RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 GABRQQ9UN88 632 aa15.24■□□□□ 0.03
CLK3-224ENST00000568605 SLC15A5A6NIM6 579 aa15.23■□□□□ 0.03
CLK3-224ENST00000568605 ADCY3O60266 1144 aa15.23■□□□□ 0.03
CLK3-224ENST00000568605 PEX10O60683 326 aa15.23■□□□□ 0.03
CLK3-224ENST00000568605 OAZ1P54368 228 aa15.23■□□□□ 0.03
CLK3-224ENST00000568605 TMEM132BQ14DG7 1078 aa15.23■□□□□ 0.03
CLK3-224ENST00000568605 GPATCH4Q5T3I0 446 aaKnown RBP15.23■□□□□ 0.03
CLK3-224ENST00000568605 KCTD1Q719H9 257 aa15.23■□□□□ 0.03
CLK3-224ENST00000568605 NCAPG2Q86XI2 1143 aa15.23■□□□□ 0.03
CLK3-224ENST00000568605 RIOX2Q8IUF8 465 aa15.23■□□□□ 0.03
CLK3-224ENST00000568605 TRMT44Q8IYL2 757 aaKnown RBP15.23■□□□□ 0.03
CLK3-224ENST00000568605 ENAHQ8N8S7 591 aaPredicted RBP15.23■□□□□ 0.03
CLK3-224ENST00000568605 APBA2Q99767 749 aa15.23■□□□□ 0.03
CLK3-224ENST00000568605 BIN2Q9UBW5 565 aaPredicted RBP15.23■□□□□ 0.03
CLK3-224ENST00000568605 SLC27A2O14975 620 aa15.22■□□□□ 0.03
CLK3-224ENST00000568605 ATP2A1O14983 1001 aa15.22■□□□□ 0.03
CLK3-224ENST00000568605 STRNO43815 780 aa15.22■□□□□ 0.03
CLK3-224ENST00000568605 PDHBP11177 359 aa15.22■□□□□ 0.03
CLK3-224ENST00000568605 ZKSCAN1P17029 563 aaPredicted RBP15.22■□□□□ 0.03
CLK3-224ENST00000568605 ERCC3P19447 782 aa15.22■□□□□ 0.03
CLK3-224ENST00000568605 PTPREP23469 700 aa15.22■□□□□ 0.03
CLK3-224ENST00000568605 STAT3P40763 770 aa15.22■□□□□ 0.03
CLK3-224ENST00000568605 GRB14Q14449 540 aa15.22■□□□□ 0.03
CLK3-224ENST00000568605 NECTIN1Q15223 517 aa15.22■□□□□ 0.03
CLK3-224ENST00000568605 CREB3L3Q68CJ9 461 aa15.22■□□□□ 0.03
CLK3-224ENST00000568605 SNRNP48Q6IEG0 339 aaKnown RBP15.22■□□□□ 0.03
CLK3-224ENST00000568605 POTEEQ6S8J3 1075 aa15.22■□□□□ 0.03
CLK3-224ENST00000568605 ANKS1AQ92625 1134 aa15.22■□□□□ 0.03
CLK3-224ENST00000568605 ZNF333Q96JL9 665 aa15.22■□□□□ 0.03
CLK3-224ENST00000568605 MTA3Q9BTC8 594 aa15.22■□□□□ 0.03
CLK3-224ENST00000568605 SLC38A10Q9HBR0 1119 aa15.22■□□□□ 0.03
CLK3-224ENST00000568605 SLC5A4Q9NY91 659 aa15.22■□□□□ 0.03
CLK3-224ENST00000568605 ZNF214Q9UL59 606 aaPredicted RBP15.22■□□□□ 0.03
CLK3-224ENST00000568605 LRRC37A2A6NM11 1700 aa15.22■□□□□ 0.03
CLK3-224ENST00000568605 BAZ2BQ9UIF8 2168 aaKnown RBP15.22■□□□□ 0.03
CLK3-224ENST00000568605 IFIT3O14879 490 aaKnown RBP15.21■□□□□ 0.03
CLK3-224ENST00000568605 EIF5BO60841 1220 aaKnown RBP15.21■□□□□ 0.03
CLK3-224ENST00000568605 HMGCRP04035 888 aa15.21■□□□□ 0.03
CLK3-224ENST00000568605 XRCC5P13010 732 aaKnown RBP15.21■□□□□ 0.03
CLK3-224ENST00000568605 MCM5P33992 734 aa15.21■□□□□ 0.03
CLK3-224ENST00000568605 MAP2K5Q13163 448 aa15.21■□□□□ 0.03
CLK3-224ENST00000568605 KRT32Q14532 448 aa15.21■□□□□ 0.03
CLK3-224ENST00000568605 WTAPQ15007 396 aa15.21■□□□□ 0.03
CLK3-224ENST00000568605 ASPRV1Q53RT3 343 aa15.21■□□□□ 0.03
CLK3-224ENST00000568605 ABRAQ8N0Z2 381 aa15.21■□□□□ 0.03
CLK3-224ENST00000568605 REPS2Q8NFH8 660 aa15.21■□□□□ 0.03
CLK3-224ENST00000568605 SH3TC2Q8TF17 1288 aa15.21■□□□□ 0.03
CLK3-224ENST00000568605 TMEM106CQ9BVX2 250 aa15.21■□□□□ 0.03
CLK3-224ENST00000568605 PNMA2Q9UL42 364 aa15.21■□□□□ 0.03
CLK3-224ENST00000568605 FRMPD2Q68DX3 1309 aaPredicted RBP15.2■□□□□ 0.02
CLK3-224ENST00000568605 EPB41L2O43491 1005 aaKnown RBP15.2■□□□□ 0.02
CLK3-224ENST00000568605 SNHG28P0DPA3 235 aa15.2■□□□□ 0.02
CLK3-224ENST00000568605 FCER1AP12319 257 aa15.2■□□□□ 0.02
CLK3-224ENST00000568605 CYP2B6P20813 491 aa15.2■□□□□ 0.02
CLK3-224ENST00000568605 ZNF543Q08ER8 600 aa15.2■□□□□ 0.02
CLK3-224ENST00000568605 KCTD2Q14681 263 aa15.2■□□□□ 0.02
CLK3-224ENST00000568605 MORN1Q5T089 497 aa15.2■□□□□ 0.02
CLK3-224ENST00000568605 SYDE2Q5VT97 1194 aa15.2■□□□□ 0.02
CLK3-224ENST00000568605 STOX1Q6ZVD7 989 aa15.2■□□□□ 0.02
CLK3-224ENST00000568605 CYB5R4Q7L1T6 521 aa15.2■□□□□ 0.02
CLK3-224ENST00000568605 RASGRP2Q7LDG7 609 aa15.2■□□□□ 0.02
CLK3-224ENST00000568605 MB21D2Q8IYB1 491 aaPredicted RBP15.2■□□□□ 0.02
CLK3-224ENST00000568605 CPXCR1Q8N123 301 aa15.2■□□□□ 0.02
CLK3-224ENST00000568605 CHMP4CQ96CF2 233 aa15.2■□□□□ 0.02
CLK3-224ENST00000568605 FBXO40Q9UH90 709 aa15.2■□□□□ 0.02
CLK3-224ENST00000568605 GJD2Q9UKL4 321 aa15.2■□□□□ 0.02
CLK3-224ENST00000568605 PRR12Q9ULL5 1215 aa15.2■□□□□ 0.02
CLK3-224ENST00000568605 CENPFP49454 3210 aa15.19■□□□□ 0.02
CLK3-224ENST00000568605 INHAP05111 366 aa15.19■□□□□ 0.02
CLK3-224ENST00000568605 PARP1P09874 1014 aaKnown RBP15.19■□□□□ 0.02
CLK3-224ENST00000568605 ELNP15502 786 aa15.19■□□□□ 0.02
CLK3-224ENST00000568605 SEC23AQ15436 765 aa15.19■□□□□ 0.02
CLK3-224ENST00000568605 TMEM67Q5HYA8 995 aa15.19■□□□□ 0.02
CLK3-224ENST00000568605 BTNL9Q6UXG8 535 aa15.19■□□□□ 0.02
CLK3-224ENST00000568605 DPP9Q86TI2 863 aa15.19■□□□□ 0.02
CLK3-224ENST00000568605 NKX2-3Q8TAU0 364 aa15.19■□□□□ 0.02
CLK3-224ENST00000568605 TMEM87BQ96K49 555 aa15.19■□□□□ 0.02
CLK3-224ENST00000568605 MMP19Q99542 508 aa15.19■□□□□ 0.02
CLK3-224ENST00000568605 GPCPD1Q9NPB8 672 aa15.19■□□□□ 0.02
CLK3-224ENST00000568605 PRC1O43663 620 aa15.18■□□□□ 0.02
CLK3-224ENST00000568605 HOXC6P09630 235 aa15.18■□□□□ 0.02
CLK3-224ENST00000568605 ADORA2AP29274 412 aa15.18■□□□□ 0.02
CLK3-224ENST00000568605 SOX10P56693 466 aa15.18■□□□□ 0.02
CLK3-224ENST00000568605 TKFCQ3LXA3 575 aa15.18■□□□□ 0.02
CLK3-224ENST00000568605 CHST13Q8NET6 341 aa15.18■□□□□ 0.02
CLK3-224ENST00000568605 USP6NLQ92738 828 aa15.18■□□□□ 0.02
CLK3-224ENST00000568605 RAVER2Q9HCJ3 691 aaKnown RBP15.18■□□□□ 0.02
CLK3-224ENST00000568605 TAF6LQ9Y6J9 622 aa15.18■□□□□ 0.02
CLK3-224ENST00000568605 WDR19Q8NEZ3 1342 aa15.17■□□□□ 0.02
CLK3-224ENST00000568605 KIAA1217Q5T5P2 1943 aa15.17■□□□□ 0.02
CLK3-224ENST00000568605 DHX16O60231 1041 aaKnown RBP15.17■□□□□ 0.02
CLK3-224ENST00000568605 HMGB1P09429 215 aaKnown RBP15.17■□□□□ 0.02
CLK3-224ENST00000568605 SLC4A3P48751 1232 aa15.17■□□□□ 0.02
CLK3-224ENST00000568605 CATIPQ7Z7H3 387 aa15.17■□□□□ 0.02
CLK3-224ENST00000568605 TRIB2Q92519 343 aa15.17■□□□□ 0.02
CLK3-224ENST00000568605 RANBP17Q9H2T7 1088 aaKnown RBP15.17■□□□□ 0.02
CLK3-224ENST00000568605 ACAD9Q9H845 621 aa15.17■□□□□ 0.02
CLK3-224ENST00000568605 CCPG1Q9ULG6 757 aa15.17■□□□□ 0.02
CLK3-224ENST00000568605 ICAM1P05362 532 aa15.16■□□□□ 0.02
CLK3-224ENST00000568605 SLC16A2P36021 539 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms