RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 IFIT1BQ5T764 474 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-212ENST00000596163 CREB3L3Q68CJ9 461 aa20.27■□□□□ 0.84
SHKBP1-212ENST00000596163 ENAHQ8N8S7 591 aaPredicted RBP20.27■□□□□ 0.84
SHKBP1-212ENST00000596163 PNMA1Q8ND90 353 aa20.27■□□□□ 0.84
SHKBP1-212ENST00000596163 NKX2-3Q8TAU0 364 aa20.27■□□□□ 0.84
SHKBP1-212ENST00000596163 ZNF333Q96JL9 665 aa20.27■□□□□ 0.84
SHKBP1-212ENST00000596163 SLC38A10Q9HBR0 1119 aa20.27■□□□□ 0.84
SHKBP1-212ENST00000596163 SLC5A4Q9NY91 659 aa20.27■□□□□ 0.84
SHKBP1-212ENST00000596163 IFIT3O14879 490 aaKnown RBP20.26■□□□□ 0.83
SHKBP1-212ENST00000596163 ATP2A1O14983 1001 aa20.26■□□□□ 0.83
SHKBP1-212ENST00000596163 REC8O95072 547 aa20.26■□□□□ 0.83
SHKBP1-212ENST00000596163 CYP2B6P20813 491 aa20.26■□□□□ 0.83
SHKBP1-212ENST00000596163 MAP2K5Q13163 448 aa20.26■□□□□ 0.83
SHKBP1-212ENST00000596163 GPATCH4Q5T3I0 446 aaKnown RBP20.26■□□□□ 0.83
SHKBP1-212ENST00000596163 ABRAQ8N0Z2 381 aa20.26■□□□□ 0.83
SHKBP1-212ENST00000596163 REPS2Q8NFH8 660 aa20.26■□□□□ 0.83
SHKBP1-212ENST00000596163 CHMP4CQ96CF2 233 aa20.26■□□□□ 0.83
SHKBP1-212ENST00000596163 ZNF214Q9UL59 606 aaPredicted RBP20.26■□□□□ 0.83
SHKBP1-212ENST00000596163 LAMA4Q16363 1823 aa20.25■□□□□ 0.83
SHKBP1-212ENST00000596163 PDHBP11177 359 aa20.25■□□□□ 0.83
SHKBP1-212ENST00000596163 FCER1AP12319 257 aa20.25■□□□□ 0.83
SHKBP1-212ENST00000596163 ZKSCAN1P17029 563 aaPredicted RBP20.25■□□□□ 0.83
SHKBP1-212ENST00000596163 BTNL9Q6UXG8 535 aa20.25■□□□□ 0.83
SHKBP1-212ENST00000596163 CYB5R4Q7L1T6 521 aa20.25■□□□□ 0.83
SHKBP1-212ENST00000596163 CPXCR1Q8N123 301 aa20.25■□□□□ 0.83
SHKBP1-212ENST00000596163 USP6NLQ92738 828 aa20.25■□□□□ 0.83
SHKBP1-212ENST00000596163 MTA3Q9BTC8 594 aa20.25■□□□□ 0.83
SHKBP1-212ENST00000596163 MYH4Q9Y623 1939 aa20.25■□□□□ 0.83
SHKBP1-212ENST00000596163 SNHG28P0DPA3 235 aa20.24■□□□□ 0.83
SHKBP1-212ENST00000596163 GRB14Q14449 540 aa20.24■□□□□ 0.83
SHKBP1-212ENST00000596163 SNRNP48Q6IEG0 339 aaKnown RBP20.24■□□□□ 0.83
SHKBP1-212ENST00000596163 DPP9Q86TI2 863 aa20.24■□□□□ 0.83
SHKBP1-212ENST00000596163 APBA2Q99767 749 aa20.24■□□□□ 0.83
SHKBP1-212ENST00000596163 GPCPD1Q9NPB8 672 aa20.24■□□□□ 0.83
SHKBP1-212ENST00000596163 PNMA2Q9UL42 364 aa20.24■□□□□ 0.83
SHKBP1-212ENST00000596163 PRR12Q9ULL5 1215 aa20.24■□□□□ 0.83
SHKBP1-212ENST00000596163 HMGCRP04035 888 aa20.23■□□□□ 0.83
SHKBP1-212ENST00000596163 ELNP15502 786 aa20.23■□□□□ 0.83
SHKBP1-212ENST00000596163 MCM5P33992 734 aa20.23■□□□□ 0.83
SHKBP1-212ENST00000596163 ZNF543Q08ER8 600 aa20.23■□□□□ 0.83
SHKBP1-212ENST00000596163 KRT32Q14532 448 aa20.23■□□□□ 0.83
SHKBP1-212ENST00000596163 KCTD2Q14681 263 aa20.23■□□□□ 0.83
SHKBP1-212ENST00000596163 WTAPQ15007 396 aa20.23■□□□□ 0.83
SHKBP1-212ENST00000596163 SEC23AQ15436 765 aa20.23■□□□□ 0.83
SHKBP1-212ENST00000596163 SYDE2Q5VT97 1194 aa20.23■□□□□ 0.83
SHKBP1-212ENST00000596163 STOX1Q6ZVD7 989 aa20.23■□□□□ 0.83
SHKBP1-212ENST00000596163 RAVER2Q9HCJ3 691 aaKnown RBP20.23■□□□□ 0.83
SHKBP1-212ENST00000596163 FBXO40Q9UH90 709 aa20.23■□□□□ 0.83
SHKBP1-212ENST00000596163 TAF6LQ9Y6J9 622 aa20.23■□□□□ 0.83
SHKBP1-212ENST00000596163 FRMPD2Q68DX3 1309 aaPredicted RBP20.23■□□□□ 0.83
SHKBP1-212ENST00000596163 ZSWIM8A7E2V4 1837 aa20.23■□□□□ 0.83
SHKBP1-212ENST00000596163 MGAMO43451 1857 aa20.22■□□□□ 0.83
SHKBP1-212ENST00000596163 EPB41L2O43491 1005 aaKnown RBP20.22■□□□□ 0.83
SHKBP1-212ENST00000596163 HOXC6P09630 235 aa20.22■□□□□ 0.83
SHKBP1-212ENST00000596163 SLC4A3P48751 1232 aa20.22■□□□□ 0.83
SHKBP1-212ENST00000596163 TKFCQ3LXA3 575 aa20.22■□□□□ 0.83
SHKBP1-212ENST00000596163 ASPRV1Q53RT3 343 aa20.22■□□□□ 0.83
SHKBP1-212ENST00000596163 TMEM67Q5HYA8 995 aa20.22■□□□□ 0.83
SHKBP1-212ENST00000596163 MB21D2Q8IYB1 491 aaPredicted RBP20.22■□□□□ 0.83
SHKBP1-212ENST00000596163 TMTC2Q8N394 836 aa20.22■□□□□ 0.83
SHKBP1-212ENST00000596163 CHST13Q8NET6 341 aa20.22■□□□□ 0.83
SHKBP1-212ENST00000596163 MMP19Q99542 508 aa20.22■□□□□ 0.83
SHKBP1-212ENST00000596163 EIF5BO60841 1220 aaKnown RBP20.21■□□□□ 0.83
SHKBP1-212ENST00000596163 INHAP05111 366 aa20.21■□□□□ 0.83
SHKBP1-212ENST00000596163 PARP1P09874 1014 aaKnown RBP20.21■□□□□ 0.83
SHKBP1-212ENST00000596163 ADORA2AP29274 412 aa20.21■□□□□ 0.83
SHKBP1-212ENST00000596163 SOX10P56693 466 aa20.21■□□□□ 0.83
SHKBP1-212ENST00000596163 TSGA10IPQ3SY00 556 aa20.21■□□□□ 0.83
SHKBP1-212ENST00000596163 TTBK2Q6IQ55 1244 aa20.21■□□□□ 0.83
SHKBP1-212ENST00000596163 TMEM87BQ96K49 555 aa20.21■□□□□ 0.83
SHKBP1-212ENST00000596163 RLFQ13129 1914 aa20.21■□□□□ 0.83
SHKBP1-212ENST00000596163 PRC1O43663 620 aa20.2■□□□□ 0.82
SHKBP1-212ENST00000596163 CAPN2P17655 700 aa20.2■□□□□ 0.82
SHKBP1-212ENST00000596163 SLC16A2P36021 539 aa20.2■□□□□ 0.82
SHKBP1-212ENST00000596163 MFSD14CQ5VZR4 134 aa20.2■□□□□ 0.82
SHKBP1-212ENST00000596163 A0A0G2JMZ2 1700 aa20.19■□□□□ 0.82
SHKBP1-212ENST00000596163 MYCP01106 439 aaPredicted RBP20.19■□□□□ 0.82
SHKBP1-212ENST00000596163 CCL5P13501 91 aa20.19■□□□□ 0.82
SHKBP1-212ENST00000596163 CCDC174Q6PII3 467 aa20.19■□□□□ 0.82
SHKBP1-212ENST00000596163 RASGRP2Q7LDG7 609 aa20.19■□□□□ 0.82
SHKBP1-212ENST00000596163 CHST3Q7LGC8 479 aa20.19■□□□□ 0.82
SHKBP1-212ENST00000596163 CATIPQ7Z7H3 387 aa20.19■□□□□ 0.82
SHKBP1-212ENST00000596163 IGDCC4Q8TDY8 1250 aa20.19■□□□□ 0.82
SHKBP1-212ENST00000596163 TRIB2Q92519 343 aa20.19■□□□□ 0.82
SHKBP1-212ENST00000596163 DDX11Q96FC9 970 aa20.19■□□□□ 0.82
SHKBP1-212ENST00000596163 NEK1Q96PY6 1258 aa20.19■□□□□ 0.82
SHKBP1-212ENST00000596163 RNF208Q9H0X6 261 aa20.19■□□□□ 0.82
SHKBP1-212ENST00000596163 RANBP17Q9H2T7 1088 aaKnown RBP20.19■□□□□ 0.82
SHKBP1-212ENST00000596163 HMGB1P09429 215 aaKnown RBP20.18■□□□□ 0.82
SHKBP1-212ENST00000596163 GOLGA8HP0CJ92 632 aa20.18■□□□□ 0.82
SHKBP1-212ENST00000596163 ANTXR2P58335 489 aa20.18■□□□□ 0.82
SHKBP1-212ENST00000596163 MTFR1Q15390 333 aa20.18■□□□□ 0.82
SHKBP1-212ENST00000596163 HMX1Q9NP08 348 aaPredicted RBP20.18■□□□□ 0.82
SHKBP1-212ENST00000596163 RIPK3Q9Y572 518 aa20.18■□□□□ 0.82
SHKBP1-212ENST00000596163 ICAM1P05362 532 aa20.17■□□□□ 0.82
SHKBP1-212ENST00000596163 GJB1P08034 283 aa20.17■□□□□ 0.82
SHKBP1-212ENST00000596163 RGS19P49795 217 aa20.17■□□□□ 0.82
SHKBP1-212ENST00000596163 OLFML2BQ68BL8 750 aa20.17■□□□□ 0.82
SHKBP1-212ENST00000596163 NFXL1Q6ZNB6 911 aa20.17■□□□□ 0.82
SHKBP1-212ENST00000596163 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms