000526734 ICAM1P05362 532 aa24.19■■□□□ 1.46
VPS28-206ENST00000526734 COL6A1P12109 1028 aa24.19■■□□□ 1.46
VPS28-206ENST00000526734 MAMDC4Q6UXC1 1216 aa24.19■■□□□ 1.46
VPS28-206ENST00000526734 ARRDC4Q8NCT1 418 aa24.19■■□□□ 1.46
VPS28-206ENST00000526734 PNMA1Q8ND90 353 aa24.19■■□□□ 1.46
VPS28-206ENST00000526734 ZSWIM5Q9P217 1185 aa24.19■■□□□ 1.46
VPS28-206ENST00000526734 TNKSO95271 1327 aa24.18■■□□□ 1.46
VPS28-206ENST00000526734 DNM1LO00429 736 aa24.18■■□□□ 1.46
VPS28-206ENST00000526734 BMP2KLQ5H9B9 411 aa24.18■■□□□ 1.46
VPS28-206ENST00000526734 RASGRP2Q7LDG7 609 aa24.18■■□□□ 1.46
VPS28-206ENST00000526734 CHMP4CQ96CF2 233 aa24.18■■□□□ 1.46
VPS28-206ENST00000526734 AGBL1Q96MI9 1066 aa24.18■■□□□ 1.46
VPS28-206ENST00000526734 ZKSCAN3Q9BRR0 538 aa24.18■■□□□ 1.46
VPS28-206ENST00000526734 HOMER2Q9NSB8 354 aa24.18■■□□□ 1.46
VPS28-206ENST00000526734 CCPG1Q9ULG6 757 aa24.18■■□□□ 1.46
VPS28-206ENST00000526734 FRMPD2Q68DX3 1309 aaPredicted RBP24.17■■□□□ 1.46
VPS28-206ENST00000526734 H0YGN5 161 aa24.17■■□□□ 1.46
VPS28-206ENST00000526734 ALAS1P13196 640 aa24.17■■□□□ 1.46
VPS28-206ENST00000526734 CCDC174Q6PII3 467 aa24.17■■□□□ 1.46
VPS28-206ENST00000526734 KIAA1211Q6ZU35 1233 aa24.17■■□□□ 1.46
VPS28-206ENST00000526734 ENAHQ8N8S7 591 aaPredicted RBP24.17■■□□□ 1.46
VPS28-206ENST00000526734 TRERF1Q96PN7 1200 aa24.17■■□□□ 1.46
VPS28-206ENST00000526734 GPCPD1Q9NPB8 672 aa24.17■■□□□ 1.46
VPS28-206ENST00000526734 WDR19Q8NEZ3 1342 aa24.16■■□□□ 1.46
VPS28-206ENST00000526734 ZNFX1Q9P2E3 1918 aaKnown RBP24.16■■□□□ 1.46
VPS28-206ENST00000526734 CYP21A2P08686 494 aa24.16■■□□□ 1.46
VPS28-206ENST00000526734 PTH1RQ03431 593 aa24.16■■□□□ 1.46
VPS28-206ENST00000526734 ASPRV1Q53RT3 343 aa24.16■■□□□ 1.46
VPS28-206ENST00000526734 TTBK2Q6IQ55 1244 aa24.16■■□□□ 1.46
VPS28-206ENST00000526734 MAP4K1Q92918 833 aa24.16■■□□□ 1.46
VPS28-206ENST00000526734 A1CFQ9NQ94 594 aaKnown RBP24.16■■□□□ 1.46
VPS28-206ENST00000526734 PLXNA1Q9UIW2 1896 aa24.15■■□□□ 1.46
VPS28-206ENST00000526734 FRMPD3Q5JV73 1810 aa24.15■■□□□ 1.46
VPS28-206ENST00000526734 POTEB2H3BUK9 544 aa24.15■■□□□ 1.46
VPS28-206ENST00000526734 AKR1A1P14550 325 aa24.15■■□□□ 1.46
VPS28-206ENST00000526734 SLC16A2P36021 539 aa24.15■■□□□ 1.46
VPS28-206ENST00000526734 RALYLQ86SE5 291 aaKnown RBP24.15■■□□□ 1.46
VPS28-206ENST00000526734 KBTBD13C9JR72 458 aa24.14■■□□□ 1.45
VPS28-206ENST00000526734 RARBP10826 455 aa24.14■■□□□ 1.45
VPS28-206ENST00000526734 PRAMEF19Q5SWL8 479 aa24.14■■□□□ 1.45
VPS28-206ENST00000526734 IFIT1BQ5T764 474 aaKnown RBP24.14■■□□□ 1.45
VPS28-206ENST00000526734 FAM133AQ8N9E0 248 aa24.14■■□□□ 1.45
VPS28-206ENST00000526734 ZNF865P0CJ78 1059 aaPredicted RBP24.13■■□□□ 1.45
VPS28-206ENST00000526734 NCOA7Q8NI08 942 aa24.13■■□□□ 1.45
VPS28-206ENST00000526734 CCDC136Q96JN2 1154 aa24.13■■□□□ 1.45
VPS28-206ENST00000526734 MAF1Q9H063 256 aa24.13■■□□□ 1.45
VPS28-206ENST00000526734 ABHD16BQ9H3Z7 469 aa24.13■■□□□ 1.45
VPS28-206ENST00000526734 FAM184BQ9ULE4 1060 aa24.13■■□□□ 1.45
VPS28-206ENST00000526734 ERICH2A1L162 156 aa24.12■■□□□ 1.45
VPS28-206ENST00000526734 ASB14A6NK59 587 aa24.12■■□□□ 1.45
VPS28-206ENST00000526734 NEFLP07196 543 aa24.12■■□□□ 1.45
VPS28-206ENST00000526734 SART3Q15020 963 aaKnown RBP24.12■■□□□ 1.45
VPS28-206ENST00000526734 FGD4Q96M96 766 aa24.12■■□□□ 1.45
VPS28-206ENST00000526734 ESYT1Q9BSJ8 1104 aa24.12■■□□□ 1.45
VPS28-206ENST00000526734 CDKN2AIPQ9NXV6 580 aaPredicted RBP24.12■■□□□ 1.45
VPS28-206ENST00000526734 CYP39A1Q9NYL5 469 aa24.12■■□□□ 1.45
VPS28-206ENST00000526734 RBM8AQ9Y5S9 174 aaKnown RBP24.12■■□□□ 1.45
VPS28-206ENST00000526734 LOC102724159A0A0B4J2E5 919 aa24.11■■□□□ 1.45
VPS28-206ENST00000526734 E7EWF7 191 aa24.11■■□□□ 1.45
VPS28-206ENST00000526734 SNAI1O95863 264 aaPredicted RBP24.11■■□□□ 1.45
VPS28-206ENST00000526734 SNAP25P60880 206 aa24.11■■□□□ 1.45
VPS28-206ENST00000526734 PWP2Q15269 919 aaKnown RBP24.11■■□□□ 1.45
VPS28-206ENST00000526734 SEC23AQ15436 765 aa24.11■■□□□ 1.45
VPS28-206ENST00000526734 CASC1Q6TDU7 716 aa24.11■■□□□ 1.45
VPS28-206ENST00000526734 XPNPEP3Q9NQH7 507 aa24.11■■□□□ 1.45
VPS28-206ENST00000526734 PARP1P09874 1014 aaKnown RBP24.1■■□□□ 1.45
VPS28-206ENST00000526734 MUM1L1Q5H9M0 696 aa24.1■■□□□ 1.45
VPS28-206ENST00000526734 NSMFQ6X4W1 530 aa24.1■■□□□ 1.45
VPS28-206ENST00000526734 CYB5R4Q7L1T6 521 aa24.1■■□□□ 1.45
VPS28-206ENST00000526734 ARMCX2Q7L311 632 aa24.1■■□□□ 1.45
VPS28-206ENST00000526734 RNF180Q86T96 592 aa24.1■■□□□ 1.45
VPS28-206ENST00000526734 ZHX1Q9UKY1 873 aaPredicted RBP24.1■■□□□ 1.45
VPS28-206ENST00000526734 TAL1P17542 331 aaPredicted RBP24.09■■□□□ 1.45
VPS28-206ENST00000526734 CNTN2Q02246 1040 aa24.09■■□□□ 1.45
VPS28-206ENST00000526734 ACVR2BQ13705 512 aa24.09■■□□□ 1.45
VPS28-206ENST00000526734 LRRC41Q15345 812 aa24.09■■□□□ 1.45
VPS28-206ENST00000526734 C7orf61Q8IZ16 206 aa24.09■■□□□ 1.45
VPS28-206ENST00000526734 MTA3Q9BTC8 594 aa24.09■■□□□ 1.45
VPS28-206ENST00000526734 SENP6Q9GZR1 1112 aaPredicted RBP24.09■■□□□ 1.45
VPS28-206ENST00000526734 ADD3Q9UEY8 706 aaKnown RBP24.09■■□□□ 1.45
VPS28-206ENST00000526734 IFIT3O14879 490 aaKnown RBP24.08■■□□□ 1.45
VPS28-206ENST00000526734 GOLGA8HP0CJ92 632 aa24.08■■□□□ 1.45
VPS28-206ENST00000526734 GJC2Q5T442 439 aaPredicted RBP24.08■■□□□ 1.45
VPS28-206ENST00000526734 ANO1Q5XXA6 986 aa24.08■■□□□ 1.45
VPS28-206ENST00000526734 CCDC144CPQ8IYA2 1237 aa24.08■■□□□ 1.45
VPS28-206ENST00000526734 LSG1Q9H089 658 aaKnown RBP24.08■■□□□ 1.45
VPS28-206ENST00000526734 SOWAHBA6NEL2 793 aa24.07■■□□□ 1.44
VPS28-206ENST00000526734 HABP4Q5JVS0 413 aaKnown RBP24.07■■□□□ 1.44
VPS28-206ENST00000526734 DUSP11O75319 330 aaKnown RBP24.06■■□□□ 1.44
VPS28-206ENST00000526734 WTAPQ15007 396 aa24.06■■□□□ 1.44
VPS28-206ENST00000526734 CDC37Q16543 378 aaPredicted RBP24.06■■□□□ 1.44
VPS28-206ENST00000526734 LRRC26Q2I0M4 334 aa24.06■■□□□ 1.44
VPS28-206ENST00000526734 ADGRF4Q8IZF3 695 aa24.06■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms