RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 RIOX2Q8IUF8 465 aa16.69■□□□□ 0.26
SHKBP1-208ENST00000595726 FAM126BQ8IXS8 530 aa16.69■□□□□ 0.26
SHKBP1-208ENST00000595726 ZNF512BQ96KM6 892 aaPredicted RBP16.69■□□□□ 0.26
SHKBP1-208ENST00000595726 CCDC8Q9H0W5 538 aaPredicted RBP16.69■□□□□ 0.26
SHKBP1-208ENST00000595726 DBNLQ9UJU6 430 aaKnown RBP16.69■□□□□ 0.26
SHKBP1-208ENST00000595726 ZHX1Q9UKY1 873 aaPredicted RBP16.69■□□□□ 0.26
SHKBP1-208ENST00000595726 TNNQ9UQP3 1299 aa16.69■□□□□ 0.26
SHKBP1-208ENST00000595726 TMX2Q9Y320 296 aa16.69■□□□□ 0.26
SHKBP1-208ENST00000595726 ZBED9Q6R2W3 1325 aa16.69■□□□□ 0.26
SHKBP1-208ENST00000595726 ROBO3Q96MS0 1386 aa16.68■□□□□ 0.26
SHKBP1-208ENST00000595726 ERC2O15083 957 aa16.68■□□□□ 0.26
SHKBP1-208ENST00000595726 GNAI2P04899 355 aa16.68■□□□□ 0.26
SHKBP1-208ENST00000595726 AAK1Q2M2I8 961 aa16.68■□□□□ 0.26
SHKBP1-208ENST00000595726 PPP2R2DQ66LE6 453 aa16.68■□□□□ 0.26
SHKBP1-208ENST00000595726 KRT40Q6A162 431 aa16.68■□□□□ 0.26
SHKBP1-208ENST00000595726 DYNLL2Q96FJ2 89 aa16.68■□□□□ 0.26
SHKBP1-208ENST00000595726 RIOK1Q9BRS2 568 aaKnown RBP16.68■□□□□ 0.26
SHKBP1-208ENST00000595726 VCPKMTQ9H867 229 aa16.68■□□□□ 0.26
SHKBP1-208ENST00000595726 CERS4Q9HA82 394 aa16.68■□□□□ 0.26
SHKBP1-208ENST00000595726 C11orf16Q9NQ32 467 aa16.68■□□□□ 0.26
SHKBP1-208ENST00000595726 MCM9Q9NXL9 1143 aa16.68■□□□□ 0.26
SHKBP1-208ENST00000595726 ADAMTS5Q9UNA0 930 aa16.68■□□□□ 0.26
SHKBP1-208ENST00000595726 MROH7Q68CQ1 1323 aa16.68■□□□□ 0.26
SHKBP1-208ENST00000595726 DUSP11O75319 330 aaKnown RBP16.67■□□□□ 0.26
SHKBP1-208ENST00000595726 AKR1B1P15121 316 aa16.67■□□□□ 0.26
SHKBP1-208ENST00000595726 CCL23P55773 120 aa16.67■□□□□ 0.26
SHKBP1-208ENST00000595726 OS9Q13438 667 aaPredicted RBP16.67■□□□□ 0.26
SHKBP1-208ENST00000595726 GNASQ5JWF2 1037 aa16.67■□□□□ 0.26
SHKBP1-208ENST00000595726 TMEM179Q6ZVK1 233 aa16.67■□□□□ 0.26
SHKBP1-208ENST00000595726 ZNF214Q9UL59 606 aaPredicted RBP16.67■□□□□ 0.26
SHKBP1-208ENST00000595726 PRRC2BQ5JSZ5 2229 aaKnown RBP16.67■□□□□ 0.26
SHKBP1-208ENST00000595726 A0A0U1RQG5 324 aaPredicted RBP16.66■□□□□ 0.26
SHKBP1-208ENST00000595726 SMIM22K7EJ46 135 aa16.66■□□□□ 0.26
SHKBP1-208ENST00000595726 VWA5AO00534 786 aa16.66■□□□□ 0.26
SHKBP1-208ENST00000595726 TLL1O43897 1013 aa16.66■□□□□ 0.26
SHKBP1-208ENST00000595726 CD4P01730 458 aa16.66■□□□□ 0.26
SHKBP1-208ENST00000595726 CERS3Q8IU89 383 aa16.66■□□□□ 0.26
SHKBP1-208ENST00000595726 GBF1Q92538 1859 aa16.66■□□□□ 0.26
SHKBP1-208ENST00000595726 ARHGEF10LQ9HCE6 1279 aa16.66■□□□□ 0.26
SHKBP1-208ENST00000595726 MTCH2Q9Y6C9 303 aa16.66■□□□□ 0.26
SHKBP1-208ENST00000595726 MAGEB6P1A0A0J9YX57 407 aa16.65■□□□□ 0.26
SHKBP1-208ENST00000595726 WDR46O15213 610 aaKnown RBP16.65■□□□□ 0.26
SHKBP1-208ENST00000595726 TLR3O15455 904 aaKnown RBP16.65■□□□□ 0.26
SHKBP1-208ENST00000595726 IGSF3O75054 1194 aa16.65■□□□□ 0.26
SHKBP1-208ENST00000595726 CST5P28325 142 aaPredicted RBP16.65■□□□□ 0.26
SHKBP1-208ENST00000595726 SLC4A3P48751 1232 aa16.65■□□□□ 0.26
SHKBP1-208ENST00000595726 BEX3Q00994 111 aa16.65■□□□□ 0.26
SHKBP1-208ENST00000595726 ICA1Q05084 483 aa16.65■□□□□ 0.26
SHKBP1-208ENST00000595726 ACVR2BQ13705 512 aa16.65■□□□□ 0.26
SHKBP1-208ENST00000595726 PCSK9Q8NBP7 692 aaKnown RBP16.65■□□□□ 0.26
SHKBP1-208ENST00000595726 REPS2Q8NFH8 660 aa16.65■□□□□ 0.26
SHKBP1-208ENST00000595726 SDR42E1Q8WUS8 393 aa16.65■□□□□ 0.26
SHKBP1-208ENST00000595726 DDX11Q96FC9 970 aa16.65■□□□□ 0.26
SHKBP1-208ENST00000595726 MTIF3Q9H2K0 278 aaKnown RBP16.65■□□□□ 0.26
SHKBP1-208ENST00000595726 HIPK3Q9H422 1215 aa16.65■□□□□ 0.26
SHKBP1-208ENST00000595726 RIPK3Q9Y572 518 aa16.65■□□□□ 0.26
SHKBP1-208ENST00000595726 SLC4A7Q9Y6M7 1214 aa16.65■□□□□ 0.26
SHKBP1-208ENST00000595726 CTAGE5O15320 804 aa16.64■□□□□ 0.25
SHKBP1-208ENST00000595726 RAD21O60216 631 aa16.64■□□□□ 0.25
SHKBP1-208ENST00000595726 SURF6O75683 361 aaKnown RBP16.64■□□□□ 0.25
SHKBP1-208ENST00000595726 BCAR3O75815 825 aa16.64■□□□□ 0.25
SHKBP1-208ENST00000595726 GJA9P57773 515 aa16.64■□□□□ 0.25
SHKBP1-208ENST00000595726 CCDC144BQ3MJ40 725 aa16.64■□□□□ 0.25
SHKBP1-208ENST00000595726 ARHGAP45Q92619 1136 aa16.64■□□□□ 0.25
SHKBP1-208ENST00000595726 EAF2Q96CJ1 260 aaPredicted RBP16.64■□□□□ 0.25
SHKBP1-208ENST00000595726 VWCEQ96DN2 955 aa16.64■□□□□ 0.25
SHKBP1-208ENST00000595726 COL11A1P12107 1806 aaPredicted RBP16.63■□□□□ 0.25
SHKBP1-208ENST00000595726 DNAJC25-GNG10A0A024R161 153 aa16.63■□□□□ 0.25
SHKBP1-208ENST00000595726 EPOPA6NHQ4 379 aa16.63■□□□□ 0.25
SHKBP1-208ENST00000595726 ZBBXA8MT70 800 aa16.63■□□□□ 0.25
SHKBP1-208ENST00000595726 GPR37L1O60883 481 aa16.63■□□□□ 0.25
SHKBP1-208ENST00000595726 EEF2P13639 858 aaKnown RBP16.63■□□□□ 0.25
SHKBP1-208ENST00000595726 POLA2Q14181 598 aa16.63■□□□□ 0.25
SHKBP1-208ENST00000595726 FAM83BQ5T0W9 1011 aa16.63■□□□□ 0.25
SHKBP1-208ENST00000595726 CXCL17Q6UXB2 119 aa16.63■□□□□ 0.25
SHKBP1-208ENST00000595726 MAMDC4Q6UXC1 1216 aa16.63■□□□□ 0.25
SHKBP1-208ENST00000595726 CRNKL1Q9BZJ0 848 aaKnown RBP16.63■□□□□ 0.25
SHKBP1-208ENST00000595726 TRPV6Q9H1D0 765 aa16.63■□□□□ 0.25
SHKBP1-208ENST00000595726 UPF3AQ9H1J1 476 aaKnown RBP16.63■□□□□ 0.25
SHKBP1-208ENST00000595726 WNT8AQ9H1J5 351 aa16.63■□□□□ 0.25
SHKBP1-208ENST00000595726 SPC25Q9HBM1 224 aa16.63■□□□□ 0.25
SHKBP1-208ENST00000595726 CD320Q9NPF0 282 aa16.63■□□□□ 0.25
SHKBP1-208ENST00000595726 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.63■□□□□ 0.25
SHKBP1-208ENST00000595726 PPP1R9AQ9ULJ8 1098 aa16.63■□□□□ 0.25
SHKBP1-208ENST00000595726 PCDHA11Q9Y5I1 949 aa16.63■□□□□ 0.25
SHKBP1-208ENST00000595726 PTGS1P23219 599 aa16.62■□□□□ 0.25
SHKBP1-208ENST00000595726 MSL3Q8N5Y2 521 aaKnown RBP16.62■□□□□ 0.25
SHKBP1-208ENST00000595726 SCLYQ96I15 445 aa16.62■□□□□ 0.25
SHKBP1-208ENST00000595726 NUP88Q99567 741 aaPredicted RBP16.62■□□□□ 0.25
SHKBP1-208ENST00000595726 SH2D4AQ9H788 454 aa16.62■□□□□ 0.25
SHKBP1-208ENST00000595726 DCP1AQ9NPI6 582 aaPredicted RBP16.62■□□□□ 0.25
SHKBP1-208ENST00000595726 CYP2D7A0A087X1C5 515 aa16.61■□□□□ 0.25
SHKBP1-208ENST00000595726 CA3P07451 260 aa16.61■□□□□ 0.25
SHKBP1-208ENST00000595726 TRIM27P14373 513 aa16.61■□□□□ 0.25
SHKBP1-208ENST00000595726 ATP2A2P16615 1042 aaKnown RBP16.61■□□□□ 0.25
SHKBP1-208ENST00000595726 SNRNP48Q6IEG0 339 aaKnown RBP16.61■□□□□ 0.25
SHKBP1-208ENST00000595726 CLUAP1Q96AJ1 413 aa16.61■□□□□ 0.25
SHKBP1-208ENST00000595726 FGD4Q96M96 766 aa16.61■□□□□ 0.25
SHKBP1-208ENST00000595726 NOC4LQ9BVI4 516 aaKnown RBP16.61■□□□□ 0.25
SHKBP1-208ENST00000595726 GRIN2DO15399 1336 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms