RNA–Protein interactions for RNA: ENST00000576613.5

CTDNEP1-212, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 3

Gene CTDNEP1, Length 606 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-212ENST00000576613 RPAP2Q8IXW5 612 aaPredicted RBP13.98□□□□□ -0.17
CTDNEP1-212ENST00000576613 PANK1Q8TE04 598 aa13.98□□□□□ -0.17
CTDNEP1-212ENST00000576613 LENG1Q96BZ8 264 aaPredicted RBP13.98□□□□□ -0.17
CTDNEP1-212ENST00000576613 DDX11Q96FC9 970 aa13.98□□□□□ -0.17
CTDNEP1-212ENST00000576613 GLT1D1Q96MS3 346 aa13.98□□□□□ -0.17
CTDNEP1-212ENST00000576613 SLF1Q9BQI6 1058 aa13.98□□□□□ -0.17
CTDNEP1-212ENST00000576613 BOLA2Q9H3K6 86 aa13.98□□□□□ -0.17
CTDNEP1-212ENST00000576613 PRDM6Q9NQX0 595 aa13.98□□□□□ -0.17
CTDNEP1-212ENST00000576613 ARPP21Q9UBL0 812 aaPredicted RBP13.98□□□□□ -0.17
CTDNEP1-212ENST00000576613 SLC4A4Q9Y6R1 1079 aa13.98□□□□□ -0.17
CTDNEP1-212ENST00000576613 ZBED9Q6R2W3 1325 aa13.97□□□□□ -0.17
CTDNEP1-212ENST00000576613 TIMP1P01033 207 aa13.97□□□□□ -0.17
CTDNEP1-212ENST00000576613 SLFNL1Q499Z3 407 aa13.97□□□□□ -0.17
CTDNEP1-212ENST00000576613 SNRNP48Q6IEG0 339 aaKnown RBP13.97□□□□□ -0.17
CTDNEP1-212ENST00000576613 REPS2Q8NFH8 660 aa13.97□□□□□ -0.17
CTDNEP1-212ENST00000576613 HAUS7Q99871 368 aa13.97□□□□□ -0.17
CTDNEP1-212ENST00000576613 SPC25Q9HBM1 224 aa13.97□□□□□ -0.17
CTDNEP1-212ENST00000576613 ZHX1Q9UKY1 873 aaPredicted RBP13.97□□□□□ -0.17
CTDNEP1-212ENST00000576613 CTDP1Q9Y5B0 961 aaPredicted RBP13.97□□□□□ -0.17
CTDNEP1-212ENST00000576613 GREB1LQ9C091 1923 aaPredicted RBP13.97□□□□□ -0.17
CTDNEP1-212ENST00000576613 ELP1O95163 1332 aa13.96□□□□□ -0.17
CTDNEP1-212ENST00000576613 SMIM22K7EJ46 135 aa13.96□□□□□ -0.17
CTDNEP1-212ENST00000576613 DUSP11O75319 330 aaKnown RBP13.96□□□□□ -0.17
CTDNEP1-212ENST00000576613 GRIN2CQ14957 1233 aa13.96□□□□□ -0.17
CTDNEP1-212ENST00000576613 KCNA10Q16322 511 aa13.96□□□□□ -0.17
CTDNEP1-212ENST00000576613 CTR9Q6PD62 1173 aa13.96□□□□□ -0.17
CTDNEP1-212ENST00000576613 MAMDC4Q6UXC1 1216 aa13.96□□□□□ -0.17
CTDNEP1-212ENST00000576613 ZNF467Q7Z7K2 595 aaPredicted RBP13.96□□□□□ -0.17
CTDNEP1-212ENST00000576613 PRPF38AQ8NAV1 312 aaKnown RBP13.96□□□□□ -0.17
CTDNEP1-212ENST00000576613 PCSK9Q8NBP7 692 aaKnown RBP13.96□□□□□ -0.17
CTDNEP1-212ENST00000576613 KLHDC9Q8NEP7 349 aa13.96□□□□□ -0.17
CTDNEP1-212ENST00000576613 TIFAQ96CG3 184 aa13.96□□□□□ -0.17
CTDNEP1-212ENST00000576613 ZNF576Q9H609 170 aa13.96□□□□□ -0.17
CTDNEP1-212ENST00000576613 DNAJC25-GNG10A0A024R161 153 aa13.95□□□□□ -0.18
CTDNEP1-212ENST00000576613 ZBED4O75132 1171 aa13.95□□□□□ -0.18
CTDNEP1-212ENST00000576613 SNAI1O95863 264 aaPredicted RBP13.95□□□□□ -0.18
CTDNEP1-212ENST00000576613 C6orf222P0C671 652 aaPredicted RBP13.95□□□□□ -0.18
CTDNEP1-212ENST00000576613 CST5P28325 142 aaPredicted RBP13.95□□□□□ -0.18
CTDNEP1-212ENST00000576613 PPIGQ13427 754 aaKnown RBP eCLIP13.95□□□□□ -0.182e-6■■■□□ 18
CTDNEP1-212ENST00000576613 TJAP1Q5JTD0 557 aa13.95□□□□□ -0.18
CTDNEP1-212ENST00000576613 MFSD5Q6N075 450 aa13.95□□□□□ -0.18
CTDNEP1-212ENST00000576613 NUP88Q99567 741 aaPredicted RBP13.95□□□□□ -0.18
CTDNEP1-212ENST00000576613 MKNK2Q9HBH9 465 aa13.95□□□□□ -0.18
CTDNEP1-212ENST00000576613 TBX21Q9UL17 535 aa13.95□□□□□ -0.18
CTDNEP1-212ENST00000576613 DDX19BQ9UMR2 479 aa13.95□□□□□ -0.18
CTDNEP1-212ENST00000576613 TTC28Q96AY4 2481 aa13.95□□□□□ -0.18
CTDNEP1-212ENST00000576613 F5H6K3 240 aa13.94□□□□□ -0.18
CTDNEP1-212ENST00000576613 ATP2A1O14983 1001 aa13.94□□□□□ -0.18
CTDNEP1-212ENST00000576613 SLC4A3P48751 1232 aa13.94□□□□□ -0.18
CTDNEP1-212ENST00000576613 KLRC3Q07444 240 aa13.94□□□□□ -0.18
CTDNEP1-212ENST00000576613 ACVR2BQ13705 512 aa13.94□□□□□ -0.18
CTDNEP1-212ENST00000576613 CCSAPQ6IQ19 270 aaPredicted RBP13.94□□□□□ -0.18
CTDNEP1-212ENST00000576613 CPXCR1Q8N123 301 aa13.94□□□□□ -0.18
CTDNEP1-212ENST00000576613 ANKRD35Q8N283 1001 aa13.94□□□□□ -0.18
CTDNEP1-212ENST00000576613 TMEM199Q8N511 208 aa13.94□□□□□ -0.18
CTDNEP1-212ENST00000576613 VTI1AQ96AJ9 217 aa13.94□□□□□ -0.18
CTDNEP1-212ENST00000576613 GAS2L1Q99501 681 aaPredicted RBP13.94□□□□□ -0.18
CTDNEP1-212ENST00000576613 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.94□□□□□ -0.182e-6■■■□□ 15.1
CTDNEP1-212ENST00000576613 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.94□□□□□ -0.18
CTDNEP1-212ENST00000576613 ABHD16BQ9H3Z7 469 aa13.94□□□□□ -0.18
CTDNEP1-212ENST00000576613 CHMP4BQ9H444 224 aaKnown RBP13.94□□□□□ -0.18
CTDNEP1-212ENST00000576613 NYAP2Q9P242 653 aa13.94□□□□□ -0.18
CTDNEP1-212ENST00000576613 FBXO40Q9UH90 709 aa13.94□□□□□ -0.18
CTDNEP1-212ENST00000576613 MYH4Q9Y623 1939 aa13.94□□□□□ -0.18
CTDNEP1-212ENST00000576613 MUC3AQ02505 3323 aa13.93□□□□□ -0.18
CTDNEP1-212ENST00000576613 A0A0U1RQG5 324 aaPredicted RBP13.93□□□□□ -0.18
CTDNEP1-212ENST00000576613 TLR3O15455 904 aaKnown RBP13.93□□□□□ -0.18
CTDNEP1-212ENST00000576613 NDUFB10O96000 172 aa13.93□□□□□ -0.18
CTDNEP1-212ENST00000576613 ASGR1P07306 291 aa13.93□□□□□ -0.18
CTDNEP1-212ENST00000576613 RASA1P20936 1047 aa13.93□□□□□ -0.18
CTDNEP1-212ENST00000576613 SBK1Q52WX2 424 aa13.93□□□□□ -0.18
CTDNEP1-212ENST00000576613 PSRC1Q6PGN9 363 aaPredicted RBP13.93□□□□□ -0.18
CTDNEP1-212ENST00000576613 CCDC129Q6ZRS4 1044 aa13.93□□□□□ -0.18
CTDNEP1-212ENST00000576613 SIRT2Q8IXJ6 389 aa13.93□□□□□ -0.18
CTDNEP1-212ENST00000576613 PUS7LQ9H0K6 701 aaKnown RBP13.93□□□□□ -0.18
CTDNEP1-212ENST00000576613 ZNF287Q9HBT7 754 aa13.93□□□□□ -0.18
CTDNEP1-212ENST00000576613 ZBTB40Q9NUA8 1239 aa13.93□□□□□ -0.18
CTDNEP1-212ENST00000576613 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.93□□□□□ -0.18
CTDNEP1-212ENST00000576613 RIPK3Q9Y572 518 aa13.93□□□□□ -0.18
CTDNEP1-212ENST00000576613 MYADML2A6NDP7 307 aa13.92□□□□□ -0.18
CTDNEP1-212ENST00000576613 CHGBP05060 677 aa13.92□□□□□ -0.18
CTDNEP1-212ENST00000576613 CDK7P50613 346 aa13.92□□□□□ -0.18
CTDNEP1-212ENST00000576613 GJA9P57773 515 aa13.92□□□□□ -0.18
CTDNEP1-212ENST00000576613 CCDC144BQ3MJ40 725 aa13.92□□□□□ -0.18
CTDNEP1-212ENST00000576613 GNASQ5JWF2 1037 aa13.92□□□□□ -0.18
CTDNEP1-212ENST00000576613 GIMAP6Q6P9H5 292 aa13.92□□□□□ -0.18
CTDNEP1-212ENST00000576613 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.92□□□□□ -0.18
CTDNEP1-212ENST00000576613 USP38Q8NB14 1042 aa13.92□□□□□ -0.18
CTDNEP1-212ENST00000576613 CHST13Q8NET6 341 aa13.92□□□□□ -0.18
CTDNEP1-212ENST00000576613 KIFC2Q96AC6 838 aa13.92□□□□□ -0.18
CTDNEP1-212ENST00000576613 UPF3AQ9H1J1 476 aaKnown RBP13.92□□□□□ -0.18
CTDNEP1-212ENST00000576613 CLIP2Q9UDT6 1046 aa13.92□□□□□ -0.18
CTDNEP1-212ENST00000576613 SYNPO2Q9UMS6 1093 aa13.92□□□□□ -0.18
CTDNEP1-212ENST00000576613 MCM3APO60318 1980 aa13.91□□□□□ -0.18
CTDNEP1-212ENST00000576613 MINDY4BA8MYZ0 360 aa13.91□□□□□ -0.18
CTDNEP1-212ENST00000576613 ARVCFO00192 962 aa13.91□□□□□ -0.18
CTDNEP1-212ENST00000576613 TNFRSF10AO00220 468 aa13.91□□□□□ -0.18
CTDNEP1-212ENST00000576613 CSF2RAP15509 400 aa13.91□□□□□ -0.18
CTDNEP1-212ENST00000576613 OAZ1P54368 228 aa13.91□□□□□ -0.18
CTDNEP1-212ENST00000576613 TMEM240Q5SV17 173 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms