RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 NFIXQ14938 502 aa12.24□□□□□ -0.45
HDAC6-228ENST00000486227 ZNF526Q8TF50 670 aaPredicted RBP12.24□□□□□ -0.45
HDAC6-228ENST00000486227 FAM84BQ96KN1 310 aaPredicted RBP12.24□□□□□ -0.45
HDAC6-228ENST00000486227 CCDC113Q9H0I3 377 aa12.24□□□□□ -0.45
HDAC6-228ENST00000486227 GSG1L2A8MUP6 293 aa12.24□□□□□ -0.45
HDAC6-228ENST00000486227 CDC25AP30304 524 aa12.24□□□□□ -0.45
HDAC6-228ENST00000486227 C11orf57Q6ZUT1 292 aaPredicted RBP12.24□□□□□ -0.45
HDAC6-228ENST00000486227 KCTD1Q719H9 257 aa12.24□□□□□ -0.45
HDAC6-228ENST00000486227 EEF2KMTQ96G04 330 aa12.24□□□□□ -0.45
HDAC6-228ENST00000486227 KAZALD1Q96I82 304 aa12.24□□□□□ -0.45
HDAC6-228ENST00000486227 SPC25Q9HBM1 224 aa12.24□□□□□ -0.45
HDAC6-228ENST00000486227 CD209Q9NNX6 404 aa12.24□□□□□ -0.45
HDAC6-228ENST00000486227 PCDHB6Q9Y5E3 794 aa12.24□□□□□ -0.45
HDAC6-228ENST00000486227 PRPF3O43395 683 aaKnown RBP12.23□□□□□ -0.45
HDAC6-228ENST00000486227 TTLL1O95922 423 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 EN1Q05925 392 aaPredicted RBP12.23□□□□□ -0.45
HDAC6-228ENST00000486227 NKX1-1Q15270 411 aaPredicted RBP12.23□□□□□ -0.45
HDAC6-228ENST00000486227 CIAPIN1Q6FI81 312 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 TPH2Q8IWU9 490 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 PIGSQ96S52 555 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 TAOK3Q9H2K8 898 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 PCDHA4Q9UN74 947 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 PXDNLA1KZ92 1463 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 RIMS1Q86UR5 1692 aaKnown RBP12.23□□□□□ -0.45
HDAC6-228ENST00000486227 CAMTA2O94983 1202 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 GDF11O95390 407 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 CDK8P49336 464 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 GPATCH4Q5T3I0 446 aaKnown RBP12.23□□□□□ -0.45
HDAC6-228ENST00000486227 GRAMD1CQ8IYS0 662 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 MYCT1Q8N699 235 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 PLCD4Q9BRC7 762 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 NT5C3AQ9H0P0 336 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.23□□□□□ -0.45
HDAC6-228ENST00000486227 UTYO14607 1347 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 GTPBP6O43824 516 aaPredicted RBP12.23□□□□□ -0.45
HDAC6-228ENST00000486227 CTNNA2P26232 953 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 LONP1P36776 959 aaKnown RBP12.23□□□□□ -0.45
HDAC6-228ENST00000486227 ITPK1Q13572 414 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 CYP26C1Q6V0L0 522 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 GADL1Q6ZQY3 521 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 TRIML1Q8N9V2 468 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 ZBTB9Q96C00 473 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 NAPGQ99747 312 aaPredicted RBP12.23□□□□□ -0.45
HDAC6-228ENST00000486227 COA1Q9GZY4 146 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 BCCIPQ9P287 314 aaKnown RBP eCLIP12.23□□□□□ -0.45
HDAC6-228ENST00000486227 RPAP1Q9BWH6 1393 aaPredicted RBP12.23□□□□□ -0.45
HDAC6-228ENST00000486227 TRAPPC10P48553 1259 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 ARHGEF6Q15052 776 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 LONRF3Q496Y0 759 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 ASPRV1Q53RT3 343 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 FBXO38Q6PIJ6 1188 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 AZI2Q9H6S1 392 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 SWAP70Q9UH65 585 aa12.23□□□□□ -0.45
HDAC6-228ENST00000486227 GAS7O60861 476 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 ALAS1P13196 640 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 TSGA10IPQ3SY00 556 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 POTEDQ86YR6 584 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 COA7Q96BR5 231 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 PGBD1Q96JS3 809 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 DCP1AQ9NPI6 582 aaPredicted RBP12.22□□□□□ -0.45
HDAC6-228ENST00000486227 DDX25Q9UHL0 483 aaKnown RBP12.22□□□□□ -0.45
HDAC6-228ENST00000486227 PNMA2Q9UL42 364 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 ZNF609O15014 1411 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 C21orf2O43822 256 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 MAATS1Q7Z4T9 603 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 SLC44A5Q8NCS7 719 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 RGS22Q8NE09 1264 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 ITSN1Q15811 1721 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 GCNT3O95395 438 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 HARSP12081 509 aaKnown RBP12.22□□□□□ -0.45
HDAC6-228ENST00000486227 ZRSR2Q15696 482 aaKnown RBP12.22□□□□□ -0.45
HDAC6-228ENST00000486227 ALX1Q15699 326 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 GBP6Q6ZN66 633 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 GPBP1Q86WP2 473 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 TMTC1Q8IUR5 882 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 MORC2Q9Y6X9 1032 aaPredicted RBP12.22□□□□□ -0.45
HDAC6-228ENST00000486227 COBLO75128 1261 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 RPN1P04843 607 aaKnown RBP12.22□□□□□ -0.45
HDAC6-228ENST00000486227 DGKHQ86XP1 1220 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 PPP1R13BQ96KQ4 1090 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 SELENOOQ9BVL4 669 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 SYNCQ9H7C4 482 aa12.22□□□□□ -0.45
HDAC6-228ENST00000486227 MRPL44Q9H9J2 332 aaKnown RBP12.22□□□□□ -0.45
HDAC6-228ENST00000486227 A6NNZ2 444 aa12.21□□□□□ -0.45
HDAC6-228ENST00000486227 NMT2O60551 498 aa12.21□□□□□ -0.45
HDAC6-228ENST00000486227 KIF4AO95239 1232 aa12.21□□□□□ -0.45
HDAC6-228ENST00000486227 CACNB3P54284 484 aa12.21□□□□□ -0.45
HDAC6-228ENST00000486227 MORC3Q14149 939 aa12.21□□□□□ -0.45
HDAC6-228ENST00000486227 KIAA0753Q2KHM9 967 aa12.21□□□□□ -0.45
HDAC6-228ENST00000486227 TUBB8Q3ZCM7 444 aa12.21□□□□□ -0.45
HDAC6-228ENST00000486227 SLF1Q9BQI6 1058 aa12.21□□□□□ -0.45
HDAC6-228ENST00000486227 KANSL2Q9H9L4 492 aa12.21□□□□□ -0.45
HDAC6-228ENST00000486227 LY9Q9HBG7 655 aa12.21□□□□□ -0.45
HDAC6-228ENST00000486227 FAM207AQ9NSI2 230 aaPredicted RBP12.21□□□□□ -0.45
HDAC6-228ENST00000486227 KCNJ18B7U540 433 aa12.21□□□□□ -0.45
HDAC6-228ENST00000486227 SMTNP53814 917 aa12.21□□□□□ -0.45
HDAC6-228ENST00000486227 KCNJ12Q14500 433 aa12.21□□□□□ -0.45
HDAC6-228ENST00000486227 B4GALNT4Q76KP1 1039 aa12.21□□□□□ -0.45
HDAC6-228ENST00000486227 ATRIPQ8WXE1 791 aa12.21□□□□□ -0.45
HDAC6-228ENST00000486227 AMNQ9BXJ7 453 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms