RNA–Protein interactions for RNA: ENST00000357475.8

SSBP3-202, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best) BASIC

Gene SSBP3, Length 1,533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-202ENST00000357475 HOXC10Q9NYD6 342 aa29.4■■■□□ 2.3
SSBP3-202ENST00000357475 ORC3Q9UBD5 711 aaPredicted RBP29.4■■■□□ 2.3
SSBP3-202ENST00000357475 MYPNQ86TC9 1320 aa29.4■■■□□ 2.3
SSBP3-202ENST00000357475 RRP36Q96EU6 259 aaKnown RBP29.4■■■□□ 2.3
SSBP3-202ENST00000357475 BTBD7Q9P203 1132 aa29.4■■■□□ 2.3
SSBP3-202ENST00000357475 STK36Q9NRP7 1315 aa29.39■■■□□ 2.3
SSBP3-202ENST00000357475 TMEM132BQ14DG7 1078 aa29.39■■■□□ 2.3
SSBP3-202ENST00000357475 GPKOWQ92917 476 aaPredicted RBP eCLIP29.39■■■□□ 2.31e-8■■□□□ 12.3
SSBP3-202ENST00000357475 SHISA4Q96DD7 197 aa29.39■■■□□ 2.3
SSBP3-202ENST00000357475 RAVER2Q9HCJ3 691 aaKnown RBP29.39■■■□□ 2.3
SSBP3-202ENST00000357475 TXNRD2Q9NNW7 524 aa29.39■■■□□ 2.3
SSBP3-202ENST00000357475 PNMA3Q9UL41 463 aa29.39■■■□□ 2.3
SSBP3-202ENST00000357475 ZBTB5O15062 677 aa29.38■■■□□ 2.29
SSBP3-202ENST00000357475 CNMDO75829 334 aa29.38■■■□□ 2.29
SSBP3-202ENST00000357475 GJB2P29033 226 aa29.38■■■□□ 2.29
SSBP3-202ENST00000357475 TRIM22Q8IYM9 498 aa29.38■■■□□ 2.29
SSBP3-202ENST00000357475 INTS4Q96HW7 963 aaKnown RBP29.38■■■□□ 2.29
SSBP3-202ENST00000357475 GJB4Q9NTQ9 266 aa29.38■■■□□ 2.29
SSBP3-202ENST00000357475 ZSCAN21Q9Y5A6 473 aaPredicted RBP29.38■■■□□ 2.29
SSBP3-202ENST00000357475 LBX2Q6XYB7 198 aa29.37■■■□□ 2.29
SSBP3-202ENST00000357475 CPXCR1Q8N123 301 aa29.37■■■□□ 2.29
SSBP3-202ENST00000357475 AGBL1Q96MI9 1066 aa29.37■■■□□ 2.29
SSBP3-202ENST00000357475 RBPJLQ9UBG7 517 aa29.37■■■□□ 2.29
SSBP3-202ENST00000357475 SMC3Q9UQE7 1217 aa29.37■■■□□ 2.29
SSBP3-202ENST00000357475 PNMA6FA0A0J9YX94 578 aa29.36■■■□□ 2.29
SSBP3-202ENST00000357475 MAP2K2P36507 400 aa29.36■■■□□ 2.29
SSBP3-202ENST00000357475 FOSBP53539 338 aa29.36■■■□□ 2.29
SSBP3-202ENST00000357475 TAF1CQ15572 869 aaPredicted RBP29.36■■■□□ 2.29
SSBP3-202ENST00000357475 PFKFB3Q16875 520 aaPredicted RBP29.36■■■□□ 2.29
SSBP3-202ENST00000357475 WWC2Q6AWC2 1192 aa29.36■■■□□ 2.29
SSBP3-202ENST00000357475 PARK7Q99497 189 aaKnown RBP29.36■■■□□ 2.29
SSBP3-202ENST00000357475 PAGR1Q9BTK6 254 aa29.36■■■□□ 2.29
SSBP3-202ENST00000357475 SEC63Q9UGP8 760 aaKnown RBP29.36■■■□□ 2.29
SSBP3-202ENST00000357475 ZNF214Q9UL59 606 aaPredicted RBP29.36■■■□□ 2.29
SSBP3-202ENST00000357475 ADGRA2Q96PE1 1338 aa29.36■■■□□ 2.29
SSBP3-202ENST00000357475 ZBED4O75132 1171 aa29.35■■■□□ 2.29
SSBP3-202ENST00000357475 HSP90AA1P07900 732 aaKnown RBP29.35■■■□□ 2.29
SSBP3-202ENST00000357475 AKAP17AQ02040 695 aaKnown RBP29.35■■■□□ 2.29
SSBP3-202ENST00000357475 USH1GQ495M9 461 aa29.35■■■□□ 2.29
SSBP3-202ENST00000357475 TYW1BQ6NUM6 668 aa29.35■■■□□ 2.29
SSBP3-202ENST00000357475 SMCR8Q8TEV9 937 aaPredicted RBP29.35■■■□□ 2.29
SSBP3-202ENST00000357475 COA7Q96BR5 231 aa29.35■■■□□ 2.29
SSBP3-202ENST00000357475 ZCCHC17Q9NP64 241 aaKnown RBP29.35■■■□□ 2.29
SSBP3-202ENST00000357475 DEXIO95424 95 aa29.35■■■□□ 2.29
SSBP3-202ENST00000357475 SCG2P13521 617 aa29.35■■■□□ 2.29
SSBP3-202ENST00000357475 HEATR3Q7Z4Q2 680 aa29.35■■■□□ 2.29
SSBP3-202ENST00000357475 CRHR2Q13324 411 aa29.34■■■□□ 2.29
SSBP3-202ENST00000357475 R3HDMLQ9H3Y0 253 aa29.34■■■□□ 2.29
SSBP3-202ENST00000357475 RIPK3Q9Y572 518 aa29.34■■■□□ 2.29
SSBP3-202ENST00000357475 HMGN5P82970 282 aaKnown RBP29.33■■■□□ 2.29
SSBP3-202ENST00000357475 Q3C1V9 767 aa29.33■■■□□ 2.29
SSBP3-202ENST00000357475 OTUD7BQ6GQQ9 843 aa29.33■■■□□ 2.29
SSBP3-202ENST00000357475 FBXO11Q86XK2 927 aa29.33■■■□□ 2.29
SSBP3-202ENST00000357475 ANKRD13CQ8N6S4 541 aa29.33■■■□□ 2.29
SSBP3-202ENST00000357475 STXBP3O00186 592 aa29.32■■■□□ 2.28
SSBP3-202ENST00000357475 ICAM1P05362 532 aa29.32■■■□□ 2.28
SSBP3-202ENST00000357475 PLS1Q14651 629 aa29.32■■■□□ 2.28
SSBP3-202ENST00000357475 ALG1Q9BT22 464 aa29.32■■■□□ 2.28
SSBP3-202ENST00000357475 VPS54Q9P1Q0 977 aa29.32■■■□□ 2.28
SSBP3-202ENST00000357475 CPA4Q9UI42 421 aa29.32■■■□□ 2.28
SSBP3-202ENST00000357475 CCPG1Q9ULG6 757 aa29.32■■■□□ 2.28
SSBP3-202ENST00000357475 CTDP1Q9Y5B0 961 aaPredicted RBP29.32■■■□□ 2.28
SSBP3-202ENST00000357475 DNAJC5GQ8N7S2 189 aa29.31■■■□□ 2.28
SSBP3-202ENST00000357475 FDX1P10109 184 aa29.3■■■□□ 2.28
SSBP3-202ENST00000357475 SNRNP48Q6IEG0 339 aaKnown RBP29.3■■■□□ 2.28
SSBP3-202ENST00000357475 REM2Q8IYK8 340 aaPredicted RBP29.3■■■□□ 2.28
SSBP3-202ENST00000357475 MB21D1Q8N884 522 aa29.3■■■□□ 2.28
SSBP3-202ENST00000357475 FAM184AQ8NB25 1140 aa29.3■■■□□ 2.28
SSBP3-202ENST00000357475 AMNQ9BXJ7 453 aa29.3■■■□□ 2.28
SSBP3-202ENST00000357475 RBM27Q9P2N5 1060 aaKnown RBP29.3■■■□□ 2.28
SSBP3-202ENST00000357475 RABGAP1Q9Y3P9 1069 aa29.3■■■□□ 2.28
SSBP3-202ENST00000357475 PCDHA1Q9Y5I3 950 aa29.3■■■□□ 2.28
SSBP3-202ENST00000357475 ADAMTS3O15072 1205 aa29.3■■■□□ 2.28
SSBP3-202ENST00000357475 IPO9Q96P70 1041 aaKnown RBP29.3■■■□□ 2.28
SSBP3-202ENST00000357475 SPATC1LQ9H0A9 340 aa29.3■■■□□ 2.28
SSBP3-202ENST00000357475 HOMER2Q9NSB8 354 aa29.3■■■□□ 2.28
SSBP3-202ENST00000357475 BARHL2Q9NY43 387 aa29.3■■■□□ 2.28
SSBP3-202ENST00000357475 ATP2A1O14983 1001 aa29.29■■■□□ 2.28
SSBP3-202ENST00000357475 CA12O43570 354 aa29.29■■■□□ 2.28
SSBP3-202ENST00000357475 GUCY1B3Q02153 619 aa29.29■■■□□ 2.28
SSBP3-202ENST00000357475 ALAS1P13196 640 aa29.28■■■□□ 2.28
SSBP3-202ENST00000357475 STAT3P40763 770 aa29.28■■■□□ 2.28
SSBP3-202ENST00000357475 GCLCP48506 637 aaPredicted RBP29.28■■■□□ 2.28
SSBP3-202ENST00000357475 OAZ1P54368 228 aa29.28■■■□□ 2.28
SSBP3-202ENST00000357475 ERVK-9P63128 1117 aa29.28■■■□□ 2.28
SSBP3-202ENST00000357475 ERVK-24P63145 666 aa29.28■■■□□ 2.28
SSBP3-202ENST00000357475 MOV10L1Q9BXT6 1211 aaKnown RBP29.28■■■□□ 2.28
SSBP3-202ENST00000357475 TEX13BQ9BXU2 312 aa29.28■■■□□ 2.28
SSBP3-202ENST00000357475 ZFYVE28Q9HCC9 887 aa29.28■■■□□ 2.28
SSBP3-202ENST00000357475 RNF186Q9NXI6 227 aa29.28■■■□□ 2.28
SSBP3-202ENST00000357475 KCNJ14Q9UNX9 436 aa29.28■■■□□ 2.28
SSBP3-202ENST00000357475 OPLAHO14841 1288 aa29.27■■■□□ 2.28
SSBP3-202ENST00000357475 TLR2O60603 784 aa29.27■■■□□ 2.28
SSBP3-202ENST00000357475 TBC1D8O95759 1140 aa29.27■■■□□ 2.28
SSBP3-202ENST00000357475 MUM1L1Q5H9M0 696 aa29.27■■■□□ 2.28
SSBP3-202ENST00000357475 MORF4L1Q9UBU8 362 aa29.27■■■□□ 2.28
SSBP3-202ENST00000357475 RBBP6Q7Z6E9 1792 aaKnown RBP29.27■■■□□ 2.28
SSBP3-202ENST00000357475 TRPA1O75762 1119 aa29.26■■■□□ 2.27
SSBP3-202ENST00000357475 BCRP11274 1271 aa29.26■■■□□ 2.27
SSBP3-202ENST00000357475 NAPAP54920 295 aa29.26■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms