RNA–Protein interactions for RNA: ENST00000498808.5

HDAC6-236, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-236ENST00000498808 PRRC2BQ5JSZ5 2229 aaKnown RBP18.81■□□□□ 0.6
HDAC6-236ENST00000498808 MYOGP15173 224 aa18.8■□□□□ 0.6
HDAC6-236ENST00000498808 NKX3-2P78367 333 aa18.8■□□□□ 0.6
HDAC6-236ENST00000498808 BEX3Q00994 111 aa18.8■□□□□ 0.6
HDAC6-236ENST00000498808 PPP2R2DQ66LE6 453 aa18.8■□□□□ 0.6
HDAC6-236ENST00000498808 CEP85Q6P2H3 762 aa18.8■□□□□ 0.6
HDAC6-236ENST00000498808 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.8■□□□□ 0.6
HDAC6-236ENST00000498808 ARMCX2Q7L311 632 aa18.8■□□□□ 0.6
HDAC6-236ENST00000498808 ERC1Q8IUD2 1116 aa18.8■□□□□ 0.6
HDAC6-236ENST00000498808 ASTN1O14525 1302 aa18.79■□□□□ 0.6
HDAC6-236ENST00000498808 ATP2A1O14983 1001 aa18.79■□□□□ 0.6
HDAC6-236ENST00000498808 ADD2P35612 726 aa18.79■□□□□ 0.6
HDAC6-236ENST00000498808 SLC4A3P48751 1232 aa18.79■□□□□ 0.6
HDAC6-236ENST00000498808 CCL23P55773 120 aa18.79■□□□□ 0.6
HDAC6-236ENST00000498808 CXCL17Q6UXB2 119 aa18.79■□□□□ 0.6
HDAC6-236ENST00000498808 CPXCR1Q8N123 301 aa18.79■□□□□ 0.6
HDAC6-236ENST00000498808 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.79■□□□□ 0.6
HDAC6-236ENST00000498808 VWCEQ96DN2 955 aa18.79■□□□□ 0.6
HDAC6-236ENST00000498808 ZBED9Q6R2W3 1325 aa18.78■□□□□ 0.6
HDAC6-236ENST00000498808 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.78■□□□□ 0.6
HDAC6-236ENST00000498808 CHGBP05060 677 aa18.78■□□□□ 0.6
HDAC6-236ENST00000498808 RHPN1Q8TCX5 695 aa18.78■□□□□ 0.6
HDAC6-236ENST00000498808 LRFN3Q9BTN0 628 aa18.78■□□□□ 0.6
HDAC6-236ENST00000498808 NOC4LQ9BVI4 516 aaKnown RBP18.78■□□□□ 0.6
HDAC6-236ENST00000498808 WNT8AQ9H1J5 351 aa18.78■□□□□ 0.6
HDAC6-236ENST00000498808 EPHX3Q9H6B9 360 aa18.78■□□□□ 0.6
HDAC6-236ENST00000498808 GRIN2DO15399 1336 aa18.77■□□□□ 0.6
HDAC6-236ENST00000498808 ERC2O15083 957 aa18.77■□□□□ 0.6
HDAC6-236ENST00000498808 NDUFB10O96000 172 aa18.77■□□□□ 0.6
HDAC6-236ENST00000498808 RLBP1P12271 317 aa18.77■□□□□ 0.6
HDAC6-236ENST00000498808 AAK1Q2M2I8 961 aa18.77■□□□□ 0.6
HDAC6-236ENST00000498808 ITPRIPQ8IWB1 547 aa18.77■□□□□ 0.6
HDAC6-236ENST00000498808 CCDC144CPQ8IYA2 1237 aa18.77■□□□□ 0.6
HDAC6-236ENST00000498808 ANKRD35Q8N283 1001 aa18.77■□□□□ 0.6
HDAC6-236ENST00000498808 PRPF38AQ8NAV1 312 aaKnown RBP18.77■□□□□ 0.6
HDAC6-236ENST00000498808 RAVER2Q9HCJ3 691 aaKnown RBP18.77■□□□□ 0.6
HDAC6-236ENST00000498808 ARIH1Q9Y4X5 557 aaPredicted RBP18.77■□□□□ 0.6
HDAC6-236ENST00000498808 PCDHA11Q9Y5I1 949 aa18.77■□□□□ 0.6
HDAC6-236ENST00000498808 SLC4A7Q9Y6M7 1214 aa18.77■□□□□ 0.6
HDAC6-236ENST00000498808 F5H6K3 240 aa18.76■□□□□ 0.59
HDAC6-236ENST00000498808 RFXAPO00287 272 aa18.76■□□□□ 0.59
HDAC6-236ENST00000498808 PTGS1P23219 599 aa18.76■□□□□ 0.59
HDAC6-236ENST00000498808 KLRC3Q07444 240 aa18.76■□□□□ 0.59
HDAC6-236ENST00000498808 SKIV2LQ15477 1246 aaKnown RBP18.76■□□□□ 0.59
HDAC6-236ENST00000498808 CTR9Q6PD62 1173 aa18.76■□□□□ 0.59
HDAC6-236ENST00000498808 AMOTL1Q8IY63 956 aa18.76■□□□□ 0.59
HDAC6-236ENST00000498808 MTCH2Q9Y6C9 303 aa18.76■□□□□ 0.59
HDAC6-236ENST00000498808 LRRC37A2A6NM11 1700 aa18.75■□□□□ 0.59
HDAC6-236ENST00000498808 B4GALT4O60513 344 aa18.75■□□□□ 0.59
HDAC6-236ENST00000498808 ITGA7Q13683 1181 aa18.75■□□□□ 0.59
HDAC6-236ENST00000498808 TRPV6Q9H1D0 765 aa18.75■□□□□ 0.59
HDAC6-236ENST00000498808 SLC38A10Q9HBR0 1119 aa18.75■□□□□ 0.59
HDAC6-236ENST00000498808 GNEQ9Y223 722 aaKnown RBP18.75■□□□□ 0.59
HDAC6-236ENST00000498808 ZBED4O75132 1171 aa18.74■□□□□ 0.59
HDAC6-236ENST00000498808 CABYRO75952 493 aa18.74■□□□□ 0.59
HDAC6-236ENST00000498808 ATP2A2P16615 1042 aaKnown RBP18.74■□□□□ 0.59
HDAC6-236ENST00000498808 POU3F3P20264 500 aaPredicted RBP18.74■□□□□ 0.59
HDAC6-236ENST00000498808 CNTN2Q02246 1040 aa18.74■□□□□ 0.59
HDAC6-236ENST00000498808 TNFAIP2Q03169 654 aa18.74■□□□□ 0.59
HDAC6-236ENST00000498808 TLK2Q86UE8 772 aa18.74■□□□□ 0.59
HDAC6-236ENST00000498808 FTSJ3Q8IY81 847 aaKnown RBP18.74■□□□□ 0.59
HDAC6-236ENST00000498808 CHST13Q8NET6 341 aa18.74■□□□□ 0.59
HDAC6-236ENST00000498808 KIFC2Q96AC6 838 aa18.74■□□□□ 0.59
HDAC6-236ENST00000498808 SCLYQ96I15 445 aa18.74■□□□□ 0.59
HDAC6-236ENST00000498808 PAG1Q9NWQ8 432 aa18.74■□□□□ 0.59
HDAC6-236ENST00000498808 NYAP2Q9P242 653 aa18.74■□□□□ 0.59
HDAC6-236ENST00000498808 FBXO40Q9UH90 709 aa18.74■□□□□ 0.59
HDAC6-236ENST00000498808 HCN4Q9Y3Q4 1203 aa18.74■□□□□ 0.59
HDAC6-236ENST00000498808 SLC4A4Q9Y6R1 1079 aa18.74■□□□□ 0.59
HDAC6-236ENST00000498808 MYH7P12883 1935 aa18.73■□□□□ 0.59
HDAC6-236ENST00000498808 MYH4Q9Y623 1939 aa18.73■□□□□ 0.59
HDAC6-236ENST00000498808 TRANK1O15050 2925 aa18.73■□□□□ 0.59
HDAC6-236ENST00000498808 EPOPA6NHQ4 379 aa18.73■□□□□ 0.59
HDAC6-236ENST00000498808 ZBBXA8MT70 800 aa18.73■□□□□ 0.59
HDAC6-236ENST00000498808 RASA1P20936 1047 aa18.73■□□□□ 0.59
HDAC6-236ENST00000498808 FSCN1Q16658 493 aaKnown RBP18.73■□□□□ 0.59
HDAC6-236ENST00000498808 KRT40Q6A162 431 aa18.73■□□□□ 0.59
HDAC6-236ENST00000498808 NOL8Q76FK4 1167 aaKnown RBP18.73■□□□□ 0.59
HDAC6-236ENST00000498808 RPUSD2Q8IZ73 545 aaKnown RBP18.73■□□□□ 0.59
HDAC6-236ENST00000498808 CLASRPQ8N2M8 674 aaKnown RBP18.73■□□□□ 0.59
HDAC6-236ENST00000498808 FAM133AQ8N9E0 248 aa18.73■□□□□ 0.59
HDAC6-236ENST00000498808 DDRGK1Q96HY6 314 aa18.73■□□□□ 0.59
HDAC6-236ENST00000498808 AGBL1Q96MI9 1066 aa18.73■□□□□ 0.59
HDAC6-236ENST00000498808 CA3P07451 260 aa18.72■□□□□ 0.59
HDAC6-236ENST00000498808 PSMC6P62333 389 aa18.72■□□□□ 0.59
HDAC6-236ENST00000498808 TTLL4Q14679 1199 aa18.72■□□□□ 0.59
HDAC6-236ENST00000498808 HSP90AB4PQ58FF6 505 aa18.72■□□□□ 0.59
HDAC6-236ENST00000498808 BOLA2Q9H3K6 86 aa18.72■□□□□ 0.59
HDAC6-236ENST00000498808 CERS4Q9HA82 394 aa18.72■□□□□ 0.59
HDAC6-236ENST00000498808 CTDP1Q9Y5B0 961 aaPredicted RBP18.72■□□□□ 0.59
HDAC6-236ENST00000498808 SCN5AQ14524 2016 aa18.71■□□□□ 0.59
HDAC6-236ENST00000498808 SOWAHBA6NEL2 793 aa18.71■□□□□ 0.59
HDAC6-236ENST00000498808 TLL1O43897 1013 aa18.71■□□□□ 0.59
HDAC6-236ENST00000498808 IFIT2P09913 472 aaKnown RBP18.71■□□□□ 0.59
HDAC6-236ENST00000498808 SMPD1P17405 629 aa18.71■□□□□ 0.59
HDAC6-236ENST00000498808 OAZ1P54368 228 aa18.71■□□□□ 0.59
HDAC6-236ENST00000498808 UBE3CQ15386 1083 aa18.71■□□□□ 0.59
HDAC6-236ENST00000498808 TMEM67Q5HYA8 995 aa18.71■□□□□ 0.59
HDAC6-236ENST00000498808 TMEM31Q5JXX7 168 aa18.71■□□□□ 0.59
HDAC6-236ENST00000498808 KHSRPQ92945 711 aaKnown RBP eCLIP18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms