RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 EEF2P13639 858 aaKnown RBP9.4□□□□□ -0.9
CLK1-215ENST00000621181 TAL1P17542 331 aaPredicted RBP9.4□□□□□ -0.9
CLK1-215ENST00000621181 COPB2P35606 906 aa9.4□□□□□ -0.9
CLK1-215ENST00000621181 CDK8P49336 464 aa9.4□□□□□ -0.9
CLK1-215ENST00000621181 EPHB4P54760 987 aa9.4□□□□□ -0.9
CLK1-215ENST00000621181 KIF1BPQ96EK5 621 aa9.4□□□□□ -0.9
CLK1-215ENST00000621181 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.4□□□□□ -0.93e-11■□□□□ 10.1
CLK1-215ENST00000621181 PRDM6Q9NQX0 595 aa9.4□□□□□ -0.9
CLK1-215ENST00000621181 STARD7Q9NQZ5 370 aa9.4□□□□□ -0.9
CLK1-215ENST00000621181 PLXNA1Q9UIW2 1896 aa9.4□□□□□ -0.9
CLK1-215ENST00000621181 ROBO3Q96MS0 1386 aa9.4□□□□□ -0.9
CLK1-215ENST00000621181 CYP2D7A0A087X1C5 515 aa9.4□□□□□ -0.91
CLK1-215ENST00000621181 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.4□□□□□ -0.91
CLK1-215ENST00000621181 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.4□□□□□ -0.91
CLK1-215ENST00000621181 USP17L12C9JPN9 530 aa9.4□□□□□ -0.91
CLK1-215ENST00000621181 USP17L21D6R901 530 aa9.4□□□□□ -0.91
CLK1-215ENST00000621181 RRP1P56182 461 aaKnown RBP9.4□□□□□ -0.91
CLK1-215ENST00000621181 ZNF792Q3KQV3 632 aa9.4□□□□□ -0.91
CLK1-215ENST00000621181 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.4□□□□□ -0.91
CLK1-215ENST00000621181 TOX2Q96NM4 488 aa9.4□□□□□ -0.91
CLK1-215ENST00000621181 ZNF214Q9UL59 606 aaPredicted RBP9.4□□□□□ -0.91
CLK1-215ENST00000621181 PPP1R9AQ9ULJ8 1098 aa9.4□□□□□ -0.91
CLK1-215ENST00000621181 ADAMTS5Q9UNA0 930 aa9.4□□□□□ -0.91
CLK1-215ENST00000621181 SMIM22K7EJ46 135 aa9.39□□□□□ -0.91
CLK1-215ENST00000621181 ZNF865P0CJ78 1059 aaPredicted RBP9.39□□□□□ -0.91
CLK1-215ENST00000621181 CD44P16070 742 aaKnown RBP9.39□□□□□ -0.91
CLK1-215ENST00000621181 ADD2P35612 726 aa9.39□□□□□ -0.91
CLK1-215ENST00000621181 ACLYP53396 1101 aa9.39□□□□□ -0.91
CLK1-215ENST00000621181 FAAP100Q0VG06 881 aa9.39□□□□□ -0.91
CLK1-215ENST00000621181 GRIN2CQ14957 1233 aa9.39□□□□□ -0.91
CLK1-215ENST00000621181 SLFNL1Q499Z3 407 aa9.39□□□□□ -0.91
CLK1-215ENST00000621181 FAM83BQ5T0W9 1011 aa9.39□□□□□ -0.91
CLK1-215ENST00000621181 C12orf60Q5U649 245 aa9.39□□□□□ -0.91
CLK1-215ENST00000621181 C16orf86Q6ZW13 317 aa9.39□□□□□ -0.91
CLK1-215ENST00000621181 ANKRD33Q7Z3H0 272 aa9.39□□□□□ -0.91
CLK1-215ENST00000621181 RASEFQ8IZ41 740 aa9.39□□□□□ -0.91
CLK1-215ENST00000621181 DDX11Q96FC9 970 aa9.39□□□□□ -0.91
CLK1-215ENST00000621181 TSEN34Q9BSV6 310 aaKnown RBP9.39□□□□□ -0.91
CLK1-215ENST00000621181 BOLA2Q9H3K6 86 aa9.39□□□□□ -0.91
CLK1-215ENST00000621181 ZNF576Q9H609 170 aa9.39□□□□□ -0.91
CLK1-215ENST00000621181 PAG1Q9NWQ8 432 aa9.39□□□□□ -0.91
CLK1-215ENST00000621181 ZHX1Q9UKY1 873 aaPredicted RBP9.39□□□□□ -0.91
CLK1-215ENST00000621181 SYNRGQ9UMZ2 1314 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 MOXD2PA6NHM9 499 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 C19orf67A6NJJ6 358 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 ADAMTS4O75173 837 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 SLC4A3P48751 1232 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 KCNA10Q16322 511 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 MSL3Q8N5Y2 521 aaKnown RBP9.38□□□□□ -0.91
CLK1-215ENST00000621181 VTI1AQ96AJ9 217 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 TIFAQ96CG3 184 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 GLT1D1Q96MS3 346 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 TEX13BQ9BXU2 312 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 FAM184BQ9ULE4 1060 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 MROH7Q68CQ1 1323 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 SYNGAP1Q96PV0 1343 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 HMMRO75330 724 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 TIMP1P01033 207 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 C6orf222P0C671 652 aaPredicted RBP9.38□□□□□ -0.91
CLK1-215ENST00000621181 TJAP1Q5JTD0 557 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 SNRNP48Q6IEG0 339 aaKnown RBP9.38□□□□□ -0.91
CLK1-215ENST00000621181 CCDC174Q6PII3 467 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 CCDC129Q6ZRS4 1044 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 PANK1Q8TE04 598 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 SLF1Q9BQI6 1058 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 TSPYL2Q9H2G4 693 aaPredicted RBP9.38□□□□□ -0.91
CLK1-215ENST00000621181 SPC25Q9HBM1 224 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 RCAN3Q9UKA8 241 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 CTDP1Q9Y5B0 961 aaPredicted RBP9.38□□□□□ -0.91
CLK1-215ENST00000621181 SLC4A4Q9Y6R1 1079 aa9.38□□□□□ -0.91
CLK1-215ENST00000621181 DUSP11O75319 330 aaKnown RBP9.37□□□□□ -0.91
CLK1-215ENST00000621181 NUBP1P53384 320 aa9.37□□□□□ -0.91
CLK1-215ENST00000621181 MFSD5Q6N075 450 aa9.37□□□□□ -0.91
CLK1-215ENST00000621181 CTR9Q6PD62 1173 aa9.37□□□□□ -0.91
CLK1-215ENST00000621181 CPXCR1Q8N123 301 aa9.37□□□□□ -0.91
CLK1-215ENST00000621181 USP38Q8NB14 1042 aa9.37□□□□□ -0.91
CLK1-215ENST00000621181 PCSK9Q8NBP7 692 aaKnown RBP9.37□□□□□ -0.91
CLK1-215ENST00000621181 REPS2Q8NFH8 660 aa9.37□□□□□ -0.91
CLK1-215ENST00000621181 PPM1EQ8WY54 764 aa9.37□□□□□ -0.91
CLK1-215ENST00000621181 GAS2L1Q99501 681 aaPredicted RBP9.37□□□□□ -0.91
CLK1-215ENST00000621181 NUP88Q99567 741 aaPredicted RBP9.37□□□□□ -0.91
CLK1-215ENST00000621181 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.37□□□□□ -0.918e-10■■□□□ 13.9
CLK1-215ENST00000621181 CHD7Q9P2D1 2997 aa9.37□□□□□ -0.91
CLK1-215ENST00000621181 ELP1O95163 1332 aa9.36□□□□□ -0.91
CLK1-215ENST00000621181 SNAI1O95863 264 aaPredicted RBP9.36□□□□□ -0.91
CLK1-215ENST00000621181 PPIGQ13427 754 aaKnown RBP eCLIP9.36□□□□□ -0.911e-9■□□□□ 9.8
CLK1-215ENST00000621181 MAMDC4Q6UXC1 1216 aa9.36□□□□□ -0.91
CLK1-215ENST00000621181 PRPF38AQ8NAV1 312 aaKnown RBP9.36□□□□□ -0.91
CLK1-215ENST00000621181 KLHDC9Q8NEP7 349 aa9.36□□□□□ -0.91
CLK1-215ENST00000621181 CCDC136Q96JN2 1154 aa9.36□□□□□ -0.91
CLK1-215ENST00000621181 ARPP21Q9UBL0 812 aaPredicted RBP9.36□□□□□ -0.91
CLK1-215ENST00000621181 TBX21Q9UL17 535 aa9.36□□□□□ -0.91
CLK1-215ENST00000621181 CHD9Q3L8U1 2897 aa9.36□□□□□ -0.91
CLK1-215ENST00000621181 MYADML2A6NDP7 307 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 TNFRSF10AO00220 468 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 RAB11FIP3O75154 756 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 CHGBP05060 677 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 ASGR1P07306 291 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 CSF2RAP15509 400 aa9.35□□□□□ -0.91
CLK1-215ENST00000621181 ATP5JP18859 108 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms