RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 RACK1P63244 317 aaKnown RBP6.26□□□□□ -1.41
LIMA1-203ENST00000547825 IRX3P78415 501 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-203ENST00000547825 FILIP1LQ4L180 1135 aa6.26□□□□□ -1.41
LIMA1-203ENST00000547825 NUP133Q8WUM0 1156 aa6.26□□□□□ -1.41
LIMA1-203ENST00000547825 CRACR2AQ9BSW2 395 aa6.26□□□□□ -1.41
LIMA1-203ENST00000547825 CARD6Q9BX69 1037 aa6.26□□□□□ -1.41
LIMA1-203ENST00000547825 THSD7BQ9C0I4 1608 aa6.26□□□□□ -1.41
LIMA1-203ENST00000547825 HIP1O00291 1037 aa6.26□□□□□ -1.41
LIMA1-203ENST00000547825 KIAA0754O94854 1291 aa6.26□□□□□ -1.41
LIMA1-203ENST00000547825 CHGBP05060 677 aa6.26□□□□□ -1.41
LIMA1-203ENST00000547825 RHOXF2BP0C7M4 288 aa6.26□□□□□ -1.41
LIMA1-203ENST00000547825 VARSP26640 1264 aaKnown RBP6.26□□□□□ -1.41
LIMA1-203ENST00000547825 EDEM1Q92611 657 aa6.26□□□□□ -1.41
LIMA1-203ENST00000547825 CNKSR1Q969H4 720 aa6.26□□□□□ -1.41
LIMA1-203ENST00000547825 C8orf76Q96K31 380 aa6.26□□□□□ -1.41
LIMA1-203ENST00000547825 RHOXF2Q9BQY4 288 aa6.26□□□□□ -1.41
LIMA1-203ENST00000547825 LZTFL1Q9NQ48 299 aa6.26□□□□□ -1.41
LIMA1-203ENST00000547825 ECHDC1Q9NTX5 307 aa6.26□□□□□ -1.41
LIMA1-203ENST00000547825 MAP4K5Q9Y4K4 846 aa6.26□□□□□ -1.41
LIMA1-203ENST00000547825 ZSCAN12O43309 604 aa6.26□□□□□ -1.41
LIMA1-203ENST00000547825 CYP19A1P11511 503 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-203ENST00000547825 ZSCAN20P17040 1043 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-203ENST00000547825 INTS4Q96HW7 963 aaKnown RBP6.26□□□□□ -1.41
LIMA1-203ENST00000547825 USP20Q9Y2K6 914 aa6.26□□□□□ -1.41
LIMA1-203ENST00000547825 CCDC171Q6TFL3 1326 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 ATP2C2O75185 946 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 GSDMDP57764 484 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 MTFR1Q15390 333 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 ENOX2Q16206 610 aaKnown RBP6.25□□□□□ -1.41
LIMA1-203ENST00000547825 PLEKHO1Q53GL0 409 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-203ENST00000547825 OTUD7BQ6GQQ9 843 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 DDX46Q7L014 1031 aaKnown RBP6.25□□□□□ -1.41
LIMA1-203ENST00000547825 ANKRD65E5RJM6 399 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 EML1O00423 815 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 ZBTB24O43167 697 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-203ENST00000547825 CBFA2T2O43439 604 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 KIF5CO60282 957 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 NEMFO60524 1076 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 ZNF75DP51815 510 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 EVCP57679 992 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 VPS53Q5VIR6 699 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 ZSCAN25Q6NSZ9 544 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 CDC37L1Q7L3B6 337 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 ALDH16A1Q8IZ83 802 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 GJD3Q8N144 294 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 RAPGEF4Q8WZA2 1011 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 RNF34Q969K3 372 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 IL17RAQ96F46 866 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 DMRTB1Q96MA1 342 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 TTC14Q96N46 770 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 DHX16O60231 1041 aaKnown RBP6.25□□□□□ -1.41
LIMA1-203ENST00000547825 ZNF76P36508 570 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 ANAPC15P60006 121 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 PSMA6P60900 246 aaKnown RBP6.25□□□□□ -1.41
LIMA1-203ENST00000547825 CBLBQ13191 982 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 RNF187Q5TA31 235 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-203ENST00000547825 ZNF530Q6P9A1 599 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-203ENST00000547825 RUFY3Q7L099 469 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 COL23A1Q86Y22 540 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-203ENST00000547825 ERC1Q8IUD2 1116 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 ZNF295-AS1Q8N0V1 137 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 MICALL1Q8N3F8 863 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 JMYQ8N9B5 988 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 GPR152Q8TDT2 470 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 SMARCC1Q92922 1105 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-203ENST00000547825 SMARCE1Q969G3 411 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 ACSBG1Q96GR2 724 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 GDAP1L1Q96MZ0 367 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 NEK1Q96PY6 1258 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 RASSF4Q9H2L5 321 aa6.25□□□□□ -1.41
LIMA1-203ENST00000547825 OPLAHO14841 1288 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 JAK2O60674 1132 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 TM4SF1P30408 202 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 IRS1P35568 1242 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 ZAP70P43403 619 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 TLR1Q15399 786 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 ADCK5Q3MIX3 580 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 CNNM3Q8NE01 707 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 KIAA1524Q8TCG1 905 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 PI4K2BQ8TCG2 481 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 ZNF232Q9UNY5 417 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 SNX14Q9Y5W7 946 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 LOC102724428A0A0B4J2F2 783 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 CDR1P51861 262 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 SIK1P57059 783 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 DHX8Q14562 1220 aaKnown RBP6.24□□□□□ -1.41
LIMA1-203ENST00000547825 ODF2Q5BJF6 829 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 USPL1Q5W0Q7 1092 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 MPRIPQ6WCQ1 1025 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 SLC16A10Q8TF71 515 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 COL15A1P39059 1388 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 ERICH2A1L162 156 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 PDGFAP04085 211 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 PIP4K2AP48426 406 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-203ENST00000547825 Q6ZUG5 572 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 CCDC116Q8IYX3 515 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 TXLNBQ8N3L3 684 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 CACTINQ8WUQ7 758 aaKnown RBP6.24□□□□□ -1.41
LIMA1-203ENST00000547825 DNAAF4Q8WXU2 420 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 ERO1AQ96HE7 468 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms