RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 CPNE3O75131 537 aaKnown RBP2.84□□□□□ -1.95
VPS54-202ENST00000354504 CTDNEP1O95476 244 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 H2AFB1P0C5Y9 115 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 H2AFB2P0C5Z0 115 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 MX1P20591 662 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 CTBSQ01459 385 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 ANKRD45Q5TZF3 282 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 MCF2L2Q86YR7 1114 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 FAM177A1Q8N128 213 aaPredicted RBP2.84□□□□□ -1.95
VPS54-202ENST00000354504 PLBD2Q8NHP8 589 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 FBXO27Q8NI29 283 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 XAGE3Q8WTP9 111 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 ZNF512BQ96KM6 892 aaPredicted RBP2.84□□□□□ -1.95
VPS54-202ENST00000354504 KRTAP4-8Q9BYQ9 185 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 LMBRD1Q9NUN5 540 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 HYPKQ9NX55 129 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 C10orf71Q711Q0 1435 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 NTSR2O95665 410 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 A1BGP04217 495 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 NFKB1P19838 968 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 FAM160A1Q05DH4 1040 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 PTPN11Q06124 597 aaPredicted RBP2.84□□□□□ -1.95
VPS54-202ENST00000354504 RIPOR1Q6ZS17 1223 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 C1orf229Q6ZS94 237 aaPredicted RBP2.84□□□□□ -1.95
VPS54-202ENST00000354504 COPS6Q7L5N1 327 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 DTWD1Q8N5C7 304 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 PPIL4Q8WUA2 492 aaKnown RBP eCLIP2.84□□□□□ -1.95
VPS54-202ENST00000354504 LTV1Q96GA3 475 aaPredicted RBP2.84□□□□□ -1.95
VPS54-202ENST00000354504 CRELD1Q96HD1 420 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 C12orf49Q9H741 205 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 CAPN10Q9HC96 672 aa2.84□□□□□ -1.95
VPS54-202ENST00000354504 METTL5Q9NRN9 209 aaKnown RBP2.84□□□□□ -1.95
VPS54-202ENST00000354504 ABI2Q9NYB9 513 aaPredicted RBP2.84□□□□□ -1.95
VPS54-202ENST00000354504 ZNF804BA4D1E1 1349 aa2.84□□□□□ -1.96
VPS54-202ENST00000354504 A0A1W2PP55 124 aa2.84□□□□□ -1.96
VPS54-202ENST00000354504 ENC1O14682 589 aa2.84□□□□□ -1.96
VPS54-202ENST00000354504 ITGB2P05107 769 aa2.84□□□□□ -1.96
VPS54-202ENST00000354504 IL2RBP14784 551 aa2.84□□□□□ -1.96
VPS54-202ENST00000354504 ZNF76P36508 570 aa2.84□□□□□ -1.96
VPS54-202ENST00000354504 ARSDP51689 593 aa2.84□□□□□ -1.96
VPS54-202ENST00000354504 EXOSC10Q01780 885 aaKnown RBP2.84□□□□□ -1.96
VPS54-202ENST00000354504 GNASQ5JWF2 1037 aa2.84□□□□□ -1.96
VPS54-202ENST00000354504 FBXL19Q6PCT2 694 aa2.84□□□□□ -1.96
VPS54-202ENST00000354504 FTSJ3Q8IY81 847 aaKnown RBP2.84□□□□□ -1.96
VPS54-202ENST00000354504 LINC00116Q8NCU8 138 aa2.84□□□□□ -1.96
VPS54-202ENST00000354504 ZCRB1Q8TBF4 217 aaKnown RBP2.84□□□□□ -1.96
VPS54-202ENST00000354504 TNPO1Q92973 898 aaKnown RBP2.84□□□□□ -1.96
VPS54-202ENST00000354504 TNFRSF25Q93038 417 aa2.84□□□□□ -1.96
VPS54-202ENST00000354504 PUS3Q9BZE2 481 aaKnown RBP2.84□□□□□ -1.96
VPS54-202ENST00000354504 NUCKS1Q9H1E3 243 aaKnown RBP2.84□□□□□ -1.96
VPS54-202ENST00000354504 GPR108Q9NPR9 543 aa2.84□□□□□ -1.96
VPS54-202ENST00000354504 THRAP3Q9Y2W1 955 aaKnown RBP2.84□□□□□ -1.96
VPS54-202ENST00000354504 LOXHD1Q8IVV2 1947 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 RAB11FIP3O75154 756 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 SIN3BO75182 1162 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 CDC45O75419 566 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 CIAO1O76071 339 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 SNRPA1P09661 255 aaKnown RBP2.83□□□□□ -1.96
VPS54-202ENST00000354504 TNP2Q05952 138 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 LRRC24Q50LG9 513 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 RNFT1Q5M7Z0 435 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 PDZRN4Q6ZMN7 1036 aaPredicted RBP2.83□□□□□ -1.96
VPS54-202ENST00000354504 NLGN1Q8N2Q7 840 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 GTPBP3Q969Y2 492 aaKnown RBP2.83□□□□□ -1.96
VPS54-202ENST00000354504 EDC3Q96F86 508 aaKnown RBP2.83□□□□□ -1.96
VPS54-202ENST00000354504 FAM227BQ96M60 508 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 NACC1Q96RE7 527 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 HAUS7Q99871 368 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 UBP1Q9NZI7 540 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 DENND2AQ9ULE3 1009 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 PCDHGC4Q9Y5F7 938 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 MRVI1Q9Y6F6 885 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 MINDY4BA8MYZ0 360 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 KHNYNO15037 678 aaKnown RBP2.83□□□□□ -1.96
VPS54-202ENST00000354504 AP5Z1O43299 807 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 TAF5LO75529 589 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 ATP5JP18859 108 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 TPTE2Q6XPS3 522 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 ERMP1Q7Z2K6 904 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 NLRP10Q86W26 655 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 FAM169BQ8N8A8 192 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 SLC43A3Q8NBI5 491 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 PMEPA1Q969W9 287 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 LRRCC1Q9C099 1032 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 SRCIN1Q9C0H9 1055 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 MAP3K15Q6ZN16 1313 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 ANK1P16157 1881 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 DOCK1Q14185 1865 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 KIAA1217Q5T5P2 1943 aa2.83□□□□□ -1.96
VPS54-202ENST00000354504 KLRG2A4D1S0 409 aaPredicted RBP2.82□□□□□ -1.96
VPS54-202ENST00000354504 SMIM22K7EJ46 135 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 PHACTR2O75167 634 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 GTF2E1P29083 439 aaPredicted RBP2.82□□□□□ -1.96
VPS54-202ENST00000354504 FCGRTP55899 365 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 PCBP4P57723 403 aaKnown RBP2.82□□□□□ -1.96
VPS54-202ENST00000354504 ANTXR2P58335 489 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 ANAPC15P60006 121 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 TNNI3KQ59H18 835 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 CCDC81Q6ZN84 652 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 C8orf86Q6ZUL3 223 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms