RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 RPS6KA4O75676 772 aa20.62■□□□□ 0.89
USP48-204ENST00000400301 SSR1P43307 286 aaKnown RBP20.62■□□□□ 0.89
USP48-204ENST00000400301 OGFOD1Q8N543 542 aa20.62■□□□□ 0.89
USP48-204ENST00000400301 DISC1Q9NRI5 854 aa20.62■□□□□ 0.89
USP48-204ENST00000400301 MFAP3LO75121 409 aa20.62■□□□□ 0.89
USP48-204ENST00000400301 GRIN1Q05586 938 aa20.62■□□□□ 0.89
USP48-204ENST00000400301 TBC1D5Q92609 795 aa20.62■□□□□ 0.89
USP48-204ENST00000400301 AK8Q96MA6 479 aa20.62■□□□□ 0.89
USP48-204ENST00000400301 GDAP1L1Q96MZ0 367 aa20.62■□□□□ 0.89
USP48-204ENST00000400301 CUEDC2Q9H467 287 aa20.62■□□□□ 0.89
USP48-204ENST00000400301 PSTPIP2Q9H939 334 aa20.62■□□□□ 0.89
USP48-204ENST00000400301 NARFQ9UHQ1 456 aa20.62■□□□□ 0.89
USP48-204ENST00000400301 FMR1Q06787 632 aaKnown RBP eCLIP20.62■□□□□ 0.891e-6■■□□□ 13.3
USP48-204ENST00000400301 USH1GQ495M9 461 aa20.62■□□□□ 0.89
USP48-204ENST00000400301 MYOCDQ8IZQ8 938 aa20.62■□□□□ 0.89
USP48-204ENST00000400301 P2RX5Q93086 422 aa20.62■□□□□ 0.89
USP48-204ENST00000400301 DHTKD1Q96HY7 919 aaPredicted RBP20.62■□□□□ 0.89
USP48-204ENST00000400301 CCDC172P0C7W6 258 aa20.61■□□□□ 0.89
USP48-204ENST00000400301 RNASE9P60153 205 aaKnown RBP20.61■□□□□ 0.89
USP48-204ENST00000400301 PTPAQ15257 358 aa20.61■□□□□ 0.89
USP48-204ENST00000400301 NOX5Q96PH1 765 aa20.61■□□□□ 0.89
USP48-204ENST00000400301 VEZTQ9HBM0 779 aa20.61■□□□□ 0.89
USP48-204ENST00000400301 ENC1O14682 589 aa20.61■□□□□ 0.89
USP48-204ENST00000400301 PLCG1P19174 1290 aa20.61■□□□□ 0.89
USP48-204ENST00000400301 MAPK8IP2Q13387 824 aaPredicted RBP20.61■□□□□ 0.89
USP48-204ENST00000400301 SRBD1Q8N5C6 995 aaKnown RBP20.61■□□□□ 0.89
USP48-204ENST00000400301 MAGEF1Q9HAY2 307 aa20.61■□□□□ 0.89
USP48-204ENST00000400301 OPA1O60313 960 aa20.61■□□□□ 0.89
USP48-204ENST00000400301 IVLP07476 585 aa20.61■□□□□ 0.89
USP48-204ENST00000400301 KRT13P13646 458 aa20.61■□□□□ 0.89
USP48-204ENST00000400301 DOK7Q18PE1 504 aa20.61■□□□□ 0.89
USP48-204ENST00000400301 KMT5BQ4FZB7 885 aa20.61■□□□□ 0.89
USP48-204ENST00000400301 ILDR1Q86SU0 546 aaPredicted RBP20.61■□□□□ 0.89
USP48-204ENST00000400301 NBPF11Q86T75 865 aa20.61■□□□□ 0.89
USP48-204ENST00000400301 CHMP2AO43633 222 aa20.6■□□□□ 0.89
USP48-204ENST00000400301 NTSR2O95665 410 aa20.6■□□□□ 0.89
USP48-204ENST00000400301 GRAPQ13588 217 aa20.6■□□□□ 0.89
USP48-204ENST00000400301 DNAJC21Q5F1R6 531 aaKnown RBP20.6■□□□□ 0.89
USP48-204ENST00000400301 TCP11X2Q5H9J9 407 aa20.6■□□□□ 0.89
USP48-204ENST00000400301 GRAPLQ8TC17 118 aaPredicted RBP20.6■□□□□ 0.89
USP48-204ENST00000400301 TEKT1Q969V4 418 aa20.6■□□□□ 0.89
USP48-204ENST00000400301 NSUN4Q96CB9 384 aaKnown RBP20.6■□□□□ 0.89
USP48-204ENST00000400301 NT5C3AQ9H0P0 336 aa20.6■□□□□ 0.89
USP48-204ENST00000400301 COA7Q96BR5 231 aa20.6■□□□□ 0.89
USP48-204ENST00000400301 CDK8P49336 464 aa20.6■□□□□ 0.89
USP48-204ENST00000400301 PLS1Q14651 629 aa20.6■□□□□ 0.89
USP48-204ENST00000400301 DNM3Q9UQ16 869 aa20.6■□□□□ 0.89
USP48-204ENST00000400301 DMTNQ08495 405 aa20.59■□□□□ 0.89
USP48-204ENST00000400301 ITPK1Q13572 414 aa20.59■□□□□ 0.89
USP48-204ENST00000400301 DDX41Q9UJV9 622 aaKnown RBP20.59■□□□□ 0.89
USP48-204ENST00000400301 C8orf74Q6P047 294 aa20.59■□□□□ 0.89
USP48-204ENST00000400301 TMEM47Q9BQJ4 181 aa20.59■□□□□ 0.89
USP48-204ENST00000400301 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.59■□□□□ 0.89
USP48-204ENST00000400301 ORC4O43929 436 aa20.59■□□□□ 0.89
USP48-204ENST00000400301 FBXL16Q8N461 479 aa20.59■□□□□ 0.89
USP48-204ENST00000400301 CCDC113Q9H0I3 377 aa20.59■□□□□ 0.89
USP48-204ENST00000400301 GPBP1Q86WP2 473 aa20.59■□□□□ 0.89
USP48-204ENST00000400301 LARP4BQ92615 738 aaKnown RBP20.59■□□□□ 0.89
USP48-204ENST00000400301 PARD6BQ9BYG5 372 aa20.59■□□□□ 0.89
USP48-204ENST00000400301 FAM107BQ9H098 131 aa20.59■□□□□ 0.89
USP48-204ENST00000400301 DDX25Q9UHL0 483 aaKnown RBP20.59■□□□□ 0.89
USP48-204ENST00000400301 EPB41P11171 864 aaKnown RBP20.58■□□□□ 0.89
USP48-204ENST00000400301 ATP2C1P98194 919 aaPredicted RBP20.58■□□□□ 0.89
USP48-204ENST00000400301 KLHL30Q0D2K2 578 aa20.58■□□□□ 0.89
USP48-204ENST00000400301 LMBR1Q8WVP7 490 aa20.58■□□□□ 0.89
USP48-204ENST00000400301 SALL1Q9NSC2 1324 aa20.58■□□□□ 0.89
USP48-204ENST00000400301 SERPINB2P05120 415 aa20.58■□□□□ 0.89
USP48-204ENST00000400301 ASIC2Q16515 512 aa20.58■□□□□ 0.89
USP48-204ENST00000400301 FAM26FQ5R3K3 315 aa20.58■□□□□ 0.89
USP48-204ENST00000400301 SFMBT2Q5VUG0 894 aa20.58■□□□□ 0.89
USP48-204ENST00000400301 IQCDQ96DY2 449 aa20.58■□□□□ 0.89
USP48-204ENST00000400301 PHF20Q9BVI0 1012 aa20.58■□□□□ 0.89
USP48-204ENST00000400301 TRIM49BA6NDI0 452 aa20.58■□□□□ 0.88
USP48-204ENST00000400301 MYL1P05976 194 aa20.58■□□□□ 0.88
USP48-204ENST00000400301 CCNE1P24864 410 aa20.58■□□□□ 0.88
USP48-204ENST00000400301 SF3B3Q15393 1217 aaKnown RBP20.58■□□□□ 0.88
USP48-204ENST00000400301 ANKRD13CQ8N6S4 541 aa20.58■□□□□ 0.88
USP48-204ENST00000400301 HDAC9Q9UKV0 1011 aa20.58■□□□□ 0.88
USP48-204ENST00000400301 FGFR2P21802 821 aa20.57■□□□□ 0.88
USP48-204ENST00000400301 SF3B2Q13435 895 aaKnown RBP20.57■□□□□ 0.88
USP48-204ENST00000400301 MARCH10Q8NA82 808 aaPredicted RBP20.57■□□□□ 0.88
USP48-204ENST00000400301 LONRF2Q1L5Z9 754 aa20.57■□□□□ 0.88
USP48-204ENST00000400301 VWA3BQ502W6 1294 aa20.57■□□□□ 0.88
USP48-204ENST00000400301 LRP10Q7Z4F1 713 aa20.57■□□□□ 0.88
USP48-204ENST00000400301 KIAA0825Q8IV33 1275 aa20.57■□□□□ 0.88
USP48-204ENST00000400301 TRIM58Q8NG06 486 aa20.57■□□□□ 0.88
USP48-204ENST00000400301 SH3GLB2Q9NR46 395 aa20.57■□□□□ 0.88
USP48-204ENST00000400301 PP2D1A8MPX8 630 aa20.57■□□□□ 0.88
USP48-204ENST00000400301 PRCPP42785 496 aa20.57■□□□□ 0.88
USP48-204ENST00000400301 NDUFA10O95299 355 aa20.57■□□□□ 0.88
USP48-204ENST00000400301 TNNC1P63316 161 aa20.57■□□□□ 0.88
USP48-204ENST00000400301 NTRK3Q16288 839 aa20.57■□□□□ 0.88
USP48-204ENST00000400301 ASPRV1Q53RT3 343 aa20.57■□□□□ 0.88
USP48-204ENST00000400301 RPGRIP1Q96KN7 1286 aa20.57■□□□□ 0.88
USP48-204ENST00000400301 PKD2L1Q9P0L9 805 aa20.57■□□□□ 0.88
USP48-204ENST00000400301 MYO1AQ9UBC5 1043 aa20.57■□□□□ 0.88
USP48-204ENST00000400301 DCCP43146 1447 aa20.56■□□□□ 0.88
USP48-204ENST00000400301 MTF1Q14872 753 aa20.56■□□□□ 0.88
USP48-204ENST00000400301 LRRC41Q15345 812 aa20.56■□□□□ 0.88
USP48-204ENST00000400301 STAG2Q8N3U4 1231 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms