RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 YWHAGP61981 247 aaKnown RBP eCLIP10.13□□□□□ -0.79
VPS13A-203ENST00000360280 FAM133BQ5BKY9 247 aaKnown RBP10.13□□□□□ -0.79
VPS13A-203ENST00000360280 MIGA1Q8NAN2 632 aa10.13□□□□□ -0.79
VPS13A-203ENST00000360280 EIF3BP55884 814 aaKnown RBP10.12□□□□□ -0.79
VPS13A-203ENST00000360280 PPP1R2P3Q6NXS1 205 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 KSR2Q6VAB6 950 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 PPP2R2CQ9Y2T4 447 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 SYCP2Q9BX26 1530 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 AOX1Q06278 1338 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 H0YCG3 227 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 SKOR1P84550 965 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 ARHGAP44Q17R89 818 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 SLC17A8Q8NDX2 589 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 CTNND1O60716 968 aaKnown RBP10.12□□□□□ -0.79
VPS13A-203ENST00000360280 LRRC8AQ8IWT6 810 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 RXRAP19793 462 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 CHMLP26374 656 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 LSM14BQ9BX40 385 aaKnown RBP10.12□□□□□ -0.79
VPS13A-203ENST00000360280 TAB2Q9NYJ8 693 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 DENND2AQ9ULE3 1009 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 JRKLQ9Y4A0 524 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 BFSP1Q12934 665 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 OLFM3Q96PB7 478 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 XPO4Q9C0E2 1151 aaKnown RBP10.12□□□□□ -0.79
VPS13A-203ENST00000360280 KCTD16Q68DU8 428 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 TTC19Q6DKK2 380 aaPredicted RBP10.12□□□□□ -0.79
VPS13A-203ENST00000360280 NBPF10Q6P3W6 841 aaKnown RBP10.12□□□□□ -0.79
VPS13A-203ENST00000360280 NOP53Q9NZM5 478 aaKnown RBP10.12□□□□□ -0.79
VPS13A-203ENST00000360280 PHLPP2Q6ZVD8 1323 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 SPDYE2BA6NHP3 402 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 SPDYE6P0CI01 402 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 DCLK2Q8N568 766 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 IGF1RP08069 1367 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 NR1I2O75469 434 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 ZC3H12CQ9C0D7 883 aaKnown RBP10.12□□□□□ -0.79
VPS13A-203ENST00000360280 ADKP55263 362 aaKnown RBP10.12□□□□□ -0.79
VPS13A-203ENST00000360280 HOOK2Q96ED9 719 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 SGK1O00141 431 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 ART3Q13508 389 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 TXKP42681 527 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 KLC3Q6P597 504 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 PTPN22Q9Y2R2 807 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 MAPK13O15264 365 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 KIAA2013Q8IYS2 634 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 JDP2Q8WYK2 163 aa10.12□□□□□ -0.79
VPS13A-203ENST00000360280 ATP5HO75947 161 aa10.11□□□□□ -0.79
VPS13A-203ENST00000360280 CHEK2O96017 543 aa10.11□□□□□ -0.79
VPS13A-203ENST00000360280 ARHGEF11O15085 1522 aa10.11□□□□□ -0.79
VPS13A-203ENST00000360280 GUCY2CP25092 1073 aa10.11□□□□□ -0.79
VPS13A-203ENST00000360280 PLXNC1O60486 1568 aa10.11□□□□□ -0.79
VPS13A-203ENST00000360280 WDR7Q9Y4E6 1490 aa10.11□□□□□ -0.79
VPS13A-203ENST00000360280 EYA3Q99504 573 aa10.11□□□□□ -0.79
VPS13A-203ENST00000360280 HEXIM1O94992 359 aaKnown RBP10.11□□□□□ -0.79
VPS13A-203ENST00000360280 MRPL40Q9NQ50 206 aaKnown RBP10.11□□□□□ -0.79
VPS13A-203ENST00000360280 MCTP2Q6DN12 878 aa10.11□□□□□ -0.79
VPS13A-203ENST00000360280 C17orf53Q8N3J3 647 aaPredicted RBP10.11□□□□□ -0.79
VPS13A-203ENST00000360280 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.11□□□□□ -0.792e-8■■■■■ 39.2
VPS13A-203ENST00000360280 F8W8V4 182 aa10.11□□□□□ -0.79
VPS13A-203ENST00000360280 IFNAR2P48551 515 aa10.11□□□□□ -0.79
VPS13A-203ENST00000360280 EXOC4Q96A65 974 aa10.11□□□□□ -0.79
VPS13A-203ENST00000360280 DBNLQ9UJU6 430 aaKnown RBP10.11□□□□□ -0.79
VPS13A-203ENST00000360280 PNMA2Q9UL42 364 aa10.11□□□□□ -0.79
VPS13A-203ENST00000360280 SPAG7O75391 227 aa10.11□□□□□ -0.79
VPS13A-203ENST00000360280 USP26Q9BXU7 913 aa10.11□□□□□ -0.79
VPS13A-203ENST00000360280 REXO1Q8N1G1 1221 aaKnown RBP10.11□□□□□ -0.79
VPS13A-203ENST00000360280 CPP00450 1065 aa10.11□□□□□ -0.79
VPS13A-203ENST00000360280 TNNC2P02585 160 aa10.11□□□□□ -0.79
VPS13A-203ENST00000360280 SH3GL3Q99963 347 aa10.11□□□□□ -0.79
VPS13A-203ENST00000360280 DCTPP1Q9H773 170 aa10.11□□□□□ -0.79
VPS13A-203ENST00000360280 MSH2P43246 934 aa10.1□□□□□ -0.79
VPS13A-203ENST00000360280 SPDYE1Q8NFV5 336 aaPredicted RBP10.1□□□□□ -0.79
VPS13A-203ENST00000360280 ENOX1Q8TC92 643 aaKnown RBP10.1□□□□□ -0.79
VPS13A-203ENST00000360280 PHKBQ93100 1093 aa10.1□□□□□ -0.79
VPS13A-203ENST00000360280 DPH5Q9H2P9 285 aa10.1□□□□□ -0.79
VPS13A-203ENST00000360280 SNX5Q9Y5X3 404 aa10.1□□□□□ -0.79
VPS13A-203ENST00000360280 ABCC1P33527 1531 aa10.1□□□□□ -0.79
VPS13A-203ENST00000360280 MRPL28Q13084 256 aaKnown RBP10.1□□□□□ -0.79
VPS13A-203ENST00000360280 E2F5Q15329 346 aa10.1□□□□□ -0.79
VPS13A-203ENST00000360280 MID2Q9UJV3 735 aa10.1□□□□□ -0.79
VPS13A-203ENST00000360280 HOXA7P31268 230 aaPredicted RBP10.1□□□□□ -0.79
VPS13A-203ENST00000360280 PNOCQ13519 176 aa10.1□□□□□ -0.79
VPS13A-203ENST00000360280 TEX11Q8IYF3 940 aa10.1□□□□□ -0.79
VPS13A-203ENST00000360280 ZNF215Q9UL58 517 aaPredicted RBP10.1□□□□□ -0.79
VPS13A-203ENST00000360280 IQSEC3Q9UPP2 1182 aaPredicted RBP10.1□□□□□ -0.79
VPS13A-203ENST00000360280 IVNS1ABPQ9Y6Y0 642 aa10.1□□□□□ -0.79
VPS13A-203ENST00000360280 KDM1AO60341 852 aa10.1□□□□□ -0.79
VPS13A-203ENST00000360280 ACTN1P12814 892 aa10.1□□□□□ -0.79
VPS13A-203ENST00000360280 HESX1Q9UBX0 185 aa10.1□□□□□ -0.79
VPS13A-203ENST00000360280 TRPC5Q9UL62 973 aaPredicted RBP10.1□□□□□ -0.79
VPS13A-203ENST00000360280 POC1B-GALNT4F8VUJ3 575 aa10.1□□□□□ -0.79
VPS13A-203ENST00000360280 MORC3Q14149 939 aa10.1□□□□□ -0.79
VPS13A-203ENST00000360280 ATP6V1E2Q96A05 226 aa10.1□□□□□ -0.79
VPS13A-203ENST00000360280 TBC1D7Q9P0N9 293 aa10.1□□□□□ -0.79
VPS13A-203ENST00000360280 MCF2LO15068 1137 aa10.1□□□□□ -0.79
VPS13A-203ENST00000360280 KIF17Q9P2E2 1029 aa10.1□□□□□ -0.79
VPS13A-203ENST00000360280 ZBTB12Q9Y330 459 aaPredicted RBP10.1□□□□□ -0.79
VPS13A-203ENST00000360280 LRRC8BQ6P9F7 803 aa10.1□□□□□ -0.79
VPS13A-203ENST00000360280 LMBR1LQ6UX01 489 aa10.1□□□□□ -0.79
VPS13A-203ENST00000360280 DNMBPQ6XZF7 1577 aa10.1□□□□□ -0.79
VPS13A-203ENST00000360280 BBS5Q8N3I7 341 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms