RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 MAP4K1Q92918 833 aa13.27□□□□□ -0.29
LINC00538-201ENST00000626109 TDRD3Q9H7E2 651 aaKnown RBP13.27□□□□□ -0.29
LINC00538-201ENST00000626109 SLC4A4Q9Y6R1 1079 aa13.27□□□□□ -0.29
LINC00538-201ENST00000626109 SCN4AP35499 1836 aa13.27□□□□□ -0.29
LINC00538-201ENST00000626109 GADD45BO75293 160 aaPredicted RBP13.26□□□□□ -0.29
LINC00538-201ENST00000626109 GJB2P29033 226 aa13.26□□□□□ -0.29
LINC00538-201ENST00000626109 MFSD10Q14728 455 aa13.26□□□□□ -0.29
LINC00538-201ENST00000626109 BRD3Q15059 726 aa13.26□□□□□ -0.29
LINC00538-201ENST00000626109 MYSM1Q5VVJ2 828 aa13.26□□□□□ -0.29
LINC00538-201ENST00000626109 CREB3L3Q68CJ9 461 aa13.26□□□□□ -0.29
LINC00538-201ENST00000626109 USP50Q70EL3 339 aaPredicted RBP13.26□□□□□ -0.29
LINC00538-201ENST00000626109 FERMT3Q86UX7 667 aa13.26□□□□□ -0.29
LINC00538-201ENST00000626109 RETREG1Q9H6L5 497 aa13.26□□□□□ -0.29
LINC00538-201ENST00000626109 PPCSQ9HAB8 311 aa13.26□□□□□ -0.29
LINC00538-201ENST00000626109 ZNF70Q9UC06 446 aaPredicted RBP13.26□□□□□ -0.29
LINC00538-201ENST00000626109 RBM8AQ9Y5S9 174 aaKnown RBP13.26□□□□□ -0.29
LINC00538-201ENST00000626109 MRVI1Q9Y6F6 885 aa13.26□□□□□ -0.29
LINC00538-201ENST00000626109 CLRN2A0PK11 232 aa13.25□□□□□ -0.29
LINC00538-201ENST00000626109 COL6A1P12109 1028 aa13.25□□□□□ -0.29
LINC00538-201ENST00000626109 CCDC83Q8IWF9 413 aa13.25□□□□□ -0.29
LINC00538-201ENST00000626109 SUGP1Q8IWZ8 645 aaKnown RBP13.25□□□□□ -0.29
LINC00538-201ENST00000626109 CHPFQ8IZ52 775 aa13.25□□□□□ -0.29
LINC00538-201ENST00000626109 RNF214Q8ND24 703 aa13.25□□□□□ -0.29
LINC00538-201ENST00000626109 CEP89Q96ST8 783 aa13.25□□□□□ -0.29
LINC00538-201ENST00000626109 APBA2Q99767 749 aa13.25□□□□□ -0.29
LINC00538-201ENST00000626109 NACAP1Q9BZK3 213 aa13.25□□□□□ -0.29
LINC00538-201ENST00000626109 TAF1DQ9H5J8 278 aaPredicted RBP13.25□□□□□ -0.29
LINC00538-201ENST00000626109 VEZTQ9HBM0 779 aa13.25□□□□□ -0.29
LINC00538-201ENST00000626109 ANAPC4Q9UJX5 808 aa13.25□□□□□ -0.29
LINC00538-201ENST00000626109 CNPY2Q9Y2B0 182 aa13.25□□□□□ -0.29
LINC00538-201ENST00000626109 SLC45A1Q9Y2W3 748 aa13.25□□□□□ -0.29
LINC00538-201ENST00000626109 PRKAB2O43741 272 aa13.25□□□□□ -0.29
LINC00538-201ENST00000626109 VEGFAP15692 232 aaPredicted RBP13.25□□□□□ -0.29
LINC00538-201ENST00000626109 KRT32Q14532 448 aa13.25□□□□□ -0.29
LINC00538-201ENST00000626109 LARP1BQ659C4 914 aaKnown RBP13.25□□□□□ -0.29
LINC00538-201ENST00000626109 PNMA8AQ86V59 439 aaPredicted RBP13.25□□□□□ -0.29
LINC00538-201ENST00000626109 TGFBRAP1Q8WUH2 860 aa13.25□□□□□ -0.29
LINC00538-201ENST00000626109 SDR42E1Q8WUS8 393 aa13.25□□□□□ -0.29
LINC00538-201ENST00000626109 RRAGCQ9HB90 399 aa13.25□□□□□ -0.29
LINC00538-201ENST00000626109 SYNRGQ9UMZ2 1314 aa13.24□□□□□ -0.29
LINC00538-201ENST00000626109 POTECB2RU33 542 aa13.24□□□□□ -0.29
LINC00538-201ENST00000626109 RNASEH2AO75792 299 aaKnown RBP13.24□□□□□ -0.29
LINC00538-201ENST00000626109 HSPD1P10809 573 aaKnown RBP13.24□□□□□ -0.29
LINC00538-201ENST00000626109 PICALMQ13492 652 aa13.24□□□□□ -0.29
LINC00538-201ENST00000626109 ZKSCAN8Q15776 578 aaPredicted RBP13.24□□□□□ -0.29
LINC00538-201ENST00000626109 PPP4R4Q6NUP7 873 aa13.24□□□□□ -0.29
LINC00538-201ENST00000626109 BLOC1S2Q6QNY1 142 aa13.24□□□□□ -0.29
LINC00538-201ENST00000626109 VPS37AQ8NEZ2 397 aa13.24□□□□□ -0.29
LINC00538-201ENST00000626109 DSCC1Q9BVC3 393 aa13.24□□□□□ -0.29
LINC00538-201ENST00000626109 ATP8A2Q9NTI2 1148 aa13.24□□□□□ -0.29
LINC00538-201ENST00000626109 HIRAP54198 1017 aaPredicted RBP13.23□□□□□ -0.29
LINC00538-201ENST00000626109 CACNB3P54284 484 aa13.23□□□□□ -0.29
LINC00538-201ENST00000626109 TNFAIP1Q13829 316 aa13.23□□□□□ -0.29
LINC00538-201ENST00000626109 ADCK5Q3MIX3 580 aa13.23□□□□□ -0.29
LINC00538-201ENST00000626109 TSGA10IPQ3SY00 556 aa13.23□□□□□ -0.29
LINC00538-201ENST00000626109 EAPPQ56P03 285 aaPredicted RBP13.23□□□□□ -0.29
LINC00538-201ENST00000626109 FKBP1CQ5VVH2 108 aa13.23□□□□□ -0.29
LINC00538-201ENST00000626109 MAPKAPK5Q8IW41 473 aa13.23□□□□□ -0.29
LINC00538-201ENST00000626109 CCDC89Q8N998 374 aa13.23□□□□□ -0.29
LINC00538-201ENST00000626109 IDI2Q9BXS1 227 aa13.23□□□□□ -0.29
LINC00538-201ENST00000626109 GGA3Q9NZ52 723 aa13.23□□□□□ -0.29
LINC00538-201ENST00000626109 FLT1P17948 1338 aa13.23□□□□□ -0.29
LINC00538-201ENST00000626109 ECM29Q5VYK3 1845 aa13.23□□□□□ -0.29
LINC00538-201ENST00000626109 GSG1L2A8MUP6 293 aa13.23□□□□□ -0.29
LINC00538-201ENST00000626109 TCP10L2B9ZVM9 353 aa13.23□□□□□ -0.29
LINC00538-201ENST00000626109 SLC27A2O14975 620 aa13.23□□□□□ -0.29
LINC00538-201ENST00000626109 PYGBP11216 843 aa13.23□□□□□ -0.29
LINC00538-201ENST00000626109 NFIAQ12857 509 aa13.23□□□□□ -0.29
LINC00538-201ENST00000626109 ANGEL2Q5VTE6 544 aaKnown RBP13.23□□□□□ -0.29
LINC00538-201ENST00000626109 APOBEC3FQ8IUX4 373 aaKnown RBP13.23□□□□□ -0.29
LINC00538-201ENST00000626109 CCDC47Q96A33 483 aaKnown RBP13.23□□□□□ -0.29
LINC00538-201ENST00000626109 NAPBQ9H115 298 aa13.23□□□□□ -0.29
LINC00538-201ENST00000626109 NMRK2Q9NPI5 230 aa13.23□□□□□ -0.29
LINC00538-201ENST00000626109 DCP1AQ9NPI6 582 aaPredicted RBP13.23□□□□□ -0.29
LINC00538-201ENST00000626109 MTMR6Q9Y217 621 aa13.23□□□□□ -0.29
LINC00538-201ENST00000626109 MAFBQ9Y5Q3 323 aaPredicted RBP13.23□□□□□ -0.29
LINC00538-201ENST00000626109 TBX3O15119 743 aa13.22□□□□□ -0.29
LINC00538-201ENST00000626109 FIBPO43427 364 aa13.22□□□□□ -0.29
LINC00538-201ENST00000626109 ENTPD3O75355 529 aa13.22□□□□□ -0.29
LINC00538-201ENST00000626109 BPNT1O95861 308 aa13.22□□□□□ -0.29
LINC00538-201ENST00000626109 ATICP31939 592 aa13.22□□□□□ -0.29
LINC00538-201ENST00000626109 KRT85P78386 507 aa13.22□□□□□ -0.29
LINC00538-201ENST00000626109 RAPGEF1Q13905 1077 aa13.22□□□□□ -0.29
LINC00538-201ENST00000626109 TOMM20Q15388 145 aa13.22□□□□□ -0.29
LINC00538-201ENST00000626109 ARMC3Q5W041 872 aa13.22□□□□□ -0.29
LINC00538-201ENST00000626109 TTC30AQ86WT1 665 aa13.22□□□□□ -0.29
LINC00538-201ENST00000626109 IFNL3Q8IZI9 196 aa13.22□□□□□ -0.29
LINC00538-201ENST00000626109 FAM161BQ96MY7 647 aa13.22□□□□□ -0.29
LINC00538-201ENST00000626109 EPB41L4AQ9HCS5 686 aaPredicted RBP13.22□□□□□ -0.29
LINC00538-201ENST00000626109 ASTN2O75129 1339 aaPredicted RBP13.22□□□□□ -0.29
LINC00538-201ENST00000626109 PITPNM2Q9BZ72 1349 aa13.22□□□□□ -0.29
LINC00538-201ENST00000626109 UTRNP46939 3433 aa13.22□□□□□ -0.29
LINC00538-201ENST00000626109 PPP1R12AO14974 1030 aaPredicted RBP13.21□□□□□ -0.29
LINC00538-201ENST00000626109 RGS20O76081 388 aa13.21□□□□□ -0.29
LINC00538-201ENST00000626109 CPA1P15085 419 aa13.21□□□□□ -0.29
LINC00538-201ENST00000626109 CLK2P49760 499 aaKnown RBP13.21□□□□□ -0.29
LINC00538-201ENST00000626109 TCP10Q12799 353 aa13.21□□□□□ -0.29
LINC00538-201ENST00000626109 ALX1Q15699 326 aa13.21□□□□□ -0.29
LINC00538-201ENST00000626109 ME3Q16798 604 aa13.21□□□□□ -0.29
LINC00538-201ENST00000626109 TMEM259Q4ZIN3 620 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms