RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 U2AF1L4Q8WU68 220 aaKnown RBP19.11■□□□□ 0.65
TRIM28-206ENST00000595974 KIFC2Q96AC6 838 aa19.11■□□□□ 0.65
TRIM28-206ENST00000595974 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.11■□□□□ 0.651e-5■■■□□ 18
TRIM28-206ENST00000595974 ISY1Q9ULR0 285 aaKnown RBP19.11■□□□□ 0.65
TRIM28-206ENST00000595974 PLA2G6O60733 806 aa19.1■□□□□ 0.65
TRIM28-206ENST00000595974 ZBED4O75132 1171 aa19.1■□□□□ 0.65
TRIM28-206ENST00000595974 PRKAR2AP13861 404 aaKnown RBP19.1■□□□□ 0.65
TRIM28-206ENST00000595974 MCCP23508 829 aa19.1■□□□□ 0.65
TRIM28-206ENST00000595974 TRIM32Q13049 653 aa19.1■□□□□ 0.65
TRIM28-206ENST00000595974 CCL14Q16627 93 aa19.1■□□□□ 0.65
TRIM28-206ENST00000595974 CHURC1Q8WUH1 139 aa19.1■□□□□ 0.65
TRIM28-206ENST00000595974 DCAF4Q8WV16 495 aa19.1■□□□□ 0.65
TRIM28-206ENST00000595974 CCDC136Q96JN2 1154 aa19.1■□□□□ 0.65
TRIM28-206ENST00000595974 TTC14Q96N46 770 aa19.1■□□□□ 0.65
TRIM28-206ENST00000595974 CNNM2Q9H8M5 875 aa19.1■□□□□ 0.65
TRIM28-206ENST00000595974 SLC38A10Q9HBR0 1119 aa19.1■□□□□ 0.65
TRIM28-206ENST00000595974 HMX1Q9NP08 348 aaPredicted RBP19.1■□□□□ 0.65
TRIM28-206ENST00000595974 CTDP1Q9Y5B0 961 aaPredicted RBP19.1■□□□□ 0.65
TRIM28-206ENST00000595974 TMEM232C9JQI7 657 aa19.09■□□□□ 0.65
TRIM28-206ENST00000595974 SGPL1O95470 568 aa19.09■□□□□ 0.65
TRIM28-206ENST00000595974 FCER1AP12319 257 aa19.09■□□□□ 0.65
TRIM28-206ENST00000595974 OAZ1P54368 228 aa19.09■□□□□ 0.65
TRIM28-206ENST00000595974 IKQ13123 557 aaPredicted RBP19.09■□□□□ 0.65
TRIM28-206ENST00000595974 CCDC178Q5BJE1 867 aa19.09■□□□□ 0.65
TRIM28-206ENST00000595974 BMP2KLQ5H9B9 411 aa19.09■□□□□ 0.65
TRIM28-206ENST00000595974 RCSD1Q6JBY9 416 aa19.09■□□□□ 0.65
TRIM28-206ENST00000595974 DPP9Q86TI2 863 aa19.09■□□□□ 0.65
TRIM28-206ENST00000595974 IQCA1Q86XH1 822 aa19.09■□□□□ 0.65
TRIM28-206ENST00000595974 TMEM47Q9BQJ4 181 aa19.09■□□□□ 0.65
TRIM28-206ENST00000595974 KRT23Q9C075 422 aa19.09■□□□□ 0.65
TRIM28-206ENST00000595974 SLC5A4Q9NY91 659 aa19.09■□□□□ 0.65
TRIM28-206ENST00000595974 KDM4AO75164 1064 aa19.08■□□□□ 0.64
TRIM28-206ENST00000595974 MFSD14CQ5VZR4 134 aa19.08■□□□□ 0.64
TRIM28-206ENST00000595974 SNRNP48Q6IEG0 339 aaKnown RBP19.08■□□□□ 0.64
TRIM28-206ENST00000595974 NPLOC4Q8TAT6 608 aa19.08■□□□□ 0.64
TRIM28-206ENST00000595974 DEFB118Q96PH6 123 aa19.08■□□□□ 0.64
TRIM28-206ENST00000595974 MMP19Q99542 508 aa19.08■□□□□ 0.64
TRIM28-206ENST00000595974 U3KPZ7 1027 aaPredicted RBP19.08■□□□□ 0.64
TRIM28-206ENST00000595974 B4E1Z4 1266 aa19.07■□□□□ 0.64
TRIM28-206ENST00000595974 PTH1RQ03431 593 aa19.07■□□□□ 0.64
TRIM28-206ENST00000595974 CACNB2Q08289 660 aaPredicted RBP19.07■□□□□ 0.64
TRIM28-206ENST00000595974 KCTD2Q14681 263 aa19.07■□□□□ 0.64
TRIM28-206ENST00000595974 CCDC96Q2M329 555 aa19.07■□□□□ 0.64
TRIM28-206ENST00000595974 OLFML2BQ68BL8 750 aa19.07■□□□□ 0.64
TRIM28-206ENST00000595974 KCTD1Q719H9 257 aa19.07■□□□□ 0.64
TRIM28-206ENST00000595974 DGKHQ86XP1 1220 aa19.07■□□□□ 0.64
TRIM28-206ENST00000595974 CRISPLD2Q9H0B8 497 aa19.07■□□□□ 0.64
TRIM28-206ENST00000595974 FLRT1Q9NZU1 646 aa19.07■□□□□ 0.64
TRIM28-206ENST00000595974 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.06■□□□□ 0.641e-7■■□□□ 12.1
TRIM28-206ENST00000595974 RASGRP2Q7LDG7 609 aa19.06■□□□□ 0.64
TRIM28-206ENST00000595974 CPXCR1Q8N123 301 aa19.06■□□□□ 0.64
TRIM28-206ENST00000595974 RAVER2Q9HCJ3 691 aaKnown RBP19.06■□□□□ 0.64
TRIM28-206ENST00000595974 MTMR7Q9Y216 660 aa19.06■□□□□ 0.64
TRIM28-206ENST00000595974 COBLO75128 1261 aa19.05■□□□□ 0.64
TRIM28-206ENST00000595974 IGHA2P01877 340 aa19.05■□□□□ 0.64
TRIM28-206ENST00000595974 PDHBP11177 359 aa19.05■□□□□ 0.64
TRIM28-206ENST00000595974 SKAP1Q86WV1 359 aa19.05■□□□□ 0.64
TRIM28-206ENST00000595974 ZKSCAN3Q9BRR0 538 aa19.05■□□□□ 0.64
TRIM28-206ENST00000595974 FBXO40Q9UH90 709 aa19.05■□□□□ 0.64
TRIM28-206ENST00000595974 SMCHD1A6NHR9 2005 aa19.05■□□□□ 0.64
TRIM28-206ENST00000595974 MYH6P13533 1939 aa19.04■□□□□ 0.64
TRIM28-206ENST00000595974 FARP2O94887 1054 aaPredicted RBP19.04■□□□□ 0.64
TRIM28-206ENST00000595974 TFRCP02786 760 aaKnown RBP19.04■□□□□ 0.64
TRIM28-206ENST00000595974 CYP21A2P08686 494 aa19.04■□□□□ 0.64
TRIM28-206ENST00000595974 SNHG28P0DPA3 235 aa19.04■□□□□ 0.64
TRIM28-206ENST00000595974 TRDNQ13061 729 aa19.04■□□□□ 0.64
TRIM28-206ENST00000595974 BTNL9Q6UXG8 535 aa19.04■□□□□ 0.64
TRIM28-206ENST00000595974 UBE2Q1Q7Z7E8 422 aa19.04■□□□□ 0.64
TRIM28-206ENST00000595974 CHST13Q8NET6 341 aa19.04■□□□□ 0.64
TRIM28-206ENST00000595974 ANKS1AQ92625 1134 aa19.04■□□□□ 0.64
TRIM28-206ENST00000595974 MAP4K1Q92918 833 aa19.04■□□□□ 0.64
TRIM28-206ENST00000595974 CHMP4CQ96CF2 233 aa19.04■□□□□ 0.64
TRIM28-206ENST00000595974 MAML3Q96JK9 1138 aa19.04■□□□□ 0.64
TRIM28-206ENST00000595974 ZSCAN10Q96SZ4 725 aaPredicted RBP19.04■□□□□ 0.64
TRIM28-206ENST00000595974 ZSWIM5Q9P217 1185 aa19.04■□□□□ 0.64
TRIM28-206ENST00000595974 PRR12Q9ULL5 1215 aa19.04■□□□□ 0.64
TRIM28-206ENST00000595974 RIPK3Q9Y572 518 aa19.04■□□□□ 0.64
TRIM28-206ENST00000595974 MCM3APO60318 1980 aa19.04■□□□□ 0.64
TRIM28-206ENST00000595974 TNKSO95271 1327 aa19.03■□□□□ 0.64
TRIM28-206ENST00000595974 CYP2C19P33261 490 aa19.03■□□□□ 0.64
TRIM28-206ENST00000595974 KIAA1211Q6ZU35 1233 aa19.03■□□□□ 0.64
TRIM28-206ENST00000595974 ENAHQ8N8S7 591 aaPredicted RBP19.03■□□□□ 0.64
TRIM28-206ENST00000595974 ANKLE1Q8NAG6 615 aa19.03■□□□□ 0.64
TRIM28-206ENST00000595974 ESYT1Q9BSJ8 1104 aa19.03■□□□□ 0.64
TRIM28-206ENST00000595974 UBAC1Q9BSL1 405 aa19.03■□□□□ 0.64
TRIM28-206ENST00000595974 DIS3Q9Y2L1 958 aaKnown RBP19.03■□□□□ 0.64
TRIM28-206ENST00000595974 CENPBP07199 599 aaPredicted RBP19.02■□□□□ 0.64
TRIM28-206ENST00000595974 PGK2P07205 417 aa19.02■□□□□ 0.64
TRIM28-206ENST00000595974 CYBAP13498 195 aa19.02■□□□□ 0.64
TRIM28-206ENST00000595974 CCND3P30281 292 aaPredicted RBP19.02■□□□□ 0.64
TRIM28-206ENST00000595974 ZNF543Q08ER8 600 aa19.02■□□□□ 0.64
TRIM28-206ENST00000595974 ZNF792Q3KQV3 632 aa19.02■□□□□ 0.64
TRIM28-206ENST00000595974 TKFCQ3LXA3 575 aa19.02■□□□□ 0.64
TRIM28-206ENST00000595974 GPATCH4Q5T3I0 446 aaKnown RBP19.02■□□□□ 0.64
TRIM28-206ENST00000595974 PNMA1Q8ND90 353 aa19.02■□□□□ 0.64
TRIM28-206ENST00000595974 KAT14Q9H8E8 782 aa19.02■□□□□ 0.64
TRIM28-206ENST00000595974 OGDHLQ9ULD0 1010 aa19.02■□□□□ 0.64
TRIM28-206ENST00000595974 RBM8AQ9Y5S9 174 aaKnown RBP19.02■□□□□ 0.64
TRIM28-206ENST00000595974 ZNF536O15090 1300 aa19.01■□□□□ 0.63
TRIM28-206ENST00000595974 FRMPD2Q68DX3 1309 aaPredicted RBP19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 109.9 ms