RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 PDGFDQ9GZP0 370 aaPredicted RBP24.23■■□□□ 1.47
LIME1-210ENST00000621325 IGKV6D-41A0A0C4DH26 115 aa24.22■■□□□ 1.47
LIME1-210ENST00000621325 CCDC194A0A1B0GVG4 234 aa24.22■■□□□ 1.47
LIME1-210ENST00000621325 INF2Q27J81 1249 aa24.22■■□□□ 1.47
LIME1-210ENST00000621325 PPP4R3BQ5MIZ7 849 aa24.22■■□□□ 1.47
LIME1-210ENST00000621325 DACT2Q5SW24 774 aa24.22■■□□□ 1.47
LIME1-210ENST00000621325 TMEM51Q9NW97 253 aa24.22■■□□□ 1.47
LIME1-210ENST00000621325 SLFN14P0C7P3 912 aa24.22■■□□□ 1.47
LIME1-210ENST00000621325 ZSCAN20P17040 1043 aaPredicted RBP24.22■■□□□ 1.47
LIME1-210ENST00000621325 DAGLBQ8NCG7 672 aa24.22■■□□□ 1.47
LIME1-210ENST00000621325 CAMKK2Q96RR4 588 aa24.22■■□□□ 1.47
LIME1-210ENST00000621325 NAPAP54920 295 aa24.21■■□□□ 1.47
LIME1-210ENST00000621325 MORC3Q14149 939 aa24.21■■□□□ 1.47
LIME1-210ENST00000621325 AOC3Q16853 763 aa24.21■■□□□ 1.47
LIME1-210ENST00000621325 KANK3Q6NY19 840 aa24.21■■□□□ 1.47
LIME1-210ENST00000621325 PAGE5Q96GU1 130 aa24.21■■□□□ 1.47
LIME1-210ENST00000621325 TPM4P67936 248 aa24.21■■□□□ 1.47
LIME1-210ENST00000621325 TCP10Q12799 353 aa24.21■■□□□ 1.47
LIME1-210ENST00000621325 STRIP1Q5VSL9 837 aa24.21■■□□□ 1.47
LIME1-210ENST00000621325 SPATA20Q8TB22 786 aa24.21■■□□□ 1.47
LIME1-210ENST00000621325 C7orf43Q8WVR3 580 aa24.21■■□□□ 1.47
LIME1-210ENST00000621325 RRP36Q96EU6 259 aaKnown RBP24.21■■□□□ 1.47
LIME1-210ENST00000621325 ZDHHC15Q96MV8 337 aa24.21■■□□□ 1.47
LIME1-210ENST00000621325 CDC25AP30304 524 aa24.2■■□□□ 1.46
LIME1-210ENST00000621325 TERF1P54274 439 aa24.2■■□□□ 1.46
LIME1-210ENST00000621325 FANCCQ00597 558 aa24.2■■□□□ 1.46
LIME1-210ENST00000621325 SH3RF1Q7Z6J0 888 aa24.2■■□□□ 1.46
LIME1-210ENST00000621325 LRRC8AQ8IWT6 810 aa24.2■■□□□ 1.46
LIME1-210ENST00000621325 STAMQ92783 540 aa24.2■■□□□ 1.46
LIME1-210ENST00000621325 FANCLQ9NW38 375 aa24.2■■□□□ 1.46
LIME1-210ENST00000621325 RBM5P52756 815 aaKnown RBP eCLIP24.2■■□□□ 1.46
LIME1-210ENST00000621325 FMR1Q06787 632 aaKnown RBP eCLIP24.2■■□□□ 1.46
LIME1-210ENST00000621325 DNTTIP2Q5QJE6 756 aaKnown RBP24.2■■□□□ 1.46
LIME1-210ENST00000621325 ZMYND12Q9H0C1 365 aa24.2■■□□□ 1.46
LIME1-210ENST00000621325 FAM196BA6NMK8 535 aa24.19■■□□□ 1.46
LIME1-210ENST00000621325 GALNT17Q6IS24 598 aa24.19■■□□□ 1.46
LIME1-210ENST00000621325 TMEM60Q9H2L4 133 aa24.19■■□□□ 1.46
LIME1-210ENST00000621325 SWAP70Q9UH65 585 aa24.19■■□□□ 1.46
LIME1-210ENST00000621325 VGLL3A8MV65 326 aa24.19■■□□□ 1.46
LIME1-210ENST00000621325 DPF2Q92785 391 aa24.19■■□□□ 1.46
LIME1-210ENST00000621325 CNKSR1Q969H4 720 aa24.19■■□□□ 1.46
LIME1-210ENST00000621325 DNAJC18Q9H819 358 aa24.19■■□□□ 1.46
LIME1-210ENST00000621325 STK32BQ9NY57 414 aa24.19■■□□□ 1.46
LIME1-210ENST00000621325 SMCO2A6NFE2 343 aa24.18■■□□□ 1.46
LIME1-210ENST00000621325 HSP90AA4PQ58FG1 418 aa24.18■■□□□ 1.46
LIME1-210ENST00000621325 GPCPD1Q9NPB8 672 aa24.18■■□□□ 1.46
LIME1-210ENST00000621325 SEC63Q9UGP8 760 aaKnown RBP24.18■■□□□ 1.46
LIME1-210ENST00000621325 MPHOSPH10O00566 681 aaKnown RBP24.18■■□□□ 1.46
LIME1-210ENST00000621325 E2F4Q16254 413 aa24.18■■□□□ 1.46
LIME1-210ENST00000621325 SHROOM1Q2M3G4 852 aaPredicted RBP24.18■■□□□ 1.46
LIME1-210ENST00000621325 TRMT44Q8IYL2 757 aaKnown RBP24.18■■□□□ 1.46
LIME1-210ENST00000621325 MED15Q96RN5 788 aa24.18■■□□□ 1.46
LIME1-210ENST00000621325 RIOX1Q9H6W3 641 aa24.18■■□□□ 1.46
LIME1-210ENST00000621325 TTLL1O95922 423 aa24.17■■□□□ 1.46
LIME1-210ENST00000621325 HLA-DOAP06340 250 aa24.17■■□□□ 1.46
LIME1-210ENST00000621325 MYH8P13535 1937 aa24.17■■□□□ 1.46
LIME1-210ENST00000621325 UQCRHLA0A096LP55 91 aa24.16■■□□□ 1.46
LIME1-210ENST00000621325 DDTLA6NHG4 134 aaPredicted RBP24.16■■□□□ 1.46
LIME1-210ENST00000621325 UQCRHP07919 91 aa24.16■■□□□ 1.46
LIME1-210ENST00000621325 SMARCA1P28370 1054 aa24.16■■□□□ 1.46
LIME1-210ENST00000621325 ARL6IP4Q66PJ3 421 aaKnown RBP24.16■■□□□ 1.46
LIME1-210ENST00000621325 MLKLQ8NB16 471 aa24.16■■□□□ 1.46
LIME1-210ENST00000621325 FAM198AQ9UFP1 575 aa24.16■■□□□ 1.46
LIME1-210ENST00000621325 SNHG28P0DPA3 235 aa24.16■■□□□ 1.46
LIME1-210ENST00000621325 ATP2B2Q01814 1243 aa24.16■■□□□ 1.46
LIME1-210ENST00000621325 DPYDQ12882 1025 aa24.16■■□□□ 1.46
LIME1-210ENST00000621325 TMC6Q7Z403 805 aa24.16■■□□□ 1.46
LIME1-210ENST00000621325 RGPD3A6NKT7 1758 aaPredicted RBP24.16■■□□□ 1.46
LIME1-210ENST00000621325 RGPD4Q7Z3J3 1758 aa24.16■■□□□ 1.46
LIME1-210ENST00000621325 PLCD3Q8N3E9 789 aa24.15■■□□□ 1.46
LIME1-210ENST00000621325 TRIML1Q8N9V2 468 aa24.15■■□□□ 1.46
LIME1-210ENST00000621325 MTRQ99707 1265 aa24.15■■□□□ 1.46
LIME1-210ENST00000621325 PDXDC2PQ6P474 469 aa24.15■■□□□ 1.46
LIME1-210ENST00000621325 SH3BP5LQ7L8J4 393 aa24.15■■□□□ 1.46
LIME1-210ENST00000621325 PP2D1A8MPX8 630 aa24.14■■□□□ 1.46
LIME1-210ENST00000621325 C21orf2O43822 256 aa24.14■■□□□ 1.46
LIME1-210ENST00000621325 PTPN21Q16825 1174 aa24.14■■□□□ 1.46
LIME1-210ENST00000621325 ASPRV1Q53RT3 343 aa24.14■■□□□ 1.46
LIME1-210ENST00000621325 TTBK2Q6IQ55 1244 aa24.14■■□□□ 1.46
LIME1-210ENST00000621325 CCDC12Q8WUD4 166 aaPredicted RBP24.14■■□□□ 1.46
LIME1-210ENST00000621325 COA7Q96BR5 231 aa24.14■■□□□ 1.46
LIME1-210ENST00000621325 BLZF1Q9H2G9 400 aa24.14■■□□□ 1.46
LIME1-210ENST00000621325 C6orf50Q9HD87 102 aa24.14■■□□□ 1.46
LIME1-210ENST00000621325 LONP1P36776 959 aaKnown RBP24.14■■□□□ 1.45
LIME1-210ENST00000621325 FKBP1AP62942 108 aaKnown RBP24.14■■□□□ 1.45
LIME1-210ENST00000621325 IQUBQ8NA54 791 aa24.14■■□□□ 1.45
LIME1-210ENST00000621325 MRIQ9BWK5 157 aa24.14■■□□□ 1.45
LIME1-210ENST00000621325 MYO3BQ8WXR4 1341 aa24.14■■□□□ 1.45
LIME1-210ENST00000621325 SERPINC1P01008 464 aa24.13■■□□□ 1.45
LIME1-210ENST00000621325 UBASH3AP57075 661 aa24.13■■□□□ 1.45
LIME1-210ENST00000621325 SMYD4Q8IYR2 804 aaPredicted RBP24.13■■□□□ 1.45
LIME1-210ENST00000621325 EHD4Q9H223 541 aa24.13■■□□□ 1.45
LIME1-210ENST00000621325 TMEM260Q9NX78 707 aa24.13■■□□□ 1.45
LIME1-210ENST00000621325 BIN2Q9UBW5 565 aaPredicted RBP24.13■■□□□ 1.45
LIME1-210ENST00000621325 NFE2L3Q9Y4A8 694 aa24.13■■□□□ 1.45
LIME1-210ENST00000621325 ZNF646O15015 1829 aaPredicted RBP24.13■■□□□ 1.45
LIME1-210ENST00000621325 YDJCA8MPS7 323 aa24.13■■□□□ 1.45
LIME1-210ENST00000621325 CD44P16070 742 aaKnown RBP24.13■■□□□ 1.45
LIME1-210ENST00000621325 CCZ1BP86790 482 aa24.13■■□□□ 1.45
LIME1-210ENST00000621325 CCZ1P86791 482 aaPredicted RBP24.13■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms