RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 FERMT2Q96AC1 680 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 SETDB2Q96T68 719 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 EPB41L4AQ9HCS5 686 aaPredicted RBP13.28□□□□□ -0.28
HMGB1-206ENST00000405805 MKRN1Q9UHC7 482 aaKnown RBP13.28□□□□□ -0.28
HMGB1-206ENST00000405805 SAMM50Q9Y512 469 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 HSF2BPO75031 334 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 RNF40O75150 1001 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 SETSIPP0DME0 302 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 ERCC5P28715 1186 aaPredicted RBP13.28□□□□□ -0.28
HMGB1-206ENST00000405805 PNMA8AQ86V59 439 aaPredicted RBP13.28□□□□□ -0.28
HMGB1-206ENST00000405805 SUDS3Q9H7L9 328 aaPredicted RBP13.28□□□□□ -0.28
HMGB1-206ENST00000405805 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.28□□□□□ -0.28
HMGB1-206ENST00000405805 MST1RQ04912 1400 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 BMP6P22004 513 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 MAP3K9P80192 1104 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 KLHL7Q8IXQ5 586 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 HPS3Q969F9 1004 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 PPP1R12CQ9BZL4 782 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 FBXO3Q9UK99 471 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 G3BP2Q9UN86 482 aaKnown RBP13.28□□□□□ -0.28
HMGB1-206ENST00000405805 CYP19A1P11511 503 aaPredicted RBP13.27□□□□□ -0.28
HMGB1-206ENST00000405805 LIFRP42702 1097 aa13.27□□□□□ -0.28
HMGB1-206ENST00000405805 FCHSD1Q86WN1 690 aa13.27□□□□□ -0.28
HMGB1-206ENST00000405805 NKX2-3Q8TAU0 364 aa13.27□□□□□ -0.28
HMGB1-206ENST00000405805 SMCR8Q8TEV9 937 aaPredicted RBP13.27□□□□□ -0.28
HMGB1-206ENST00000405805 TRIM6Q9C030 488 aaPredicted RBP13.27□□□□□ -0.28
HMGB1-206ENST00000405805 NUCKS1Q9H1E3 243 aaKnown RBP13.27□□□□□ -0.28
HMGB1-206ENST00000405805 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.27□□□□□ -0.28
HMGB1-206ENST00000405805 PALLDQ8WX93 1383 aa13.27□□□□□ -0.29
HMGB1-206ENST00000405805 TRAF5O00463 557 aa13.27□□□□□ -0.29
HMGB1-206ENST00000405805 GNPATO15228 680 aa13.27□□□□□ -0.29
HMGB1-206ENST00000405805 KCNQ2O43526 872 aa13.27□□□□□ -0.29
HMGB1-206ENST00000405805 MAGEA1P43355 309 aa13.27□□□□□ -0.29
HMGB1-206ENST00000405805 TOB1P50616 345 aaPredicted RBP13.27□□□□□ -0.29
HMGB1-206ENST00000405805 MAP2K1Q02750 393 aaPredicted RBP13.27□□□□□ -0.29
HMGB1-206ENST00000405805 NEDD9Q14511 834 aa13.27□□□□□ -0.29
HMGB1-206ENST00000405805 LRRC41Q15345 812 aa13.27□□□□□ -0.29
HMGB1-206ENST00000405805 DIXDC1Q155Q3 683 aa13.27□□□□□ -0.29
HMGB1-206ENST00000405805 KRT26Q7Z3Y9 468 aa13.27□□□□□ -0.29
HMGB1-206ENST00000405805 MAPKAPK5Q8IW41 473 aa13.27□□□□□ -0.29
HMGB1-206ENST00000405805 NLRP3Q96P20 1036 aa13.27□□□□□ -0.29
HMGB1-206ENST00000405805 TRIM31Q9BZY9 425 aa13.27□□□□□ -0.29
HMGB1-206ENST00000405805 RIPOR2Q9Y4F9 1068 aa13.27□□□□□ -0.29
HMGB1-206ENST00000405805 BUB1BO60566 1050 aaPredicted RBP13.27□□□□□ -0.29
HMGB1-206ENST00000405805 CD44P16070 742 aaKnown RBP13.27□□□□□ -0.29
HMGB1-206ENST00000405805 MCM3P25205 808 aa13.27□□□□□ -0.29
HMGB1-206ENST00000405805 CASP7P55210 303 aa13.27□□□□□ -0.29
HMGB1-206ENST00000405805 ZFYVE27Q5T4F4 411 aa13.27□□□□□ -0.29
HMGB1-206ENST00000405805 TRIML1Q8N9V2 468 aa13.27□□□□□ -0.29
HMGB1-206ENST00000405805 PSMD1Q99460 953 aa13.27□□□□□ -0.29
HMGB1-206ENST00000405805 IFIH1Q9BYX4 1025 aaKnown RBP13.27□□□□□ -0.29
HMGB1-206ENST00000405805 ZNF185O15231 689 aa13.26□□□□□ -0.29
HMGB1-206ENST00000405805 NDUFA10O95299 355 aa13.26□□□□□ -0.29
HMGB1-206ENST00000405805 CALML3P27482 149 aa13.26□□□□□ -0.29
HMGB1-206ENST00000405805 RAPGEF1Q13905 1077 aa13.26□□□□□ -0.29
HMGB1-206ENST00000405805 TBC1D31Q96DN5 1066 aa13.26□□□□□ -0.29
HMGB1-206ENST00000405805 DYNLL2Q96FJ2 89 aa13.26□□□□□ -0.29
HMGB1-206ENST00000405805 GSDMAQ96QA5 445 aa13.26□□□□□ -0.29
HMGB1-206ENST00000405805 SPAG5Q96R06 1193 aa13.26□□□□□ -0.29
HMGB1-206ENST00000405805 PNKPQ96T60 521 aa13.26□□□□□ -0.29
HMGB1-206ENST00000405805 BIN2Q9UBW5 565 aaPredicted RBP13.26□□□□□ -0.29
HMGB1-206ENST00000405805 TTC26A0AVF1 554 aa13.26□□□□□ -0.29
HMGB1-206ENST00000405805 SCG2P13521 617 aa13.26□□□□□ -0.29
HMGB1-206ENST00000405805 EHBP1Q8NDI1 1231 aa13.26□□□□□ -0.29
HMGB1-206ENST00000405805 BCAS4Q8TDM0 211 aa13.26□□□□□ -0.29
HMGB1-206ENST00000405805 KANSL2Q9H9L4 492 aa13.26□□□□□ -0.29
HMGB1-206ENST00000405805 ABL1P00519 1130 aa13.26□□□□□ -0.29
HMGB1-206ENST00000405805 PRCPP42785 496 aa13.26□□□□□ -0.29
HMGB1-206ENST00000405805 RBM5P52756 815 aaKnown RBP eCLIP13.26□□□□□ -0.29
HMGB1-206ENST00000405805 SRLQ86TD4 932 aa13.26□□□□□ -0.29
HMGB1-206ENST00000405805 POTEDQ86YR6 584 aa13.26□□□□□ -0.29
HMGB1-206ENST00000405805 TUBGCP2Q9BSJ2 902 aa13.26□□□□□ -0.29
HMGB1-206ENST00000405805 NAA15Q9BXJ9 866 aaKnown RBP13.26□□□□□ -0.29
HMGB1-206ENST00000405805 GPCPD1Q9NPB8 672 aa13.26□□□□□ -0.29
HMGB1-206ENST00000405805 LUC7LQ9NQ29 371 aaKnown RBP13.26□□□□□ -0.29
HMGB1-206ENST00000405805 SMARCAL1Q9NZC9 954 aa13.26□□□□□ -0.29
HMGB1-206ENST00000405805 AMPD3Q01432 767 aa13.25□□□□□ -0.29
HMGB1-206ENST00000405805 ENAHQ8N8S7 591 aaPredicted RBP13.25□□□□□ -0.29
HMGB1-206ENST00000405805 TSG101Q99816 390 aa13.25□□□□□ -0.29
HMGB1-206ENST00000405805 TLDC2A0PJX2 215 aa13.25□□□□□ -0.29
HMGB1-206ENST00000405805 H3BQF6 201 aa13.25□□□□□ -0.29
HMGB1-206ENST00000405805 CALM1P0DP23 149 aa13.25□□□□□ -0.29
HMGB1-206ENST00000405805 CALM2P0DP24 149 aa13.25□□□□□ -0.29
HMGB1-206ENST00000405805 CALM3P0DP25 149 aa13.25□□□□□ -0.29
HMGB1-206ENST00000405805 IL6STP40189 918 aaPredicted RBP13.25□□□□□ -0.29
HMGB1-206ENST00000405805 BLIDQ8IZY5 108 aa13.25□□□□□ -0.29
HMGB1-206ENST00000405805 INTS13Q9NVM9 706 aa13.25□□□□□ -0.29
HMGB1-206ENST00000405805 WTIPA6NIX2 430 aaPredicted RBP13.25□□□□□ -0.29
HMGB1-206ENST00000405805 C6orf229H3BNL8 230 aa13.25□□□□□ -0.29
HMGB1-206ENST00000405805 HGSO14964 777 aaPredicted RBP13.25□□□□□ -0.29
HMGB1-206ENST00000405805 IFFO1Q0D2I5 559 aa13.25□□□□□ -0.29
HMGB1-206ENST00000405805 KCTD19Q17RG1 926 aaPredicted RBP13.25□□□□□ -0.29
HMGB1-206ENST00000405805 TMEM266Q2M3C6 531 aa13.25□□□□□ -0.29
HMGB1-206ENST00000405805 EARS2Q5JPH6 523 aaKnown RBP13.25□□□□□ -0.29
HMGB1-206ENST00000405805 C8orf74Q6P047 294 aa13.25□□□□□ -0.29
HMGB1-206ENST00000405805 TGFBRAP1Q8WUH2 860 aa13.25□□□□□ -0.29
HMGB1-206ENST00000405805 ABHD10Q9NUJ1 306 aa13.25□□□□□ -0.29
HMGB1-206ENST00000405805 ZNF219Q9P2Y4 722 aaPredicted RBP13.25□□□□□ -0.29
HMGB1-206ENST00000405805 UBAP1LF5GYI3 381 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 USP17L8P0C7I0 530 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms